Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01885 and RR42_RS01890 are separated by 34 nucleotides RR42_RS01890 and RR42_RS01895 are separated by 135 nucleotides RR42_RS01895 and RR42_RS01900 are separated by 175 nucleotides RR42_RS01900 and RR42_RS01905 are separated by 78 nucleotides
RR42_RS01885: RR42_RS01885 - cytochrome C oxidase assembly protein, at 425,766 to 426,380
_RS01885
RR42_RS01890: RR42_RS01890 - membrane protein, at 426,415 to 426,627
_RS01890
RR42_RS01895: RR42_RS01895 - MFS transporter, at 426,763 to 427,623
_RS01895
RR42_RS01900: RR42_RS01900 - membrane protein, at 427,799 to 428,008
_RS01900
RR42_RS01905: RR42_RS01905 - cytochrome C oxidase subunit II, at 428,087 to 428,848
_RS01905
Position (kb) 426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 425.886 kb on + strand, within RR42_RS01885 at 425.941 kb on - strand, within RR42_RS01885 at 426.139 kb on - strand, within RR42_RS01885 at 426.282 kb on - strand, within RR42_RS01885 at 426.282 kb on - strand, within RR42_RS01885 at 426.291 kb on + strand, within RR42_RS01885 at 426.292 kb on - strand, within RR42_RS01885 at 426.294 kb on - strand, within RR42_RS01885 at 426.662 kb on + strand at 426.663 kb on - strand at 426.666 kb on + strand at 426.666 kb on + strand at 426.791 kb on - strand at 426.791 kb on - strand at 426.793 kb on + strand at 426.794 kb on - strand at 426.831 kb on + strand at 426.898 kb on + strand, within RR42_RS01895 at 426.898 kb on + strand, within RR42_RS01895 at 426.898 kb on + strand, within RR42_RS01895 at 426.986 kb on - strand, within RR42_RS01895 at 427.081 kb on + strand, within RR42_RS01895 at 427.082 kb on - strand, within RR42_RS01895 at 427.154 kb on + strand, within RR42_RS01895 at 427.299 kb on + strand, within RR42_RS01895 at 427.366 kb on + strand, within RR42_RS01895 at 427.366 kb on + strand, within RR42_RS01895 at 427.420 kb on + strand, within RR42_RS01895 at 427.421 kb on - strand, within RR42_RS01895 at 427.423 kb on - strand, within RR42_RS01895 at 427.564 kb on + strand at 427.601 kb on - strand at 427.621 kb on + strand at 427.622 kb on - strand at 427.622 kb on - strand at 427.723 kb on + strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.830 kb on - strand, within RR42_RS01900 at 427.830 kb on - strand, within RR42_RS01900 at 427.830 kb on - strand, within RR42_RS01900 at 427.966 kb on + strand, within RR42_RS01900 at 427.966 kb on + strand, within RR42_RS01900 at 428.036 kb on - strand at 428.041 kb on + strand at 428.041 kb on + strand at 428.042 kb on - strand at 428.042 kb on - strand at 428.338 kb on + strand, within RR42_RS01905 at 428.339 kb on - strand, within RR42_RS01905 at 428.498 kb on - strand, within RR42_RS01905
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 425,886 + RR42_RS01885 0.20 -2.2 425,941 - RR42_RS01885 0.28 -2.1 426,139 - RR42_RS01885 0.61 -1.5 426,282 - RR42_RS01885 0.84 -3.6 426,282 - RR42_RS01885 0.84 -0.5 426,291 + RR42_RS01885 0.85 -0.9 426,292 - RR42_RS01885 0.86 -1.1 426,294 - RR42_RS01885 0.86 -0.4 426,662 + -1.0 426,663 - -1.3 426,666 + +0.2 426,666 + +0.3 426,791 - -0.8 426,791 - -0.7 426,793 + -0.4 426,794 - -1.5 426,831 + -2.6 426,898 + RR42_RS01895 0.16 -2.0 426,898 + RR42_RS01895 0.16 -0.6 426,898 + RR42_RS01895 0.16 +0.7 426,986 - RR42_RS01895 0.26 -0.2 427,081 + RR42_RS01895 0.37 -1.7 427,082 - RR42_RS01895 0.37 -1.3 427,154 + RR42_RS01895 0.45 +3.1 427,299 + RR42_RS01895 0.62 -1.4 427,366 + RR42_RS01895 0.70 -1.4 427,366 + RR42_RS01895 0.70 -0.0 427,420 + RR42_RS01895 0.76 -0.3 427,421 - RR42_RS01895 0.76 +0.7 427,423 - RR42_RS01895 0.77 -2.2 427,564 + -1.2 427,601 - -2.5 427,621 + +0.1 427,622 - +1.1 427,622 - +0.1 427,723 + +0.8 427,724 - -0.2 427,724 - +0.3 427,724 - -0.4 427,724 - +0.1 427,724 - -0.3 427,830 - RR42_RS01900 0.15 +0.6 427,830 - RR42_RS01900 0.15 -2.6 427,830 - RR42_RS01900 0.15 +0.1 427,966 + RR42_RS01900 0.80 +0.5 427,966 + RR42_RS01900 0.80 -0.3 428,036 - +0.3 428,041 + +0.1 428,041 + +0.9 428,042 - -1.3 428,042 - +1.0 428,338 + RR42_RS01905 0.33 -0.7 428,339 - RR42_RS01905 0.33 -2.5 428,498 - RR42_RS01905 0.54 +0.7
Or see this region's nucleotide sequence