Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4980

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,904,587	+		Psyr_4978	0.58	+0.5
5,904,587	+		Psyr_4978	0.58	+1.3
5,904,587	+		Psyr_4978	0.58	-0.1
5,904,587	+		Psyr_4978	0.58	+0.7
5,904,587	+		Psyr_4978	0.58	+0.9
5,904,588	-		Psyr_4978	0.59	-0.6
5,904,590	+		Psyr_4978	0.59	+0.2
5,904,591	-		Psyr_4978	0.60	-0.9
5,904,723	-				-0.5
5,904,813	-				-0.1
5,904,828	+				+0.6
5,904,875	-				-0.9
5,904,892	+				+0.5
5,904,900	+				-1.1
5,904,900	+				-2.5
5,904,906	-				-1.5
5,904,945	+		Psyr_4979	0.12	+0.9
5,904,995	-		Psyr_4979	0.21	-1.5
5,905,017	+		Psyr_4979	0.25	+0.5
5,905,017	+		Psyr_4979	0.25	+0.2
5,905,017	+		Psyr_4979	0.25	+1.6
5,905,038	+		Psyr_4979	0.28	+0.9
5,905,103	-		Psyr_4979	0.40	-3.0
5,905,207	+		Psyr_4979	0.59	+0.5
5,905,208	-		Psyr_4979	0.59	-0.3
5,905,208	-		Psyr_4979	0.59	-0.5
5,905,208	-		Psyr_4979	0.59	+0.7
5,905,239	+		Psyr_4979	0.64	-0.6
5,905,240	-		Psyr_4979	0.65	+1.8
5,905,267	+		Psyr_4979	0.69	-1.6
5,905,290	+		Psyr_4979	0.73	+3.5
5,905,291	-		Psyr_4979	0.74	-0.1
5,905,299	-		Psyr_4979	0.75	+0.7
5,905,306	+		Psyr_4979	0.76	-1.1
5,905,307	-		Psyr_4979	0.77	-0.9
5,905,309	+		Psyr_4979	0.77	+0.3
5,905,413	+				+2.3
5,905,437	+				+2.5
5,905,442	-				+0.9
5,905,473	-				-2.2
5,905,550	+				-2.4
5,905,624	+		Psyr_4980	0.17	-1.4
5,905,648	-		Psyr_4980	0.25	+1.1
5,905,648	-		Psyr_4980	0.25	+0.3
5,905,659	-		Psyr_4980	0.28	-1.3
5,905,668	+		Psyr_4980	0.31	+1.2
5,905,669	-		Psyr_4980	0.31	-0.2
5,905,669	-		Psyr_4980	0.31	+3.5
5,905,724	+		Psyr_4980	0.49	+1.7
5,905,725	-		Psyr_4980	0.49	+0.1
5,905,726	+		Psyr_4980	0.49	+0.2
5,905,790	+		Psyr_4980	0.69	+1.3
5,905,790	+		Psyr_4980	0.69	-0.8
5,905,790	+		Psyr_4980	0.69	+0.7
5,905,790	+		Psyr_4980	0.69	-0.1
5,905,790	+		Psyr_4980	0.69	+0.9
5,905,791	-		Psyr_4980	0.69	-0.3
5,905,791	-		Psyr_4980	0.69	+0.2
5,905,791	-		Psyr_4980	0.69	-0.1
5,905,791	-		Psyr_4980	0.69	-0.6
5,905,815	+		Psyr_4980	0.77	+1.1
5,905,816	-		Psyr_4980	0.77	-2.5
5,905,876	+				+1.3
5,905,877	-				+0.0
5,905,921	-				-2.1
5,905,930	+				-0.5
5,906,001	-				-0.0
5,906,031	+				+0.2
5,906,032	-				+0.1
5,906,057	+				-1.3
5,906,058	-				-2.0
5,906,153	-				-0.4
5,906,153	-				+0.7
5,906,181	+				+0.6
5,906,182	-				+0.2
5,906,182	-				+0.1
5,906,198	-				+1.6
5,906,211	-				-0.5
5,906,225	+				+0.6
5,906,233	+				-0.5
5,906,242	-				-0.5
5,906,297	+				+3.2
5,906,297	+				+0.3
5,906,297	+				-0.9
5,906,297	+				+0.1
5,906,297	+				+1.5
5,906,297	+				-0.6
5,906,297	+				-0.2
5,906,297	+				-0.0
5,906,297	+				-0.3
5,906,297	+				-0.1
5,906,297	+				-1.1
5,906,297	+				-0.6
5,906,297	+				+1.1
5,906,297	+				+0.4
5,906,297	+				+0.5
5,906,297	+				-0.3
5,906,297	+				-1.2
5,906,297	+				+0.6
5,906,298	-				-1.6
5,906,298	-				-0.9
5,906,298	-				+0.9
5,906,298	-				+1.8
5,906,298	-				-0.3
5,906,298	-				+0.2
5,906,298	-				+1.2
5,906,298	-				-1.1
5,906,298	-				-0.0
5,906,298	-				+2.6
5,906,298	-				-0.1
5,906,298	-				-1.0
5,906,301	+				-0.6
5,906,301	+				+0.1
5,906,301	+				-0.8
5,906,301	+				+1.7
5,906,301	+				+1.0
5,906,301	+				-0.3
5,906,301	+				-1.6
5,906,301	+				-0.0
5,906,301	+				-0.2
5,906,301	+				-0.2
5,906,301	+				+1.0
5,906,301	+				+0.6
5,906,301	+				+0.5
5,906,301	+				-0.7
5,906,301	+				-0.2
5,906,302	-				-0.9
5,906,302	-				-1.0
5,906,302	-				+0.9
5,906,302	-				+1.7
5,906,302	-				-1.1
5,906,302	-				+2.0
5,906,302	-				+0.1
5,906,302	-				+0.5
5,906,302	-				-0.1
5,906,302	-				-2.6
5,906,302	-				+0.2
5,906,302	-				+0.3
5,906,313	+				+2.7
5,906,313	+				-2.8
5,906,313	+				-0.8
5,906,313	+				+1.3
5,906,313	+				+0.9
5,906,314	-				-1.4
5,906,314	-				+1.7
5,906,314	-				-0.9
5,906,314	-				+0.9
5,906,314	-				-0.2
5,906,314	-				-1.3
5,906,317	+				+1.0
5,906,317	+				+1.5
5,906,317	+				+0.5
5,906,317	+				-1.1
5,906,317	+				-2.5
5,906,317	+				-0.1
5,906,317	+				-0.4
5,906,317	+				+1.6
5,906,317	+				+0.8
5,906,317	+				+0.5
5,906,317	+				+0.6
5,906,317	+				+2.3
5,906,317	+				+0.1
5,906,317	+				+0.5
5,906,317	+				-0.1
5,906,317	+				-0.0
5,906,318	-				+1.1
5,906,318	-				+0.9
5,906,318	-				+0.3
5,906,318	-				-0.1
5,906,318	-				+1.4
5,906,318	-				+0.4
5,906,318	-				-0.5
5,906,318	-				-0.9
5,906,318	-				+0.7
5,906,318	-				-0.0
5,906,318	-				+0.3
5,906,318	-				+0.3
5,906,318	-				+1.1
5,906,318	-				+1.5
5,906,318	-				+1.9
5,906,318	-				-0.1
5,906,318	-				-2.9
5,906,318	-				-0.4
5,906,318	-				-1.3
5,906,318	-				+0.2
5,906,318	-				-1.1
5,906,318	-				-1.9
5,906,318	-				-0.6
5,906,318	-				-1.5
5,906,318	-				-0.1
5,906,368	+				+0.5
5,906,368	+				-0.3
5,906,368	+				-0.3
5,906,368	+				+0.8
5,906,368	+				-0.4
5,906,368	+				-0.4
5,906,368	+				-1.8
5,906,368	+				-0.2
5,906,369	-				-0.1
5,906,369	-				+0.4
5,906,369	-				-1.3
5,906,369	-				-0.5
5,906,369	-				+0.2
5,906,369	-				+1.0
5,906,369	-				-1.1
5,906,369	-				-1.5
5,906,369	-				+1.1
5,906,374	+				+0.0
5,906,374	+				+0.5
5,906,374	+				-0.2
5,906,375	-				+0.4
5,906,375	-				-1.0
5,906,375	-				-0.8
5,906,421	+				-0.0
5,906,421	+				-1.1
5,906,421	+				-0.6
5,906,422	-				+0.8
5,906,422	-				+0.0
5,906,422	-				-3.5
5,906,422	-				+0.6
5,906,422	-				-0.4
5,906,483	+				+0.2
5,906,483	+				-0.5
5,906,484	-				+0.8
5,906,484	-				+0.8
5,906,484	-				-1.9
5,906,574	+		Psyr_4981	0.14	+1.3
5,906,574	+		Psyr_4981	0.14	+0.2
5,906,574	+		Psyr_4981	0.14	-0.3
5,906,574	+		Psyr_4981	0.14	+1.0
5,906,574	+		Psyr_4981	0.14	-0.2
5,906,574	+		Psyr_4981	0.14	-0.7
5,906,574	+		Psyr_4981	0.14	+0.6
5,906,574	+		Psyr_4981	0.14	+1.7
5,906,574	+		Psyr_4981	0.14	-1.3
5,906,574	+		Psyr_4981	0.14	+0.9
5,906,574	+		Psyr_4981	0.14	+0.4
5,906,574	+		Psyr_4981	0.14	+0.9
5,906,574	+		Psyr_4981	0.14	-1.2
5,906,574	+		Psyr_4981	0.14	+0.1
5,906,574	+		Psyr_4981	0.14	-0.6
5,906,574	+		Psyr_4981	0.14	+1.4
5,906,574	+		Psyr_4981	0.14	+0.3
5,906,575	-		Psyr_4981	0.14	-0.6
5,906,575	-		Psyr_4981	0.14	-0.7
5,906,575	-		Psyr_4981	0.14	-0.1
5,906,575	-		Psyr_4981	0.14	+1.7
5,906,575	-		Psyr_4981	0.14	+0.1
5,906,575	-		Psyr_4981	0.14	+0.4
5,906,575	-		Psyr_4981	0.14	+0.9
5,906,575	-		Psyr_4981	0.14	+0.1
5,906,575	-		Psyr_4981	0.14	+1.0
5,906,605	-		Psyr_4981	0.17	+0.7
5,906,605	-		Psyr_4981	0.17	-0.8
5,906,605	-		Psyr_4981	0.17	+0.5
5,906,605	-		Psyr_4981	0.17	-0.5
5,906,605	-		Psyr_4981	0.17	+0.7
5,906,605	-		Psyr_4981	0.17	+0.4
5,906,619	+		Psyr_4981	0.18	+1.0
5,906,620	-		Psyr_4981	0.18	+0.8
5,906,634	+		Psyr_4981	0.19	-0.3
5,906,634	+		Psyr_4981	0.19	+0.0
5,906,634	+		Psyr_4981	0.19	+1.4
5,906,635	-		Psyr_4981	0.20	-3.8
5,906,635	-		Psyr_4981	0.20	+0.6
5,906,704	+		Psyr_4981	0.26	+1.7
5,906,704	+		Psyr_4981	0.26	-0.3
5,906,733	+		Psyr_4981	0.29	+0.3
5,906,733	+		Psyr_4981	0.29	-0.8
5,906,734	-		Psyr_4981	0.29	-1.5
5,906,761	+		Psyr_4981	0.31	+0.7
5,906,761	+		Psyr_4981	0.31	+2.3
5,906,798	-		Psyr_4981	0.35	+1.0
5,906,840	+		Psyr_4981	0.39	-0.3
5,906,841	-		Psyr_4981	0.39	-1.0
5,906,841	-		Psyr_4981	0.39	+1.3