Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4677

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,541,951	+		Psyr_4675	0.80	+0.6
5,541,951	+		Psyr_4675	0.80	-0.1
5,541,952	-		Psyr_4675	0.80	-3.0
5,542,015	+		Psyr_4675	0.83	-0.2
5,542,031	+		Psyr_4675	0.84	-0.2
5,542,031	+		Psyr_4675	0.84	+1.0
5,542,088	-		Psyr_4675	0.87	+0.6
5,542,229	+				+0.7
5,542,229	+				+0.4
5,542,229	+				+1.9
5,542,230	-				-0.8
5,542,230	-				+0.6
5,542,230	-				+0.1
5,542,230	-				-0.4
5,542,381	+				+1.1
5,542,381	+				-1.5
5,542,381	+				-0.5
5,542,381	+				-0.3
5,542,381	+				-0.1
5,542,381	+				+0.5
5,542,402	+		Psyr_4676	0.14	+0.1
5,542,402	+		Psyr_4676	0.14	-1.1
5,542,402	+		Psyr_4676	0.14	-1.0
5,542,402	+		Psyr_4676	0.14	+0.2
5,542,402	+		Psyr_4676	0.14	-0.2
5,542,402	+		Psyr_4676	0.14	+0.6
5,542,402	+		Psyr_4676	0.14	+1.6
5,542,402	+		Psyr_4676	0.14	+0.6
5,542,402	+		Psyr_4676	0.14	+2.3
5,542,402	+		Psyr_4676	0.14	-0.3
5,542,403	-		Psyr_4676	0.14	-2.2
5,542,403	-		Psyr_4676	0.14	+0.3
5,542,403	-		Psyr_4676	0.14	-0.3
5,542,403	-		Psyr_4676	0.14	+1.8
5,542,403	-		Psyr_4676	0.14	+0.6
5,542,403	-		Psyr_4676	0.14	+1.4
5,542,403	-		Psyr_4676	0.14	+0.6
5,542,429	+		Psyr_4676	0.30	-1.0
5,542,429	+		Psyr_4676	0.30	-1.6
5,542,430	-		Psyr_4676	0.31	+0.0
5,542,430	-		Psyr_4676	0.31	-0.0
5,542,430	-		Psyr_4676	0.31	+1.9
5,542,452	-		Psyr_4676	0.44	+1.1
5,542,479	+		Psyr_4676	0.61	-1.4
5,542,479	+		Psyr_4676	0.61	-1.2
5,542,479	+		Psyr_4676	0.61	-0.5
5,542,479	+		Psyr_4676	0.61	+0.4
5,542,480	-		Psyr_4676	0.62	-0.0
5,542,527	-				-0.0
5,542,576	+				+1.1
5,542,577	-				-0.6
5,542,577	-				-0.8
5,542,635	-				+0.6
5,542,811	+				+0.8
5,542,811	+				+1.0
5,542,812	-				+1.2
5,542,812	-				+0.8
5,542,812	-				+0.6
5,542,824	+				+0.2
5,542,824	+				+1.0
5,542,824	+				-1.6
5,542,824	+				+1.1
5,542,825	-				-2.0
5,542,825	-				+2.8
5,542,825	-				-0.6
5,542,848	+				+0.1
5,542,867	+				+1.3
5,542,911	+				-1.8
5,542,911	+				-2.2
5,542,911	+				+1.0
5,542,912	-				+0.6
5,542,970	+				-0.0
5,542,970	+				+0.2
5,542,970	+				-1.0
5,542,970	+				+0.9
5,542,970	+				+0.6
5,542,970	+				+0.2
5,542,971	-				-0.0
5,543,039	+				-2.6
5,543,039	+				+0.5
5,543,039	+				-0.1
5,543,040	-				-1.5
5,543,040	-				+1.7
5,543,040	-				-1.5
5,543,040	-				-3.1
5,543,040	-				-0.3
5,543,069	+				-0.2
5,543,069	+				-0.3
5,543,126	+		Psyr_4677	0.10	+0.2
5,543,126	+		Psyr_4677	0.10	+1.0
5,543,126	+		Psyr_4677	0.10	+1.0
5,543,126	+		Psyr_4677	0.10	-0.5
5,543,126	+		Psyr_4677	0.10	+0.7
5,543,126	+		Psyr_4677	0.10	-0.5
5,543,126	+		Psyr_4677	0.10	+1.2
5,543,126	+		Psyr_4677	0.10	-1.0
5,543,126	+		Psyr_4677	0.10	-2.2
5,543,126	+		Psyr_4677	0.10	-1.6
5,543,126	+		Psyr_4677	0.10	-0.2
5,543,126	+		Psyr_4677	0.10	+0.9
5,543,126	+		Psyr_4677	0.10	-0.2
5,543,127	-		Psyr_4677	0.10	+1.6
5,543,127	-		Psyr_4677	0.10	-0.2
5,543,127	-		Psyr_4677	0.10	-2.9
5,543,127	-		Psyr_4677	0.10	-2.3
5,543,127	-		Psyr_4677	0.10	+1.2
5,543,127	-		Psyr_4677	0.10	+0.8
5,543,127	-		Psyr_4677	0.10	+0.3
5,543,127	-		Psyr_4677	0.10	-0.7
5,543,127	-		Psyr_4677	0.10	-0.2
5,543,127	-		Psyr_4677	0.10	+0.1
5,543,132	+		Psyr_4677	0.11	+0.3
5,543,133	-		Psyr_4677	0.11	-0.4
5,543,160	-		Psyr_4677	0.12	-0.9
5,543,160	-		Psyr_4677	0.12	+0.7
5,543,160	-		Psyr_4677	0.12	-0.3
5,543,160	-		Psyr_4677	0.12	-0.8
5,543,160	-		Psyr_4677	0.12	+0.3
5,543,330	+		Psyr_4677	0.22	+1.6
5,543,330	+		Psyr_4677	0.22	-1.1
5,543,331	-		Psyr_4677	0.22	+0.5
5,543,331	-		Psyr_4677	0.22	-0.4
5,543,331	-		Psyr_4677	0.22	-0.2
5,543,331	-		Psyr_4677	0.22	+0.5
5,543,331	-		Psyr_4677	0.22	-0.4
5,543,331	-		Psyr_4677	0.22	-1.4
5,543,402	+		Psyr_4677	0.26	-1.6
5,543,402	+		Psyr_4677	0.26	-0.1
5,543,402	+		Psyr_4677	0.26	+1.6
5,543,402	+		Psyr_4677	0.26	-0.3
5,543,402	+		Psyr_4677	0.26	+0.7
5,543,403	-		Psyr_4677	0.26	-0.8
5,543,403	-		Psyr_4677	0.26	-0.6
5,543,416	-		Psyr_4677	0.26	-0.4
5,543,416	-		Psyr_4677	0.26	-1.2
5,543,459	+		Psyr_4677	0.29	+0.1
5,543,459	+		Psyr_4677	0.29	-0.2
5,543,459	+		Psyr_4677	0.29	+0.8
5,543,459	+		Psyr_4677	0.29	-0.8
5,543,460	-		Psyr_4677	0.29	+1.6
5,543,460	-		Psyr_4677	0.29	+1.3
5,543,460	-		Psyr_4677	0.29	+0.2
5,543,624	+		Psyr_4677	0.38	+0.6
5,543,624	+		Psyr_4677	0.38	+1.8
5,543,624	+		Psyr_4677	0.38	-1.9
5,543,624	+		Psyr_4677	0.38	+0.7
5,543,625	-				+3.1
5,543,625	-		Psyr_4677	0.38	-0.6
5,543,772	-		Psyr_4677	0.46	-1.0
5,543,772	-		Psyr_4677	0.46	+0.6
5,543,772	-		Psyr_4677	0.46	-0.4
5,543,789	+		Psyr_4677	0.47	-0.3
5,543,840	+		Psyr_4677	0.50	-0.7
5,543,840	+		Psyr_4677	0.50	-2.2
5,543,841	-		Psyr_4677	0.50	-0.4
5,543,841	-		Psyr_4677	0.50	-0.4
5,543,841	-		Psyr_4677	0.50	+0.0
5,544,257	+		Psyr_4677	0.74	-1.9
5,544,257	+		Psyr_4677	0.74	+0.3
5,544,257	+		Psyr_4677	0.74	-1.4
5,544,257	+				-0.0
5,544,257	+		Psyr_4677	0.74	-1.2
5,544,257	+		Psyr_4677	0.74	-0.4
5,544,257	+		Psyr_4677	0.74	+1.0
5,544,257	+		Psyr_4677	0.74	+2.3
5,544,257	+		Psyr_4677	0.74	-0.4
5,544,257	+		Psyr_4677	0.74	+0.1
5,544,257	+		Psyr_4677	0.74	-0.4
5,544,257	+		Psyr_4677	0.74	+0.6
5,544,258	-		Psyr_4677	0.74	-0.0
5,544,258	-		Psyr_4677	0.74	-0.0
5,544,258	-		Psyr_4677	0.74	+1.4
5,544,261	+		Psyr_4677	0.74	-0.3
5,544,261	+		Psyr_4677	0.74	+0.6
5,544,261	+		Psyr_4677	0.74	-0.3
5,544,261	+		Psyr_4677	0.74	-0.4
5,544,261	+		Psyr_4677	0.74	+0.6
5,544,261	+		Psyr_4677	0.74	-3.1
5,544,261	+		Psyr_4677	0.74	-0.9
5,544,262	-		Psyr_4677	0.74	+0.9
5,544,262	-		Psyr_4677	0.74	+0.6
5,544,262	-		Psyr_4677	0.74	+0.7
5,544,262	-		Psyr_4677	0.74	-0.4
5,544,262	-		Psyr_4677	0.74	-0.5
5,544,439	+		Psyr_4677	0.84	-0.9
5,544,440	-		Psyr_4677	0.84	-0.2
5,544,464	+		Psyr_4677	0.85	-1.0
5,544,465	-		Psyr_4677	0.85	+1.2
5,544,471	+		Psyr_4677	0.86	+0.7
5,544,471	+		Psyr_4677	0.86	-0.6
5,544,471	+		Psyr_4677	0.86	+0.7
5,544,472	-		Psyr_4677	0.86	+0.2
5,544,472	-		Psyr_4677	0.86	-1.0
5,544,472	-		Psyr_4677	0.86	-0.9
5,544,472	-		Psyr_4677	0.86	+0.8
5,544,473	+		Psyr_4677	0.86	+1.6
5,544,473	+		Psyr_4677	0.86	-2.1
5,544,473	+		Psyr_4677	0.86	-1.5
5,544,473	+		Psyr_4677	0.86	-0.6
5,544,474	-		Psyr_4677	0.86	-1.8
5,544,580	-				+0.4
5,544,711	+				-0.4
5,544,711	+				+0.3
5,544,713	+				+1.1
5,544,713	+				-0.9
5,544,713	+				-2.8
5,544,713	+				-0.2
5,544,713	+				+0.6
5,544,714	-				+0.9
5,544,857	+				+0.9
5,544,880	+				-0.8
5,544,881	-				-0.3
5,544,881	-				+0.9
5,544,984	+				-0.0
5,544,984	+				+1.0
5,544,984	+				-1.1
5,544,984	+				-0.0
5,544,984	+				-2.4
5,544,984	+				-0.0
5,544,984	+				+1.1
5,544,984	+				-1.8
5,544,985	-				-0.5
5,544,985	-				+1.7
5,544,985	-				+0.9
5,545,161	+		Psyr_4678	0.21	-1.8
5,545,161	+		Psyr_4678	0.21	-1.2
5,545,392	+		Psyr_4678	0.38	+0.8
5,545,392	+		Psyr_4678	0.38	+1.6
5,545,392	+		Psyr_4678	0.38	-0.2
5,545,392	+		Psyr_4678	0.38	+0.9
5,545,392	+		Psyr_4678	0.38	-1.6
5,545,392	+		Psyr_4678	0.38	+3.7
5,545,392	+		Psyr_4678	0.38	-0.5
5,545,392	+		Psyr_4678	0.38	-0.2
5,545,392	+		Psyr_4678	0.38	+0.4
5,545,392	+		Psyr_4678	0.38	+0.2
5,545,392	+		Psyr_4678	0.38	-0.4
5,545,392	+		Psyr_4678	0.38	-2.5
5,545,393	-		Psyr_4678	0.38	-0.0
5,545,393	-		Psyr_4678	0.38	-0.4
5,545,393	-		Psyr_4678	0.38	-1.3
5,545,393	-		Psyr_4678	0.38	+0.8
5,545,393	-		Psyr_4678	0.38	-2.0
5,545,393	-		Psyr_4678	0.38	-1.2
5,545,393	-		Psyr_4678	0.38	-0.4
5,545,393	-		Psyr_4678	0.38	-0.7
5,545,393	-		Psyr_4678	0.38	+0.1
5,545,393	-		Psyr_4678	0.38	+0.1
5,545,393	-		Psyr_4678	0.38	-0.0
5,545,393	-		Psyr_4678	0.38	+0.3
5,545,393	-		Psyr_4678	0.38	-1.8
5,545,393	-		Psyr_4678	0.38	+1.9
5,545,393	-		Psyr_4678	0.38	+1.9
5,545,393	-		Psyr_4678	0.38	-1.0
5,545,393	-		Psyr_4678	0.38	-1.2
5,545,393	-		Psyr_4678	0.38	+0.6
5,545,477	-		Psyr_4678	0.45	-1.2
5,545,477	-		Psyr_4678	0.45	-1.2
5,545,674	+		Psyr_4678	0.60	-0.8
5,545,675	-		Psyr_4678	0.60	-2.0