Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00365 and RR42_RS00370 are separated by 13 nucleotides RR42_RS00370 and RR42_RS00375 are separated by 95 nucleotides
RR42_RS00365: RR42_RS00365 - dihydropyrimidinase, at 98,817 to 100,232
_RS00365
RR42_RS00370: RR42_RS00370 - Asp/Glu/hydantoin racemase, at 100,246 to 100,974
_RS00370
RR42_RS00375: RR42_RS00375 - MFS transporter, at 101,070 to 102,368
_RS00375
Position (kb) 100
101 Strain fitness (log2 ratio) -1
0
1 at 99.253 kb on + strand, within RR42_RS00365 at 99.377 kb on - strand, within RR42_RS00365 at 99.377 kb on - strand, within RR42_RS00365 at 99.402 kb on - strand, within RR42_RS00365 at 99.418 kb on + strand, within RR42_RS00365 at 99.425 kb on - strand, within RR42_RS00365 at 99.741 kb on + strand, within RR42_RS00365 at 99.758 kb on - strand, within RR42_RS00365 at 99.766 kb on + strand, within RR42_RS00365 at 99.767 kb on - strand, within RR42_RS00365 at 99.767 kb on - strand, within RR42_RS00365 at 99.784 kb on + strand, within RR42_RS00365 at 99.784 kb on + strand, within RR42_RS00365 at 99.785 kb on - strand, within RR42_RS00365 at 99.862 kb on + strand, within RR42_RS00365 at 100.347 kb on - strand, within RR42_RS00370 at 100.496 kb on + strand, within RR42_RS00370 at 100.497 kb on - strand, within RR42_RS00370 at 100.497 kb on - strand, within RR42_RS00370 at 100.497 kb on - strand, within RR42_RS00370 at 100.554 kb on - strand, within RR42_RS00370 at 100.979 kb on + strand at 100.990 kb on - strand at 100.990 kb on - strand at 100.990 kb on - strand at 101.040 kb on + strand at 101.040 kb on + strand at 101.040 kb on + strand at 101.041 kb on - strand at 101.041 kb on - strand at 101.046 kb on + strand at 101.046 kb on + strand at 101.047 kb on - strand at 101.047 kb on - strand at 101.047 kb on - strand at 101.296 kb on + strand, within RR42_RS00375 at 101.297 kb on - strand, within RR42_RS00375 at 101.368 kb on + strand, within RR42_RS00375 at 101.573 kb on - strand, within RR42_RS00375 at 101.599 kb on + strand, within RR42_RS00375 at 101.653 kb on + strand, within RR42_RS00375 at 101.653 kb on + strand, within RR42_RS00375 at 101.654 kb on - strand, within RR42_RS00375 at 101.729 kb on + strand, within RR42_RS00375 at 101.731 kb on + strand, within RR42_RS00375 at 101.731 kb on + strand, within RR42_RS00375 at 101.732 kb on - strand, within RR42_RS00375 at 101.785 kb on + strand, within RR42_RS00375 at 101.786 kb on - strand, within RR42_RS00375 at 101.786 kb on - strand, within RR42_RS00375 at 101.788 kb on + strand, within RR42_RS00375 at 101.788 kb on + strand, within RR42_RS00375 at 101.788 kb on + strand, within RR42_RS00375
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 99,253 + RR42_RS00365 0.31 +0.1 99,377 - RR42_RS00365 0.40 +1.0 99,377 - RR42_RS00365 0.40 +0.2 99,402 - RR42_RS00365 0.41 +0.1 99,418 + RR42_RS00365 0.42 +0.6 99,425 - RR42_RS00365 0.43 -0.1 99,741 + RR42_RS00365 0.65 -0.2 99,758 - RR42_RS00365 0.66 -0.1 99,766 + RR42_RS00365 0.67 -1.2 99,767 - RR42_RS00365 0.67 -0.5 99,767 - RR42_RS00365 0.67 +0.1 99,784 + RR42_RS00365 0.68 +1.1 99,784 + RR42_RS00365 0.68 -0.7 99,785 - RR42_RS00365 0.68 +0.4 99,862 + RR42_RS00365 0.74 -0.3 100,347 - RR42_RS00370 0.14 +0.6 100,496 + RR42_RS00370 0.34 +0.3 100,497 - RR42_RS00370 0.34 +0.0 100,497 - RR42_RS00370 0.34 -0.1 100,497 - RR42_RS00370 0.34 -0.1 100,554 - RR42_RS00370 0.42 -0.3 100,979 + -0.2 100,990 - -0.9 100,990 - +1.1 100,990 - +0.8 101,040 + +0.4 101,040 + -0.5 101,040 + -0.5 101,041 - +1.1 101,041 - +0.6 101,046 + +0.2 101,046 + -0.1 101,047 - +0.3 101,047 - +0.4 101,047 - +1.0 101,296 + RR42_RS00375 0.17 +0.3 101,297 - RR42_RS00375 0.17 +0.0 101,368 + RR42_RS00375 0.23 -0.2 101,573 - RR42_RS00375 0.39 -0.2 101,599 + RR42_RS00375 0.41 +1.1 101,653 + RR42_RS00375 0.45 +0.5 101,653 + RR42_RS00375 0.45 +0.6 101,654 - RR42_RS00375 0.45 +0.5 101,729 + RR42_RS00375 0.51 +0.5 101,731 + RR42_RS00375 0.51 -0.2 101,731 + RR42_RS00375 0.51 -1.3 101,732 - RR42_RS00375 0.51 -0.7 101,785 + RR42_RS00375 0.55 +1.1 101,786 - RR42_RS00375 0.55 -0.9 101,786 - RR42_RS00375 0.55 +0.4 101,788 + RR42_RS00375 0.55 +0.4 101,788 + RR42_RS00375 0.55 -0.1 101,788 + RR42_RS00375 0.55 +0.1
Or see this region's nucleotide sequence