Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4811 and Psyr_4812 are separated by 234 nucleotides Psyr_4812 and Psyr_4813 are separated by 39 nucleotides Psyr_4813 and Psyr_4814 are separated by 130 nucleotides
Psyr_4811: Psyr_4811 - transcriptional regulator, AraC family, at 5,705,997 to 5,706,944
_4811
Psyr_4812: Psyr_4812 - sorbitol-binding protein / mannitol-binding protein, at 5,707,179 to 5,708,495
_4812
Psyr_4813: Psyr_4813 - Short-chain dehydrogenase/reductase SDR, at 5,708,535 to 5,709,308
_4813
Psyr_4814: Psyr_4814 - transcriptional regulator, DeoR family, at 5,709,439 to 5,710,263
_4814
Position (kb) 5707
5708
5709 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5706.180 kb on - strand, within Psyr_4811 at 5706.266 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.706 kb on + strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.707 kb on - strand, within Psyr_4811 at 5706.796 kb on + strand, within Psyr_4811 at 5706.843 kb on - strand, within Psyr_4811 at 5706.944 kb on + strand at 5706.944 kb on + strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.945 kb on - strand at 5706.969 kb on - strand at 5706.969 kb on - strand at 5706.993 kb on + strand at 5706.994 kb on - strand at 5707.039 kb on - strand at 5707.089 kb on - strand at 5707.089 kb on - strand at 5707.175 kb on + strand at 5707.175 kb on + strand at 5707.176 kb on - strand at 5707.430 kb on - strand, within Psyr_4812 at 5707.430 kb on - strand, within Psyr_4812 at 5707.446 kb on + strand, within Psyr_4812 at 5707.446 kb on + strand, within Psyr_4812 at 5707.447 kb on - strand, within Psyr_4812 at 5707.509 kb on + strand, within Psyr_4812 at 5707.523 kb on + strand, within Psyr_4812 at 5707.524 kb on - strand, within Psyr_4812 at 5707.569 kb on + strand, within Psyr_4812 at 5707.570 kb on - strand, within Psyr_4812 at 5707.570 kb on - strand, within Psyr_4812 at 5707.570 kb on - strand, within Psyr_4812 at 5707.570 kb on - strand, within Psyr_4812 at 5707.585 kb on - strand, within Psyr_4812 at 5707.601 kb on + strand, within Psyr_4812 at 5707.601 kb on + strand, within Psyr_4812 at 5707.601 kb on + strand, within Psyr_4812 at 5707.601 kb on + strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.602 kb on - strand, within Psyr_4812 at 5707.605 kb on + strand, within Psyr_4812 at 5707.605 kb on + strand, within Psyr_4812 at 5707.605 kb on + strand, within Psyr_4812 at 5707.605 kb on + strand, within Psyr_4812 at 5707.606 kb on - strand, within Psyr_4812 at 5707.606 kb on - strand, within Psyr_4812 at 5707.606 kb on - strand, within Psyr_4812 at 5707.606 kb on - strand, within Psyr_4812 at 5707.606 kb on - strand at 5707.606 kb on - strand, within Psyr_4812 at 5707.697 kb on + strand, within Psyr_4812 at 5707.697 kb on + strand, within Psyr_4812 at 5707.697 kb on + strand, within Psyr_4812 at 5707.698 kb on - strand, within Psyr_4812 at 5707.698 kb on - strand, within Psyr_4812 at 5707.885 kb on - strand, within Psyr_4812 at 5708.079 kb on + strand, within Psyr_4812 at 5708.079 kb on + strand, within Psyr_4812 at 5708.080 kb on - strand, within Psyr_4812 at 5708.123 kb on + strand, within Psyr_4812 at 5708.163 kb on + strand, within Psyr_4812 at 5708.163 kb on + strand, within Psyr_4812 at 5708.163 kb on + strand, within Psyr_4812 at 5708.163 kb on + strand, within Psyr_4812 at 5708.163 kb on + strand, within Psyr_4812 at 5708.163 kb on + strand at 5708.164 kb on - strand, within Psyr_4812 at 5708.164 kb on - strand, within Psyr_4812 at 5708.164 kb on - strand, within Psyr_4812 at 5708.164 kb on - strand, within Psyr_4812 at 5708.164 kb on - strand, within Psyr_4812 at 5708.164 kb on - strand, within Psyr_4812 at 5708.164 kb on - strand, within Psyr_4812 at 5708.164 kb on - strand, within Psyr_4812 at 5708.164 kb on - strand, within Psyr_4812 at 5708.229 kb on + strand, within Psyr_4812 at 5708.229 kb on + strand, within Psyr_4812 at 5708.229 kb on + strand, within Psyr_4812 at 5708.229 kb on + strand, within Psyr_4812 at 5708.230 kb on - strand, within Psyr_4812 at 5708.230 kb on - strand, within Psyr_4812 at 5708.230 kb on - strand, within Psyr_4812 at 5708.230 kb on - strand, within Psyr_4812 at 5708.241 kb on + strand, within Psyr_4812 at 5708.242 kb on - strand, within Psyr_4812 at 5708.329 kb on - strand, within Psyr_4812 at 5708.344 kb on - strand, within Psyr_4812 at 5708.344 kb on - strand, within Psyr_4812 at 5708.344 kb on - strand, within Psyr_4812 at 5708.408 kb on - strand at 5708.493 kb on + strand at 5708.493 kb on + strand at 5708.493 kb on + strand at 5708.494 kb on - strand at 5708.514 kb on + strand at 5708.515 kb on - strand at 5708.515 kb on - strand at 5708.610 kb on + strand at 5708.610 kb on + strand at 5708.610 kb on + strand at 5708.610 kb on + strand at 5708.610 kb on + strand at 5708.610 kb on + strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.611 kb on - strand at 5708.755 kb on + strand, within Psyr_4813 at 5708.755 kb on + strand, within Psyr_4813 at 5708.844 kb on + strand, within Psyr_4813 at 5708.991 kb on + strand, within Psyr_4813 at 5708.991 kb on + strand, within Psyr_4813 at 5708.992 kb on - strand, within Psyr_4813 at 5708.992 kb on - strand, within Psyr_4813 at 5709.258 kb on + strand at 5709.258 kb on + strand at 5709.259 kb on - strand at 5709.259 kb on - strand at 5709.276 kb on + strand at 5709.276 kb on + strand at 5709.276 kb on + strand at 5709.276 kb on + strand at 5709.276 kb on + strand at 5709.276 kb on + strand at 5709.276 kb on + strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.277 kb on - strand at 5709.322 kb on + strand at 5709.322 kb on + strand at 5709.322 kb on + strand at 5709.323 kb on - strand at 5709.323 kb on - strand at 5709.323 kb on - strand at 5709.383 kb on + strand at 5709.426 kb on + strand at 5709.426 kb on + strand at 5709.426 kb on + strand at 5709.427 kb on - strand at 5709.427 kb on - strand at 5709.427 kb on - strand at 5709.427 kb on - strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.480 kb on + strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand at 5709.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 5,706,180 - Psyr_4811 0.19 +1.2 5,706,266 + Psyr_4811 0.28 -1.6 5,706,706 + Psyr_4811 0.75 -0.0 5,706,706 + Psyr_4811 0.75 -1.5 5,706,706 + Psyr_4811 0.75 -2.6 5,706,706 + Psyr_4811 0.75 -0.6 5,706,706 + Psyr_4811 0.75 -1.5 5,706,707 - Psyr_4811 0.75 -0.0 5,706,707 - Psyr_4811 0.75 -0.6 5,706,707 - Psyr_4811 0.75 +1.0 5,706,707 - Psyr_4811 0.75 -1.3 5,706,707 - Psyr_4811 0.75 -0.2 5,706,707 - Psyr_4811 0.75 +0.3 5,706,796 + Psyr_4811 0.84 -0.0 5,706,843 - Psyr_4811 0.89 +0.5 5,706,944 + -1.1 5,706,944 + +0.8 5,706,945 - +1.0 5,706,945 - -0.0 5,706,945 - -0.5 5,706,945 - +0.1 5,706,945 - -0.7 5,706,945 - -0.9 5,706,945 - -0.5 5,706,969 - +0.6 5,706,969 - +0.1 5,706,993 + -0.6 5,706,994 - -0.1 5,707,039 - -0.0 5,707,089 - +0.4 5,707,089 - -1.5 5,707,175 + +0.5 5,707,175 + +2.1 5,707,176 - +1.3 5,707,430 - Psyr_4812 0.19 +0.5 5,707,430 - Psyr_4812 0.19 -0.2 5,707,446 + Psyr_4812 0.20 +1.0 5,707,446 + Psyr_4812 0.20 +0.1 5,707,447 - Psyr_4812 0.20 +2.7 5,707,509 + Psyr_4812 0.25 -0.9 5,707,523 + Psyr_4812 0.26 -1.5 5,707,524 - Psyr_4812 0.26 +1.7 5,707,569 + Psyr_4812 0.30 +0.6 5,707,570 - Psyr_4812 0.30 -1.5 5,707,570 - Psyr_4812 0.30 +0.7 5,707,570 - Psyr_4812 0.30 -1.0 5,707,570 - Psyr_4812 0.30 +0.6 5,707,585 - Psyr_4812 0.31 +0.7 5,707,601 + Psyr_4812 0.32 +2.3 5,707,601 + Psyr_4812 0.32 +0.4 5,707,601 + Psyr_4812 0.32 +0.2 5,707,601 + Psyr_4812 0.32 +0.4 5,707,602 - Psyr_4812 0.32 -0.0 5,707,602 - Psyr_4812 0.32 -0.5 5,707,602 - Psyr_4812 0.32 +0.1 5,707,602 - Psyr_4812 0.32 +0.3 5,707,602 - Psyr_4812 0.32 +5.1 5,707,602 - Psyr_4812 0.32 +2.6 5,707,602 - Psyr_4812 0.32 +1.7 5,707,602 - Psyr_4812 0.32 -1.3 5,707,602 - Psyr_4812 0.32 -0.1 5,707,602 - Psyr_4812 0.32 +0.2 5,707,602 - Psyr_4812 0.32 +1.4 5,707,605 + Psyr_4812 0.32 +0.5 5,707,605 + Psyr_4812 0.32 -0.7 5,707,605 + Psyr_4812 0.32 -0.8 5,707,605 + Psyr_4812 0.32 -0.1 5,707,606 - Psyr_4812 0.32 +0.3 5,707,606 - Psyr_4812 0.32 -0.6 5,707,606 - Psyr_4812 0.32 -0.1 5,707,606 - Psyr_4812 0.32 -0.6 5,707,606 - -0.7 5,707,606 - Psyr_4812 0.32 -0.1 5,707,697 + Psyr_4812 0.39 -0.1 5,707,697 + Psyr_4812 0.39 -1.0 5,707,697 + Psyr_4812 0.39 +1.6 5,707,698 - Psyr_4812 0.39 +1.1 5,707,698 - Psyr_4812 0.39 -1.2 5,707,885 - Psyr_4812 0.54 -1.5 5,708,079 + Psyr_4812 0.68 -0.5 5,708,079 + Psyr_4812 0.68 +0.5 5,708,080 - Psyr_4812 0.68 +0.4 5,708,123 + Psyr_4812 0.72 +1.0 5,708,163 + Psyr_4812 0.75 +0.1 5,708,163 + Psyr_4812 0.75 -0.5 5,708,163 + Psyr_4812 0.75 +0.2 5,708,163 + Psyr_4812 0.75 -1.3 5,708,163 + Psyr_4812 0.75 +1.0 5,708,163 + +0.9 5,708,164 - Psyr_4812 0.75 +0.4 5,708,164 - Psyr_4812 0.75 -0.4 5,708,164 - Psyr_4812 0.75 +1.0 5,708,164 - Psyr_4812 0.75 -0.9 5,708,164 - Psyr_4812 0.75 +1.2 5,708,164 - Psyr_4812 0.75 +0.2 5,708,164 - Psyr_4812 0.75 +0.2 5,708,164 - Psyr_4812 0.75 -0.6 5,708,164 - Psyr_4812 0.75 -0.6 5,708,229 + Psyr_4812 0.80 -1.0 5,708,229 + Psyr_4812 0.80 -2.7 5,708,229 + Psyr_4812 0.80 -0.5 5,708,229 + Psyr_4812 0.80 +0.9 5,708,230 - Psyr_4812 0.80 +0.7 5,708,230 - Psyr_4812 0.80 +0.0 5,708,230 - Psyr_4812 0.80 -1.3 5,708,230 - Psyr_4812 0.80 -1.3 5,708,241 + Psyr_4812 0.81 -0.7 5,708,242 - Psyr_4812 0.81 +0.5 5,708,329 - Psyr_4812 0.87 +0.9 5,708,344 - Psyr_4812 0.88 +0.4 5,708,344 - Psyr_4812 0.88 -0.2 5,708,344 - Psyr_4812 0.88 +3.5 5,708,408 - -0.1 5,708,493 + -1.3 5,708,493 + +1.1 5,708,493 + +0.7 5,708,494 - -0.4 5,708,514 + -1.1 5,708,515 - -0.6 5,708,515 - +0.6 5,708,610 + +0.4 5,708,610 + -0.1 5,708,610 + -0.7 5,708,610 + -1.0 5,708,610 + +1.0 5,708,610 + +1.0 5,708,611 - +0.4 5,708,611 - +0.9 5,708,611 - -0.9 5,708,611 - -0.7 5,708,611 - +3.2 5,708,611 - +4.3 5,708,611 - -0.4 5,708,611 - -1.2 5,708,611 - -0.9 5,708,611 - +1.1 5,708,611 - -3.2 5,708,755 + Psyr_4813 0.28 -0.3 5,708,755 + Psyr_4813 0.28 +0.3 5,708,844 + Psyr_4813 0.40 -0.6 5,708,991 + Psyr_4813 0.59 +0.3 5,708,991 + Psyr_4813 0.59 -0.9 5,708,992 - Psyr_4813 0.59 +0.4 5,708,992 - Psyr_4813 0.59 -1.4 5,709,258 + +1.7 5,709,258 + +0.4 5,709,259 - +0.1 5,709,259 - -1.1 5,709,276 + -0.5 5,709,276 + -1.5 5,709,276 + -0.4 5,709,276 + +1.1 5,709,276 + +0.4 5,709,276 + +0.1 5,709,276 + +0.7 5,709,277 - -0.7 5,709,277 - +0.4 5,709,277 - -0.3 5,709,277 - -0.0 5,709,277 - +1.1 5,709,277 - -0.2 5,709,277 - -0.7 5,709,277 - +0.6 5,709,277 - -2.4 5,709,277 - +0.3 5,709,277 - +0.1 5,709,277 - +0.3 5,709,277 - -1.9 5,709,322 + +1.7 5,709,322 + +1.1 5,709,322 + +0.1 5,709,323 - +1.7 5,709,323 - +1.0 5,709,323 - +1.4 5,709,383 + +1.2 5,709,426 + +0.0 5,709,426 + -0.1 5,709,426 + -0.2 5,709,427 - -0.7 5,709,427 - +0.1 5,709,427 - -0.8 5,709,427 - +4.5 5,709,480 + -0.0 5,709,480 + -0.1 5,709,480 + +0.5 5,709,480 + -0.3 5,709,480 + +0.1 5,709,480 + +0.7 5,709,480 + -0.4 5,709,480 + +1.7 5,709,480 + -0.3 5,709,480 + +0.0 5,709,480 + +3.6 5,709,480 + -2.0 5,709,480 + -1.2 5,709,480 + +0.1 5,709,480 + +0.1 5,709,480 + -1.3 5,709,480 + -0.6 5,709,480 + +0.9 5,709,481 - -0.3 5,709,481 - -1.1 5,709,481 - -0.2 5,709,481 - +1.2 5,709,481 - -2.1 5,709,481 - -1.9 5,709,481 - +1.3 5,709,481 - -0.0 5,709,481 - -0.8 5,709,481 - +0.7 5,709,481 - +1.1 5,709,481 - +1.0 5,709,481 - -1.3 5,709,481 - -0.1 5,709,481 - +0.5
Or see this region's nucleotide sequence