Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4951

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,868,830	+		Psyr_4950	0.55	-1.3
5,868,831	-		Psyr_4950	0.55	-0.3
5,868,831	-		Psyr_4950	0.55	+0.5
5,868,854	+		Psyr_4950	0.57	+1.0
5,868,854	+		Psyr_4950	0.57	+0.2
5,868,855	-		Psyr_4950	0.57	-1.3
5,868,936	-		Psyr_4950	0.60	-1.1
5,868,936	-		Psyr_4950	0.60	-1.9
5,869,013	+		Psyr_4950	0.64	-0.1
5,869,013	+		Psyr_4950	0.64	+1.2
5,869,013	+		Psyr_4950	0.64	+0.9
5,869,013	+		Psyr_4950	0.64	+1.1
5,869,013	+		Psyr_4950	0.64	-0.9
5,869,013	+		Psyr_4950	0.64	-0.2
5,869,013	+		Psyr_4950	0.64	+1.9
5,869,013	+		Psyr_4950	0.64	-0.1
5,869,013	+		Psyr_4950	0.64	-1.1
5,869,013	+		Psyr_4950	0.64	+0.2
5,869,013	+		Psyr_4950	0.64	+0.0
5,869,014	-		Psyr_4950	0.64	-0.9
5,869,014	-		Psyr_4950	0.64	-0.3
5,869,014	-		Psyr_4950	0.64	-1.1
5,869,088	+		Psyr_4950	0.67	-0.1
5,869,088	+		Psyr_4950	0.67	+0.9
5,869,089	-		Psyr_4950	0.67	-1.4
5,869,089	-		Psyr_4950	0.67	-1.2
5,869,089	-		Psyr_4950	0.67	-0.1
5,869,089	-		Psyr_4950	0.67	-1.3
5,869,089	-		Psyr_4950	0.67	+2.1
5,869,089	-		Psyr_4950	0.67	-0.2
5,869,089	-		Psyr_4950	0.67	-1.7
5,869,089	-		Psyr_4950	0.67	-2.0
5,869,089	-		Psyr_4950	0.67	+0.1
5,869,089	-		Psyr_4950	0.67	+0.1
5,869,161	+		Psyr_4950	0.71	+1.7
5,869,161	+		Psyr_4950	0.71	+1.5
5,869,161	+		Psyr_4950	0.71	-1.6
5,869,161	+		Psyr_4950	0.71	+0.3
5,869,161	+		Psyr_4950	0.71	+0.1
5,869,161	+		Psyr_4950	0.71	+0.0
5,869,161	+		Psyr_4950	0.71	+0.2
5,869,161	+		Psyr_4950	0.71	+2.1
5,869,161	+		Psyr_4950	0.71	-0.7
5,869,162	-		Psyr_4950	0.71	+0.5
5,869,162	-		Psyr_4950	0.71	-0.3
5,869,162	-		Psyr_4950	0.71	+0.7
5,869,162	-		Psyr_4950	0.71	-0.0
5,869,162	-		Psyr_4950	0.71	-0.7
5,869,162	-		Psyr_4950	0.71	-0.9
5,869,162	-		Psyr_4950	0.71	-0.4
5,869,162	-		Psyr_4950	0.71	-0.3
5,869,162	-		Psyr_4950	0.71	+0.1
5,869,162	-		Psyr_4950	0.71	-0.3
5,869,162	-		Psyr_4950	0.71	+0.5
5,869,162	-		Psyr_4950	0.71	-1.5
5,869,162	-		Psyr_4950	0.71	+0.4
5,869,162	-		Psyr_4950	0.71	-0.4
5,869,162	-		Psyr_4950	0.71	+0.3
5,869,162	-		Psyr_4950	0.71	-0.2
5,869,205	+		Psyr_4950	0.73	+1.2
5,869,519	-		Psyr_4950	0.87	-1.2
5,869,655	+				-0.0
5,869,655	+				-0.3
5,869,771	+				-0.2
5,869,771	+				+0.1
5,869,772	-				+2.3
5,869,772	-				-2.5
5,869,787	+				+0.5
5,869,787	+				-0.6
5,869,811	+				-0.3
5,869,811	+				+0.6
5,869,811	+				+0.1
5,869,935	-		Psyr_4951	0.44	+0.4
5,869,936	+		Psyr_4951	0.44	-0.5
5,869,936	+		Psyr_4951	0.44	+1.1
5,869,936	+		Psyr_4951	0.44	-0.6
5,869,958	+		Psyr_4951	0.51	+0.3
5,869,958	+		Psyr_4951	0.51	+2.7
5,869,959	-		Psyr_4951	0.51	-0.6
5,869,959	-		Psyr_4951	0.51	-1.5
5,869,959	-		Psyr_4951	0.51	+0.7
5,870,071	+		Psyr_4951	0.86	+0.2
5,870,071	+		Psyr_4951	0.86	+3.9
5,870,071	+		Psyr_4951	0.86	-0.3
5,870,071	+		Psyr_4951	0.86	+2.1
5,870,072	-		Psyr_4951	0.87	+0.1
5,870,072	-		Psyr_4951	0.87	-0.6
5,870,076	-		Psyr_4951	0.88	-0.2
5,870,076	-		Psyr_4951	0.88	-0.7
5,870,076	-		Psyr_4951	0.88	+0.2
5,870,076	-		Psyr_4951	0.88	+1.4
5,870,106	+				+3.2
5,870,107	-				+1.1
5,870,107	-				-0.6
5,870,120	+				+0.2
5,870,126	+				-2.6
5,870,154	-				-0.1
5,870,154	-				+0.0
5,870,184	+				+1.3
5,870,184	+				-0.6
5,870,184	+				+3.0
5,870,184	+				-2.0
5,870,184	+				-0.6
5,870,184	+				-1.9
5,870,184	+				-1.5
5,870,184	+				+0.1
5,870,184	+				-0.8
5,870,185	-				+0.7
5,870,185	-				-2.6
5,870,185	-				+1.3
5,870,185	-				-1.0
5,870,190	+				-0.0
5,870,191	-				+0.3
5,870,191	-				-0.0
5,870,195	+				-0.9
5,870,196	-				-0.5
5,870,196	-				-0.4
5,870,267	-				+0.5
5,870,276	-				-0.3
5,870,304	+				+0.2
5,870,332	+				-0.2
5,870,332	+				+0.8
5,870,332	+				-0.9
5,870,332	+				+0.9
5,870,333	-				+0.5
5,870,333	-				+0.3
5,870,333	-				+1.4
5,870,333	-				+0.3
5,870,333	-				+1.5
5,870,333	-				+2.3
5,870,333	-				+0.4
5,870,335	-				+1.3
5,870,493	+				+0.2
5,870,493	+				-1.7
5,870,493	+				+0.7
5,870,493	+				-0.1
5,870,516	-				-1.5
5,870,517	+				-0.1
5,870,517	+				-0.7
5,870,517	+				-1.1
5,870,517	+				-1.3
5,870,518	-				-0.8
5,870,518	-				-0.6
5,870,518	-				-1.1
5,870,518	-				+0.5
5,870,518	-				+0.1
5,870,518	-				-0.5
5,870,518	-				-0.0
5,870,518	-				+0.8
5,870,518	-				-0.1
5,870,518	-				-1.8
5,870,554	+				+1.7
5,870,588	+		Psyr_4952	0.12	-0.1
5,870,588	+		Psyr_4952	0.12	+0.0
5,870,588	+		Psyr_4952	0.12	+0.2
5,870,589	-		Psyr_4952	0.12	-0.8
5,870,589	-		Psyr_4952	0.12	+2.7
5,870,613	+		Psyr_4952	0.15	-1.6
5,870,640	-		Psyr_4952	0.19	-1.4
5,870,640	-		Psyr_4952	0.19	-0.5
5,870,708	+		Psyr_4952	0.28	-0.6
5,870,708	+		Psyr_4952	0.28	-1.3
5,870,709	-		Psyr_4952	0.28	-1.1
5,870,807	+		Psyr_4952	0.41	+0.5
5,870,807	+		Psyr_4952	0.41	+0.6
5,870,808	-		Psyr_4952	0.41	-0.7
5,870,808	-		Psyr_4952	0.41	+0.1
5,870,951	+		Psyr_4952	0.60	-1.6
5,870,951	+		Psyr_4952	0.60	+0.3
5,870,952	-		Psyr_4952	0.61	-0.9
5,870,952	-		Psyr_4952	0.61	-0.7
5,870,952	-		Psyr_4952	0.61	-3.6
5,870,952	-		Psyr_4952	0.61	+0.6
5,870,952	-		Psyr_4952	0.61	+0.0
5,870,952	-		Psyr_4952	0.61	-2.4
5,870,955	+		Psyr_4952	0.61	-0.1
5,870,955	+		Psyr_4952	0.61	+0.5
5,870,955	+		Psyr_4952	0.61	-1.1
5,870,955	+		Psyr_4952	0.61	-2.3
5,870,955	+		Psyr_4952	0.61	-0.1
5,870,955	+		Psyr_4952	0.61	+3.7
5,870,955	+		Psyr_4952	0.61	+0.7
5,870,956	-		Psyr_4952	0.61	-1.1
5,870,956	-		Psyr_4952	0.61	-0.9
5,870,956	-		Psyr_4952	0.61	+0.7
5,870,956	-		Psyr_4952	0.61	-1.3
5,870,956	-		Psyr_4952	0.61	-0.1
5,870,956	-		Psyr_4952	0.61	-1.2
5,870,956	-		Psyr_4952	0.61	-1.0
5,870,956	-		Psyr_4952	0.61	+0.3
5,870,956	-		Psyr_4952	0.61	-1.5
5,870,963	+		Psyr_4952	0.62	+0.7
5,870,963	+		Psyr_4952	0.62	+0.0
5,870,963	+		Psyr_4952	0.62	-0.6
5,870,964	-		Psyr_4952	0.62	+1.3
5,870,964	-		Psyr_4952	0.62	-0.5
5,870,964	-		Psyr_4952	0.62	-1.3
5,870,964	-		Psyr_4952	0.62	+0.7
5,870,964	-		Psyr_4952	0.62	-0.1
5,870,978	+		Psyr_4952	0.64	+0.5
5,870,978	+		Psyr_4952	0.64	+1.7
5,870,979	-		Psyr_4952	0.64	-0.1
5,870,979	-		Psyr_4952	0.64	+1.3
5,870,979	-		Psyr_4952	0.64	+1.5
5,870,979	-		Psyr_4952	0.64	+1.7
5,870,979	-		Psyr_4952	0.64	-0.7