Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4977

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,902,353	+		Psyr_4976	0.42	-0.1
5,902,354	-		Psyr_4976	0.43	+1.7
5,902,354	-		Psyr_4976	0.43	-0.3
5,902,354	-		Psyr_4976	0.43	+0.5
5,902,562	+		Psyr_4976	0.80	-2.9
5,902,563	-		Psyr_4976	0.80	+0.4
5,902,575	+		Psyr_4976	0.82	+0.8
5,902,576	-		Psyr_4976	0.83	+1.2
5,902,576	-		Psyr_4976	0.83	-0.1
5,902,576	-		Psyr_4976	0.83	+0.5
5,902,576	-		Psyr_4976	0.83	-2.0
5,902,576	-		Psyr_4976	0.83	-0.2
5,902,576	-		Psyr_4976	0.83	+0.5
5,902,576	-		Psyr_4976	0.83	-1.3
5,902,644	+				+0.5
5,902,644	+				+0.5
5,902,644	+				-1.2
5,902,645	-				+0.8
5,902,645	-				-3.5
5,902,645	-				-0.3
5,902,645	-				+0.1
5,902,698	-				+1.0
5,902,699	+				-0.1
5,902,699	+				-1.0
5,902,699	+				+0.7
5,902,699	+				+0.9
5,902,699	+				+0.6
5,902,699	+				+0.7
5,902,699	+				-0.4
5,902,699	+				+2.1
5,902,699	+				-1.3
5,902,700	-				-2.5
5,902,700	-				-0.3
5,902,700	-				+0.2
5,902,700	-				+0.6
5,902,700	-				+0.0
5,902,700	-				-2.3
5,902,700	-				+0.1
5,902,750	+				-0.6
5,902,751	-				-0.0
5,902,752	+				-1.3
5,902,752	+				+4.0
5,902,752	+				+0.3
5,902,753	-				+1.0
5,902,753	-				-0.3
5,902,753	-				+0.1
5,902,753	-				+0.7
5,902,763	+				+0.1
5,902,763	+				+0.4
5,902,764	-				-1.3
5,902,764	-				-0.4
5,902,775	+				-0.1
5,902,775	+				-0.3
5,902,775	+				+0.1
5,902,775	+				-1.5
5,902,775	+				-0.5
5,902,776	-				-1.2
5,902,776	-				-0.4
5,902,776	-				-0.6
5,902,776	-				+1.8
5,902,776	-				+0.2
5,902,776	-				+0.2
5,902,776	-				+0.3
5,902,776	-				+0.7
5,902,777	+				-1.5
5,902,777	+				+0.4
5,902,777	+				+0.6
5,902,777	+				-2.0
5,902,777	+				-0.9
5,902,777	+				-0.0
5,902,777	+				+1.7
5,902,777	+				-0.4
5,902,777	+				-0.3
5,902,777	+				-1.0
5,902,778	-				+0.4
5,902,778	-				+0.0
5,902,778	-				-0.6
5,902,778	-				+0.6
5,902,778	-				-0.1
5,902,778	-				+0.7
5,902,778	-				+1.2
5,902,778	-				-0.6
5,902,778	-				+0.1
5,902,778	-				-0.6
5,902,778	-				-0.2
5,902,778	-				-0.0
5,902,826	+				-0.1
5,902,826	+				+1.7
5,902,868	+				+0.4
5,902,868	+				+0.6
5,902,868	+				-1.4
5,902,882	+				+0.4
5,902,882	+				+0.3
5,902,986	+				-0.0
5,903,023	+				-0.1
5,903,024	-				+6.8
5,903,062	+				+0.8
5,903,063	-				-0.9
5,903,063	-				+0.5
5,903,063	-				-0.5
5,903,103	+				+1.9
5,903,104	-				-0.4
5,903,104	-				-0.7
5,903,107	+				+1.9
5,903,107	+				-0.4
5,903,108	-				+1.0
5,903,142	-				-0.5
5,903,183	+				-0.5
5,903,261	+				+0.9
5,903,262	-				-0.5
5,903,266	-				-0.5
5,903,456	-		Psyr_4977	0.21	-0.3
5,903,460	+		Psyr_4977	0.21	-2.3
5,903,460	+		Psyr_4977	0.21	-1.1
5,903,460	+		Psyr_4977	0.21	+1.5
5,903,460	+		Psyr_4977	0.21	-2.0
5,903,460	+		Psyr_4977	0.21	+1.0
5,903,461	-		Psyr_4977	0.21	+0.7
5,903,525	+		Psyr_4977	0.27	-0.0
5,903,525	+		Psyr_4977	0.27	+1.7
5,903,525	+		Psyr_4977	0.27	+1.4
5,903,526	-		Psyr_4977	0.27	+1.5
5,903,654	-		Psyr_4977	0.40	+0.7
5,903,654	-		Psyr_4977	0.40	+0.6
5,903,654	-		Psyr_4977	0.40	+0.5
5,903,654	-		Psyr_4977	0.40	-0.4
5,903,674	+		Psyr_4977	0.42	+0.4
5,903,675	-		Psyr_4977	0.42	+0.3
5,903,689	+		Psyr_4977	0.44	+0.1
5,903,689	+		Psyr_4977	0.44	-0.2
5,903,690	-		Psyr_4977	0.44	+0.3
5,903,690	-		Psyr_4977	0.44	+0.4
5,903,706	+		Psyr_4977	0.45	+1.5
5,903,706	+		Psyr_4977	0.45	+0.4
5,903,707	-		Psyr_4977	0.45	-0.4
5,903,770	+		Psyr_4977	0.52	-0.7
5,903,770	+		Psyr_4977	0.52	-1.0
5,903,792	-		Psyr_4977	0.54	-2.5
5,903,792	-		Psyr_4977	0.54	+0.4
5,903,792	-		Psyr_4977	0.54	+0.4
5,903,792	-		Psyr_4977	0.54	-0.4
5,903,792	-		Psyr_4977	0.54	+0.8
5,903,814	+		Psyr_4977	0.56	-1.1
5,903,814	+		Psyr_4977	0.56	+0.4
5,903,931	+		Psyr_4977	0.68	+0.6
5,903,931	+		Psyr_4977	0.68	-0.8
5,903,945	-		Psyr_4977	0.69	-0.6
5,903,945	-		Psyr_4977	0.69	+1.4
5,903,990	+		Psyr_4977	0.73	-1.3
5,903,990	+		Psyr_4977	0.73	+0.1
5,903,990	+		Psyr_4977	0.73	-0.3
5,903,990	+		Psyr_4977	0.73	+0.3
5,903,990	+		Psyr_4977	0.73	+2.2
5,903,990	+		Psyr_4977	0.73	+3.5
5,903,990	+		Psyr_4977	0.73	-1.3
5,903,991	-		Psyr_4977	0.73	+1.1
5,903,991	-		Psyr_4977	0.73	-1.0
5,903,991	-		Psyr_4977	0.73	+1.2
5,903,991	-		Psyr_4977	0.73	-1.0
5,903,991	-		Psyr_4977	0.73	-0.0
5,903,991	-		Psyr_4977	0.73	-0.5
5,903,991	-		Psyr_4977	0.73	+0.7
5,903,991	-		Psyr_4977	0.73	-2.8
5,904,051	+		Psyr_4977	0.79	+0.1
5,904,051	+		Psyr_4977	0.79	-0.9
5,904,051	+		Psyr_4977	0.79	+2.0
5,904,052	-		Psyr_4977	0.80	+0.2
5,904,052	-		Psyr_4977	0.80	-0.1
5,904,118	-		Psyr_4977	0.86	+0.6
5,904,133	+		Psyr_4977	0.88	-0.6
5,904,133	+		Psyr_4977	0.88	+0.0
5,904,133	+		Psyr_4977	0.88	+4.2
5,904,133	+		Psyr_4977	0.88	+0.4
5,904,133	+		Psyr_4977	0.88	-0.5
5,904,133	+		Psyr_4977	0.88	-1.0
5,904,133	+		Psyr_4977	0.88	+0.5
5,904,134	-		Psyr_4977	0.88	-0.5
5,904,134	-		Psyr_4977	0.88	-0.9
5,904,134	-		Psyr_4977	0.88	+1.2
5,904,134	-		Psyr_4977	0.88	+1.3
5,904,134	-		Psyr_4977	0.88	+0.7
5,904,192	+				-1.5
5,904,226	+				+0.5
5,904,258	+				+0.5
5,904,258	+				-0.9
5,904,258	+				+0.1
5,904,258	+				+0.5
5,904,258	+				-1.5
5,904,258	+				+0.9
5,904,258	+				-1.2
5,904,258	+				+0.4
5,904,258	+				-0.2
5,904,258	+				+1.1
5,904,258	+				-0.4
5,904,258	+				-1.3
5,904,258	+				-2.1
5,904,258	+				+0.7
5,904,258	+				+1.5
5,904,258	+				+3.1
5,904,258	+				+0.7
5,904,258	+				-0.3
5,904,258	+				-0.5
5,904,259	-				-0.2
5,904,259	-				-0.5
5,904,259	-				-1.4
5,904,259	-				+0.3
5,904,259	-				-0.5
5,904,259	-				-0.2
5,904,259	-				-0.9
5,904,259	-				+1.4
5,904,259	-				+0.4
5,904,259	-				+0.1
5,904,259	-				+0.1
5,904,259	-				+0.2
5,904,259	-				-0.7
5,904,260	+				-1.5
5,904,260	+				+0.1
5,904,260	+				+0.7
5,904,260	+				-1.3
5,904,260	+				+0.2
5,904,260	+				-1.2
5,904,260	+				+0.4
5,904,261	-				+0.6
5,904,261	-				-0.8
5,904,261	-				-0.7
5,904,261	-				-0.7
5,904,261	-				+3.7
5,904,261	-				+0.0
5,904,261	-				+0.2
5,904,261	-				+0.2
5,904,261	-				+0.5
5,904,261	-				-0.3
5,904,267	+				-0.9
5,904,267	+				-0.5
5,904,268	-				-0.1
5,904,268	-				+0.8
5,904,268	-				-0.2
5,904,311	+				-0.2
5,904,378	+				-1.6
5,904,393	+				-0.2
5,904,393	+				-0.6
5,904,393	+				-0.2
5,904,393	+				+0.5
5,904,393	+				+0.1
5,904,394	-				+0.5
5,904,394	-				-0.6
5,904,430	+				-0.4
5,904,430	+				-0.1
5,904,430	+				-0.7
5,904,430	+				-0.2
5,904,430	+				-0.2
5,904,430	+				-0.1
5,904,430	+				+0.6
5,904,431	-				-0.1
5,904,453	+		Psyr_4978	0.14	-0.5
5,904,587	+		Psyr_4978	0.58	+0.5
5,904,587	+		Psyr_4978	0.58	+1.3
5,904,587	+		Psyr_4978	0.58	-0.1
5,904,587	+		Psyr_4978	0.58	+0.7
5,904,587	+		Psyr_4978	0.58	+0.9
5,904,588	-		Psyr_4978	0.59	-0.6
5,904,590	+		Psyr_4978	0.59	+0.2
5,904,591	-		Psyr_4978	0.60	-0.9
5,904,723	-				-0.5
5,904,813	-				-0.1
5,904,828	+				+0.6
5,904,875	-				-0.9
5,904,892	+				+0.5
5,904,900	+				-1.1
5,904,900	+				-2.5
5,904,906	-				-1.5
5,904,945	+		Psyr_4979	0.12	+0.9
5,904,995	-		Psyr_4979	0.21	-1.5
5,905,017	+		Psyr_4979	0.25	+0.5
5,905,017	+		Psyr_4979	0.25	+0.2
5,905,017	+		Psyr_4979	0.25	+1.6
5,905,038	+		Psyr_4979	0.28	+0.9
5,905,103	-		Psyr_4979	0.40	-3.0
5,905,207	+		Psyr_4979	0.59	+0.5
5,905,208	-		Psyr_4979	0.59	-0.3
5,905,208	-		Psyr_4979	0.59	-0.5
5,905,208	-		Psyr_4979	0.59	+0.7
5,905,239	+		Psyr_4979	0.64	-0.6
5,905,240	-		Psyr_4979	0.65	+1.8