Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4589

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4587 and Psyr_4588 overlap by 11 nucleotidesPsyr_4588 and Psyr_4589 overlap by 4 nucleotidesPsyr_4589 and Psyr_4590 overlap by 4 nucleotides Psyr_4587: Psyr_4587 - Baseplate J-like protein, at 5,447,862 to 5,448,902 _4587 Psyr_4588: Psyr_4588 - Phage GP46, at 5,448,892 to 5,449,290 _4588 Psyr_4589: Psyr_4589 - Phage baseplate assembly protein V, at 5,449,287 to 5,449,799 _4589 Psyr_4590: Psyr_4590 - Bacteriophage Mu P, at 5,449,796 to 5,450,923 _4590 Position (kb) 5449 5450Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5448.295 kb on - strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.316 kb on + strand, within Psyr_4587at 5448.317 kb on - strand, within Psyr_4587at 5448.317 kb on - strand, within Psyr_4587at 5448.317 kb on - strand, within Psyr_4587at 5448.317 kb on - strand, within Psyr_4587at 5448.574 kb on + strand, within Psyr_4587at 5448.772 kb on + strand, within Psyr_4587at 5448.884 kb on + strandat 5448.884 kb on + strandat 5448.884 kb on + strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.902 kb on + strandat 5448.902 kb on + strandat 5448.903 kb on - strandat 5448.903 kb on - strandat 5449.005 kb on + strand, within Psyr_4588at 5449.067 kb on + strand, within Psyr_4588at 5449.067 kb on + strand, within Psyr_4588at 5449.067 kb on + strand, within Psyr_4588at 5449.067 kb on + strand, within Psyr_4588at 5449.067 kb on + strand, within Psyr_4588at 5449.068 kb on - strand, within Psyr_4588at 5449.068 kb on - strand, within Psyr_4588at 5449.068 kb on - strand, within Psyr_4588at 5449.367 kb on + strand, within Psyr_4589at 5449.368 kb on - strand, within Psyr_4589at 5449.528 kb on + strand, within Psyr_4589at 5449.528 kb on + strand, within Psyr_4589at 5449.528 kb on + strand, within Psyr_4589at 5449.528 kb on + strand, within Psyr_4589at 5449.529 kb on - strand, within Psyr_4589at 5449.529 kb on - strand, within Psyr_4589at 5449.529 kb on - strand, within Psyr_4589at 5449.529 kb on - strand, within Psyr_4589at 5449.529 kb on - strand, within Psyr_4589at 5449.529 kb on - strand, within Psyr_4589at 5449.632 kb on - strand, within Psyr_4589at 5449.836 kb on + strandat 5449.836 kb on + strandat 5449.837 kb on - strandat 5449.837 kb on - strandat 5449.837 kb on - strandat 5449.837 kb on - strandat 5449.953 kb on + strand, within Psyr_4590at 5449.953 kb on + strand, within Psyr_4590at 5449.954 kb on - strand, within Psyr_4590at 5449.954 kb on - strand, within Psyr_4590at 5449.987 kb on + strand, within Psyr_4590at 5450.026 kb on + strand, within Psyr_4590at 5450.026 kb on + strand, within Psyr_4590at 5450.073 kb on + strand, within Psyr_4590at 5450.073 kb on + strand, within Psyr_4590at 5450.073 kb on + strand, within Psyr_4590at 5450.073 kb on + strand, within Psyr_4590at 5450.073 kb on + strand, within Psyr_4590at 5450.074 kb on - strand, within Psyr_4590at 5450.074 kb on - strand, within Psyr_4590at 5450.074 kb on - strand, within Psyr_4590at 5450.074 kb on - strand, within Psyr_4590at 5450.192 kb on - strand, within Psyr_4590at 5450.688 kb on + strand, within Psyr_4590at 5450.688 kb on + strand, within Psyr_4590at 5450.689 kb on - strand, within Psyr_4590at 5450.689 kb on - strand, within Psyr_4590at 5450.689 kb on - strand, within Psyr_4590at 5450.689 kb on - strand, within Psyr_4590at 5450.689 kb on - strand, within Psyr_4590at 5450.689 kb on - strand, within Psyr_4590

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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5,448,295 - Psyr_4587 0.42 -1.7
5,448,316 + Psyr_4587 0.44 -1.2
5,448,316 + Psyr_4587 0.44 -0.1
5,448,316 + Psyr_4587 0.44 -1.8
5,448,316 + Psyr_4587 0.44 +1.1
5,448,316 + Psyr_4587 0.44 -0.1
5,448,316 + Psyr_4587 0.44 +0.6
5,448,316 + Psyr_4587 0.44 -0.2
5,448,316 + Psyr_4587 0.44 +1.5
5,448,317 - Psyr_4587 0.44 +0.8
5,448,317 - Psyr_4587 0.44 -0.2
5,448,317 - Psyr_4587 0.44 +0.9
5,448,317 - Psyr_4587 0.44 +1.3
5,448,574 + Psyr_4587 0.68 +0.2
5,448,772 + Psyr_4587 0.87 -1.9
5,448,884 + +0.7
5,448,884 + +0.5
5,448,884 + +0.8
5,448,885 - +1.5
5,448,885 - +1.2
5,448,885 - -1.1
5,448,885 - -0.8
5,448,885 - -0.2
5,448,885 - +0.7
5,448,885 - -0.2
5,448,885 - -0.3
5,448,885 - -0.7
5,448,885 - -1.4
5,448,885 - -0.7
5,448,885 - -0.5
5,448,885 - -2.1
5,448,885 - -0.6
5,448,885 - -0.4
5,448,902 + +0.5
5,448,902 + -1.3
5,448,903 - -0.5
5,448,903 - +2.0
5,449,005 + Psyr_4588 0.28 -1.6
5,449,067 + Psyr_4588 0.44 -0.1
5,449,067 + Psyr_4588 0.44 +0.2
5,449,067 + Psyr_4588 0.44 +1.1
5,449,067 + Psyr_4588 0.44 -2.4
5,449,067 + Psyr_4588 0.44 -1.8
5,449,068 - Psyr_4588 0.44 +1.6
5,449,068 - Psyr_4588 0.44 -0.7
5,449,068 - Psyr_4588 0.44 +0.4
5,449,367 + Psyr_4589 0.16 +0.8
5,449,368 - Psyr_4589 0.16 -1.1
5,449,528 + Psyr_4589 0.47 +1.5
5,449,528 + Psyr_4589 0.47 -0.8
5,449,528 + Psyr_4589 0.47 -2.6
5,449,528 + Psyr_4589 0.47 -0.1
5,449,529 - Psyr_4589 0.47 -0.6
5,449,529 - Psyr_4589 0.47 -1.3
5,449,529 - Psyr_4589 0.47 -0.6
5,449,529 - Psyr_4589 0.47 -0.8
5,449,529 - Psyr_4589 0.47 -1.7
5,449,529 - Psyr_4589 0.47 +0.5
5,449,632 - Psyr_4589 0.67 -1.1
5,449,836 + -0.1
5,449,836 + +0.9
5,449,837 - -0.9
5,449,837 - -1.6
5,449,837 - -0.2
5,449,837 - -0.1
5,449,953 + Psyr_4590 0.14 +0.5
5,449,953 + Psyr_4590 0.14 +0.3
5,449,954 - Psyr_4590 0.14 -0.5
5,449,954 - Psyr_4590 0.14 +0.1
5,449,987 + Psyr_4590 0.17 +3.7
5,450,026 + Psyr_4590 0.20 -0.5
5,450,026 + Psyr_4590 0.20 +0.5
5,450,073 + Psyr_4590 0.25 -0.1
5,450,073 + Psyr_4590 0.25 +0.2
5,450,073 + Psyr_4590 0.25 +0.2
5,450,073 + Psyr_4590 0.25 +0.1
5,450,073 + Psyr_4590 0.25 +0.8
5,450,074 - Psyr_4590 0.25 +0.5
5,450,074 - Psyr_4590 0.25 +0.4
5,450,074 - Psyr_4590 0.25 -2.9
5,450,074 - Psyr_4590 0.25 +1.5
5,450,192 - Psyr_4590 0.35 +0.4
5,450,688 + Psyr_4590 0.79 -1.0
5,450,688 + Psyr_4590 0.79 +0.4
5,450,689 - Psyr_4590 0.79 -1.9
5,450,689 - Psyr_4590 0.79 +0.9
5,450,689 - Psyr_4590 0.79 +0.6
5,450,689 - Psyr_4590 0.79 -0.1
5,450,689 - Psyr_4590 0.79 +0.1
5,450,689 - Psyr_4590 0.79 -0.4

Or see this region's nucleotide sequence