Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04490 and RR42_RS04495 are separated by 32 nucleotides RR42_RS04495 and RR42_RS04500 are separated by 206 nucleotides RR42_RS04500 and RR42_RS04505 are separated by 3 nucleotides
RR42_RS04490: RR42_RS04490 - 30S ribosomal protein S1, at 1,002,995 to 1,004,689
_RS04490
RR42_RS04495: RR42_RS04495 - integration host factor subunit beta, at 1,004,722 to 1,005,219
_RS04495
RR42_RS04500: RR42_RS04500 - membrane protein, at 1,005,426 to 1,005,755
_RS04500
RR42_RS04505: RR42_RS04505 - N-acetylglucosaminyl transferase, at 1,005,759 to 1,006,997
_RS04505
Position (kb)
1004
1005
1006 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1005.021 kb on + strand, within RR42_RS04495 at 1005.022 kb on - strand, within RR42_RS04495 at 1005.085 kb on - strand, within RR42_RS04495 at 1005.097 kb on - strand, within RR42_RS04495 at 1005.114 kb on + strand, within RR42_RS04495 at 1005.301 kb on + strand at 1005.301 kb on + strand at 1005.302 kb on - strand at 1005.302 kb on - strand at 1005.320 kb on + strand at 1005.729 kb on + strand at 1005.729 kb on + strand at 1005.736 kb on + strand at 1005.736 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 1,005,021 + RR42_RS04495 0.60 -0.0 1,005,022 - RR42_RS04495 0.60 -0.5 1,005,085 - RR42_RS04495 0.73 -1.4 1,005,097 - RR42_RS04495 0.75 -2.0 1,005,114 + RR42_RS04495 0.79 -1.8 1,005,301 + -0.3 1,005,301 + -0.4 1,005,302 - +0.7 1,005,302 - -0.9 1,005,320 + -0.0 1,005,729 + +0.6 1,005,729 + -0.5 1,005,736 + +2.3 1,005,736 + -0.3
Or see this region's nucleotide sequence