Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4766 and Psyr_4767 are separated by 123 nucleotides Psyr_4767 and Psyr_4768 overlap by 1 nucleotides
Psyr_4766: Psyr_4766 - L-threonine aldolase, at 5,641,228 to 5,642,268
_4766
Psyr_4767: Psyr_4767 - Peptidase U62, modulator of DNA gyrase, at 5,642,392 to 5,643,834
_4767
Psyr_4768: Psyr_4768 - conserved hypothetical protein, at 5,643,834 to 5,645,159
_4768
Position (kb) 5642
5643
5644 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5641.462 kb on + strand, within Psyr_4766 at 5641.462 kb on + strand, within Psyr_4766 at 5641.463 kb on - strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.681 kb on + strand, within Psyr_4766 at 5641.682 kb on - strand, within Psyr_4766 at 5642.161 kb on + strand, within Psyr_4766 at 5642.161 kb on + strand, within Psyr_4766 at 5642.161 kb on + strand, within Psyr_4766 at 5642.162 kb on - strand, within Psyr_4766 at 5642.276 kb on + strand at 5642.314 kb on + strand at 5642.462 kb on + strand at 5642.463 kb on - strand at 5642.467 kb on + strand at 5642.467 kb on + strand at 5642.467 kb on + strand at 5642.468 kb on - strand at 5642.581 kb on + strand, within Psyr_4767 at 5642.581 kb on + strand, within Psyr_4767 at 5642.716 kb on + strand, within Psyr_4767 at 5642.832 kb on - strand, within Psyr_4767 at 5642.860 kb on + strand, within Psyr_4767 at 5642.861 kb on - strand, within Psyr_4767 at 5642.933 kb on - strand, within Psyr_4767 at 5642.973 kb on + strand, within Psyr_4767 at 5642.974 kb on - strand, within Psyr_4767 at 5643.193 kb on + strand, within Psyr_4767 at 5643.193 kb on + strand, within Psyr_4767 at 5643.194 kb on - strand, within Psyr_4767 at 5643.241 kb on + strand, within Psyr_4767 at 5643.242 kb on - strand, within Psyr_4767 at 5643.263 kb on + strand, within Psyr_4767 at 5643.263 kb on + strand, within Psyr_4767 at 5643.302 kb on - strand, within Psyr_4767 at 5643.302 kb on - strand, within Psyr_4767 at 5643.651 kb on + strand, within Psyr_4767 at 5643.651 kb on + strand, within Psyr_4767 at 5643.652 kb on - strand, within Psyr_4767 at 5643.652 kb on - strand, within Psyr_4767 at 5643.652 kb on - strand, within Psyr_4767 at 5643.655 kb on + strand, within Psyr_4767 at 5643.656 kb on - strand, within Psyr_4767 at 5643.656 kb on - strand, within Psyr_4767 at 5643.656 kb on - strand, within Psyr_4767 at 5643.773 kb on + strand at 5643.773 kb on + strand at 5643.773 kb on + strand at 5643.774 kb on - strand at 5643.916 kb on - strand at 5644.257 kb on + strand, within Psyr_4768 at 5644.383 kb on + strand, within Psyr_4768 at 5644.383 kb on + strand, within Psyr_4768 at 5644.383 kb on + strand, within Psyr_4768 at 5644.492 kb on - strand, within Psyr_4768 at 5644.500 kb on + strand, within Psyr_4768 at 5644.501 kb on - strand, within Psyr_4768 at 5644.602 kb on + strand, within Psyr_4768 at 5644.603 kb on - strand, within Psyr_4768 at 5644.603 kb on - strand, within Psyr_4768 at 5644.767 kb on + strand, within Psyr_4768 at 5644.820 kb on + strand, within Psyr_4768 at 5644.821 kb on - strand, within Psyr_4768 at 5644.821 kb on - strand, within Psyr_4768
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 5,641,462 + Psyr_4766 0.22 -0.0 5,641,462 + Psyr_4766 0.22 -0.1 5,641,463 - Psyr_4766 0.23 +1.4 5,641,681 + Psyr_4766 0.44 -0.6 5,641,681 + Psyr_4766 0.44 -2.8 5,641,681 + Psyr_4766 0.44 +1.2 5,641,681 + Psyr_4766 0.44 +0.8 5,641,682 - Psyr_4766 0.44 -0.0 5,642,161 + Psyr_4766 0.90 -1.6 5,642,161 + Psyr_4766 0.90 +1.0 5,642,161 + Psyr_4766 0.90 -0.7 5,642,162 - Psyr_4766 0.90 +0.8 5,642,276 + -0.2 5,642,314 + -0.7 5,642,462 + +0.3 5,642,463 - -0.7 5,642,467 + -1.4 5,642,467 + +1.8 5,642,467 + -1.5 5,642,468 - +0.8 5,642,581 + Psyr_4767 0.13 -0.2 5,642,581 + Psyr_4767 0.13 -1.1 5,642,716 + Psyr_4767 0.22 -0.6 5,642,832 - Psyr_4767 0.30 -0.4 5,642,860 + Psyr_4767 0.32 +0.6 5,642,861 - Psyr_4767 0.33 +2.2 5,642,933 - Psyr_4767 0.37 -0.4 5,642,973 + Psyr_4767 0.40 +0.9 5,642,974 - Psyr_4767 0.40 +2.5 5,643,193 + Psyr_4767 0.56 +0.4 5,643,193 + Psyr_4767 0.56 -0.8 5,643,194 - Psyr_4767 0.56 +0.6 5,643,241 + Psyr_4767 0.59 +1.0 5,643,242 - Psyr_4767 0.59 -0.7 5,643,263 + Psyr_4767 0.60 -0.1 5,643,263 + Psyr_4767 0.60 -0.6 5,643,302 - Psyr_4767 0.63 +0.3 5,643,302 - Psyr_4767 0.63 +0.2 5,643,651 + Psyr_4767 0.87 -0.0 5,643,651 + Psyr_4767 0.87 -0.9 5,643,652 - Psyr_4767 0.87 +1.6 5,643,652 - Psyr_4767 0.87 -1.3 5,643,652 - Psyr_4767 0.87 +0.0 5,643,655 + Psyr_4767 0.88 -0.8 5,643,656 - Psyr_4767 0.88 +3.8 5,643,656 - Psyr_4767 0.88 -2.1 5,643,656 - Psyr_4767 0.88 +2.4 5,643,773 + -0.0 5,643,773 + -2.0 5,643,773 + +0.3 5,643,774 - -0.2 5,643,916 - +0.0 5,644,257 + Psyr_4768 0.32 +0.2 5,644,383 + Psyr_4768 0.41 +0.6 5,644,383 + Psyr_4768 0.41 -3.0 5,644,383 + Psyr_4768 0.41 -0.3 5,644,492 - Psyr_4768 0.50 -2.0 5,644,500 + Psyr_4768 0.50 +0.5 5,644,501 - Psyr_4768 0.50 -1.1 5,644,602 + Psyr_4768 0.58 -0.3 5,644,603 - Psyr_4768 0.58 -2.4 5,644,603 - Psyr_4768 0.58 +0.2 5,644,767 + Psyr_4768 0.70 -1.0 5,644,820 + Psyr_4768 0.74 -2.1 5,644,821 - Psyr_4768 0.74 +2.1 5,644,821 - Psyr_4768 0.74 +0.9
Or see this region's nucleotide sequence