Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_RNA8

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_RNA7 and Psyr_RNA8 are separated by 144 nucleotidesPsyr_RNA8 and Psyr_0680 are separated by 195 nucleotides Psyr_RNA7: Psyr_RNA7 - 23S ribosomal RNA, at 774,183 to 777,085 _RNA7 Psyr_RNA8: Psyr_RNA8 - 5S ribosomal RNA, at 777,230 to 777,344 _RNA8 Psyr_0680: Psyr_0680 - DNA helicase/exodeoxyribonuclease V, gamma subunit, at 777,540 to 781,013 _0680 Position (kb) 777 778Strain fitness (log2 ratio) -1 0 1at 777.432 kb on + strandat 778.070 kb on - strand, within Psyr_0680

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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777,432 + +0.0
778,070 - Psyr_0680 0.15 +0.5

Or see this region's nucleotide sequence