Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4723

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,600,603	+				-0.3
5,600,604	-				-1.7
5,600,674	+				+0.2
5,600,690	+				-0.6
5,600,690	+				-0.6
5,600,742	+				+0.7
5,600,742	+				-0.7
5,600,742	+				-0.4
5,600,742	+				-0.9
5,600,742	+				+0.0
5,600,742	+				+0.4
5,600,742	+				+0.3
5,600,742	+				-1.3
5,600,742	+				+1.7
5,600,742	+				-1.7
5,600,742	+				+0.7
5,600,742	+				-0.6
5,600,743	-				+0.2
5,600,743	-				-1.0
5,600,743	-				-1.2
5,600,743	-				+0.0
5,600,743	-				-1.6
5,600,819	+				+0.4
5,600,819	+				+1.0
5,600,819	+				-0.2
5,600,819	+				-1.0
5,600,819	+				+0.3
5,600,819	+				+0.5
5,600,819	+				-0.3
5,600,819	+				-0.7
5,600,819	+				-1.4
5,600,819	+				-0.6
5,600,819	+				-1.0
5,600,819	+				-3.0
5,600,819	+				-1.9
5,600,819	+				+0.4
5,600,819	+				-0.3
5,600,819	+				-2.0
5,600,819	+				-0.7
5,600,819	+				+1.9
5,600,820	-				+0.8
5,600,820	-				-0.3
5,600,820	-				+0.2
5,600,820	-				+0.1
5,600,820	-				+2.0
5,600,820	-				+0.6
5,600,820	-				+0.0
5,600,820	-				+0.7
5,600,820	-				+0.2
5,600,820	-				-1.7
5,600,820	-				+0.4
5,600,820	-				-1.9
5,600,820	-				-1.0
5,600,820	-				+2.9
5,600,820	-				+0.1
5,600,820	-				-0.1
5,600,820	-				-0.4
5,600,820	-				-2.3
5,600,820	-				+1.5
5,600,823	+				+0.2
5,600,823	+				+0.2
5,600,823	+				-1.0
5,600,823	+				-1.1
5,600,823	+				+0.7
5,600,823	+				-0.8
5,600,823	+				-0.7
5,600,823	+				-1.6
5,600,823	+				-0.6
5,600,823	+				-0.6
5,600,823	+				-2.7
5,600,823	+				+0.1
5,600,824	-				-0.4
5,600,824	-				-1.1
5,600,824	-				+0.5
5,600,824	-				+0.3
5,600,824	-				-1.1
5,600,824	-				+2.9
5,600,824	-				-0.6
5,600,824	-				+1.5
5,600,824	-				-1.6
5,600,824	-				-0.2
5,600,824	-				+0.9
5,600,824	-				+0.4
5,600,824	-				-1.1
5,600,824	-				-1.0
5,600,824	-				-1.0
5,600,824	-				+0.8
5,600,824	-				-2.0
5,600,828	-				+1.6
5,601,138	+		Psyr_4722	0.28	+0.6
5,601,139	-		Psyr_4722	0.28	-0.7
5,601,351	+		Psyr_4722	0.66	-1.2
5,601,351	+		Psyr_4722	0.66	+0.1
5,601,351	+		Psyr_4722	0.66	-0.2
5,601,351	+		Psyr_4722	0.66	-0.3
5,601,351	+		Psyr_4722	0.66	+0.6
5,601,352	-		Psyr_4722	0.66	-0.2
5,601,352	-		Psyr_4722	0.66	-0.2
5,601,352	-		Psyr_4722	0.66	-0.8
5,601,473	-		Psyr_4722	0.87	-1.0
5,601,473	-		Psyr_4722	0.87	+0.1
5,601,553	+				+0.6
5,601,553	+				+0.0
5,601,554	-				+0.6
5,601,554	-				+0.4
5,601,554	-				-0.0
5,601,554	-				-0.3
5,601,554	-				-0.4
5,601,555	+				-0.3
5,601,555	+				+0.5
5,601,556	-				+0.9
5,601,556	-				+1.1
5,601,556	-				+0.0
5,601,574	+				-1.7
5,601,574	+				+0.4
5,601,574	+				-1.2
5,601,574	+				+0.8
5,601,574	+				-1.4
5,601,574	+				+0.4
5,601,574	+				-0.3
5,601,574	+				+0.4
5,601,574	+				+0.9
5,601,574	+				-1.2
5,601,574	+				+0.9
5,601,574	+				+0.7
5,601,574	+				+1.1
5,601,574	+				-0.5
5,601,574	+				+1.5
5,601,574	+				+0.0
5,601,575	-				-0.5
5,601,575	-				-0.4
5,601,575	-				+0.7
5,601,575	-				+1.4
5,601,575	-				+0.9
5,601,575	-				-0.3
5,601,575	-				+0.9
5,601,575	-				+5.7
5,601,575	-				+1.6
5,601,576	+				-0.3
5,601,576	+				+1.1
5,601,576	+				+0.0
5,601,576	+				-2.8
5,601,576	+				-0.4
5,601,576	+				-1.7
5,601,576	+				+0.8
5,601,576	+				-0.5
5,601,576	+				-1.5
5,601,576	+				-1.0
5,601,576	+				-1.9
5,601,576	+				+0.9
5,601,576	+				+1.8
5,601,577	-				+0.1
5,601,577	-				-0.4
5,601,577	-				+0.6
5,601,577	-				-2.4
5,601,577	-				-1.6
5,601,577	-				-0.1
5,601,577	-				+0.7
5,601,577	-				-1.1
5,601,590	+				+0.0
5,601,591	-				-0.8
5,601,591	-				-1.9
5,601,591	-				-1.5
5,601,591	-				-1.9
5,601,606	+				+2.1
5,601,607	-				+0.1
5,601,676	+		Psyr_4723	0.14	-0.7
5,601,677	-		Psyr_4723	0.15	+0.0
5,601,740	+		Psyr_4723	0.20	+0.7
5,601,740	+		Psyr_4723	0.20	+0.1
5,601,740	+		Psyr_4723	0.20	+0.4
5,601,741	-		Psyr_4723	0.21	+0.7
5,601,765	-		Psyr_4723	0.23	-0.2
5,601,767	+		Psyr_4723	0.23	+0.2
5,601,768	-		Psyr_4723	0.23	+0.7
5,601,768	-		Psyr_4723	0.23	+0.6
5,601,861	+		Psyr_4723	0.32	-0.2
5,601,861	+		Psyr_4723	0.32	-0.7
5,601,924	+		Psyr_4723	0.38	+0.5
5,601,924	+		Psyr_4723	0.38	+0.7
5,601,924	+		Psyr_4723	0.38	-0.0
5,601,924	+		Psyr_4723	0.38	-0.5
5,601,925	-		Psyr_4723	0.38	+1.1
5,601,937	+		Psyr_4723	0.39	-0.6
5,601,938	-		Psyr_4723	0.39	-0.1
5,602,030	+		Psyr_4723	0.48	+0.0
5,602,031	-		Psyr_4723	0.48	-0.4
5,602,031	-		Psyr_4723	0.48	-1.7
5,602,031	-		Psyr_4723	0.48	+1.2
5,602,031	-		Psyr_4723	0.48	-1.1
5,602,077	-		Psyr_4723	0.52	+1.4
5,602,181	+		Psyr_4723	0.62	+0.7
5,602,181	+		Psyr_4723	0.62	-0.6
5,602,181	+		Psyr_4723	0.62	+0.7
5,602,181	+		Psyr_4723	0.62	-1.1
5,602,182	-		Psyr_4723	0.62	+0.6
5,602,182	-		Psyr_4723	0.62	+0.8
5,602,182	-		Psyr_4723	0.62	+1.1
5,602,182	-		Psyr_4723	0.62	-0.7
5,602,271	+		Psyr_4723	0.71	-1.1
5,602,384	+		Psyr_4723	0.81	+1.7
5,602,385	-		Psyr_4723	0.81	-0.9
5,602,429	+		Psyr_4723	0.86	+1.2
5,602,429	+		Psyr_4723	0.86	+1.5
5,602,430	-		Psyr_4723	0.86	+0.0
5,602,430	-		Psyr_4723	0.86	+0.1
5,602,492	+				+2.6
5,602,492	+				-1.3
5,602,493	-				+0.0
5,602,493	-				+0.7
5,602,493	-				-1.5
5,602,521	-				+2.6
5,602,526	+				-0.1
5,602,527	-				+0.9
5,602,527	-				+3.1
5,602,527	-				+2.8
5,602,528	+				-1.4
5,602,528	+				-0.7
5,602,529	-				-0.3
5,602,582	+				-0.4
5,602,617	+				+0.6
5,602,617	+				-0.2
5,602,617	+				+1.3
5,602,618	-				-0.6
5,602,618	-				-2.6
5,602,618	-				-1.0
5,602,725	+		Psyr_4724	0.10	+0.6
5,602,726	-		Psyr_4724	0.10	-2.0
5,602,726	-		Psyr_4724	0.10	-2.3
5,602,852	+		Psyr_4724	0.24	-1.6
5,603,003	-		Psyr_4724	0.40	+0.6
5,603,275	+		Psyr_4724	0.70	+0.3
5,603,275	+		Psyr_4724	0.70	+1.0
5,603,276	-		Psyr_4724	0.70	+0.4
5,603,276	-		Psyr_4724	0.70	-0.8
5,603,276	-		Psyr_4724	0.70	+1.0
5,603,276	-		Psyr_4724	0.70	-0.3
5,603,475	-				+0.6
5,603,475	-				+0.4
5,603,475	-				+0.1
5,603,485	-				+1.3
5,603,556	+				-0.1
5,603,556	+				+0.3
5,603,557	-				-0.3
5,603,560	-				-0.5
5,603,560	-				-1.0