Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4572

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,435,050	+				-0.5
5,435,051	-				-2.5
5,435,051	-				+1.5
5,435,051	-				+1.3
5,435,095	+				+0.6
5,435,095	+				+0.0
5,435,095	+				+1.3
5,435,095	+				-0.4
5,435,095	+				+0.1
5,435,096	-				+0.7
5,435,096	-				-0.1
5,435,096	-				+1.0
5,435,096	-				-0.1
5,435,096	-				+0.7
5,435,096	-				-2.2
5,435,096	-				+1.3
5,435,232	+		Psyr_4571	0.18	+0.5
5,435,232	+		Psyr_4571	0.18	+1.2
5,435,232	+		Psyr_4571	0.18	-0.4
5,435,233	-		Psyr_4571	0.18	-1.2
5,435,289	-		Psyr_4571	0.24	-1.8
5,435,289	-		Psyr_4571	0.24	-0.2
5,435,376	+		Psyr_4571	0.33	-0.3
5,435,515	+		Psyr_4571	0.49	-0.8
5,435,515	+		Psyr_4571	0.49	+0.5
5,435,515	+		Psyr_4571	0.49	+0.4
5,435,516	-		Psyr_4571	0.49	-0.2
5,435,516	-		Psyr_4571	0.49	-0.2
5,435,516	-		Psyr_4571	0.49	-2.1
5,435,599	+		Psyr_4571	0.58	+0.6
5,435,599	+		Psyr_4571	0.58	-0.9
5,435,599	+		Psyr_4571	0.58	+2.2
5,435,599	+		Psyr_4571	0.58	-1.3
5,435,600	-		Psyr_4571	0.58	-0.5
5,435,600	-		Psyr_4571	0.58	+0.7
5,435,600	-		Psyr_4571	0.58	-0.2
5,435,600	-		Psyr_4571	0.58	+1.3
5,435,600	-		Psyr_4571	0.58	+0.9
5,435,883	+		Psyr_4571	0.89	-1.0
5,435,884	-		Psyr_4571	0.89	-0.9
5,435,884	-		Psyr_4571	0.89	+0.7
5,435,956	+				-0.2
5,435,956	+				+0.1
5,435,956	+				+1.5
5,435,956	+				-0.5
5,435,957	-				-1.0
5,435,957	-				+2.0
5,435,957	-				-0.7
5,435,957	-				-0.2
5,435,957	-				+1.2
5,435,957	-				-1.1
5,435,982	+				-0.2
5,435,982	+				+0.3
5,435,982	+				+0.5
5,435,982	+				-0.7
5,435,982	+				-0.5
5,435,983	-				+0.8
5,435,983	-				-0.7
5,435,983	-				+0.3
5,435,983	-				+0.1
5,435,983	-				+1.5
5,435,983	-				+0.6
5,435,983	-				-0.0
5,435,983	-				-0.6
5,435,983	-				+0.9
5,435,983	-				+2.4
5,435,983	-				-0.3
5,435,983	-				+0.9
5,435,983	-				+1.3
5,435,983	-				+0.9
5,435,985	+				-2.6
5,435,985	+				-1.8
5,435,985	+				+1.2
5,435,985	+				-1.5
5,435,985	+				-0.3
5,435,986	-				-0.7
5,435,986	-				+0.0
5,435,986	-				+2.5
5,435,986	-				+0.4
5,435,986	-				-0.0
5,435,986	-				-0.1
5,435,986	-				-0.1
5,436,082	-				+0.7
5,436,441	+		Psyr_4572	0.51	+0.2
5,436,494	+		Psyr_4572	0.58	+0.5
5,436,494	+		Psyr_4572	0.58	-0.1
5,436,494	+		Psyr_4572	0.58	+1.9
5,436,494	+		Psyr_4572	0.58	-0.8
5,436,494	+		Psyr_4572	0.58	+1.3
5,436,494	+		Psyr_4572	0.58	-0.7
5,436,495	-		Psyr_4572	0.58	+0.0
5,436,495	-		Psyr_4572	0.58	+1.6
5,436,495	-		Psyr_4572	0.58	+0.7
5,436,495	-		Psyr_4572	0.58	-0.5
5,436,495	-		Psyr_4572	0.58	+0.5
5,436,495	-		Psyr_4572	0.58	-0.6
5,436,495	-		Psyr_4572	0.58	+2.1
5,436,495	-		Psyr_4572	0.58	+1.7
5,436,495	-		Psyr_4572	0.58	-0.9
5,436,495	-		Psyr_4572	0.58	+1.1
5,436,495	-		Psyr_4572	0.58	+2.2
5,436,495	-		Psyr_4572	0.58	-0.4
5,436,495	-		Psyr_4572	0.58	-0.1
5,436,497	+		Psyr_4572	0.59	-1.1
5,436,497	+		Psyr_4572	0.59	+0.4
5,436,497	+		Psyr_4572	0.59	+1.4
5,436,498	-		Psyr_4572	0.59	+0.7
5,436,498	-		Psyr_4572	0.59	-1.1
5,436,498	-		Psyr_4572	0.59	+0.9
5,436,498	-		Psyr_4572	0.59	+0.3
5,436,512	+		Psyr_4572	0.61	+0.4
5,436,512	+		Psyr_4572	0.61	-2.5
5,436,512	+		Psyr_4572	0.61	-1.3
5,436,512	+		Psyr_4572	0.61	+0.4
5,436,512	+		Psyr_4572	0.61	-0.6
5,436,513	-		Psyr_4572	0.61	-0.4
5,436,513	-		Psyr_4572	0.61	-1.2
5,436,513	-		Psyr_4572	0.61	+1.0
5,436,513	-		Psyr_4572	0.61	-0.2
5,436,513	-		Psyr_4572	0.61	+1.6
5,436,513	-		Psyr_4572	0.61	-0.7
5,436,671	+		Psyr_4572	0.81	-0.5
5,436,671	+		Psyr_4572	0.81	-0.8
5,436,671	+		Psyr_4572	0.81	-0.3
5,436,671	+		Psyr_4572	0.81	+0.7
5,436,671	+		Psyr_4572	0.81	+3.0
5,436,672	-		Psyr_4572	0.81	+0.2
5,436,672	-		Psyr_4572	0.81	+0.1
5,436,672	-		Psyr_4572	0.81	+1.2
5,436,672	-		Psyr_4572	0.81	+0.8
5,436,672	-		Psyr_4572	0.81	+0.4
5,436,672	-		Psyr_4572	0.81	-1.6
5,436,672	-		Psyr_4572	0.81	-0.2
5,436,674	-		Psyr_4572	0.81	+0.5
5,436,789	-				+1.4
5,436,803	+				-0.2
5,436,804	-				-1.2
5,436,804	-				-1.3
5,436,853	+				-0.7
5,436,854	-				+0.9
5,436,854	-				+0.7
5,436,854	-				-0.1
5,436,936	-				+1.5
5,436,975	+		Psyr_4573	0.16	-0.7
5,436,975	+		Psyr_4573	0.16	+0.7
5,436,975	+		Psyr_4573	0.16	+0.1
5,436,975	+		Psyr_4573	0.16	+1.2
5,436,975	+		Psyr_4573	0.16	+1.3
5,436,975	+		Psyr_4573	0.16	-0.7
5,436,975	+		Psyr_4573	0.16	+0.5
5,436,975	+		Psyr_4573	0.16	+0.2
5,436,975	+		Psyr_4573	0.16	+0.5
5,436,975	+		Psyr_4573	0.16	-2.5
5,436,975	+		Psyr_4573	0.16	+0.5
5,436,976	-		Psyr_4573	0.16	-0.5
5,436,976	-		Psyr_4573	0.16	+0.6
5,436,976	-		Psyr_4573	0.16	+0.2
5,436,976	-		Psyr_4573	0.16	-0.8
5,436,976	-		Psyr_4573	0.16	+1.5
5,436,976	-		Psyr_4573	0.16	+1.5
5,436,976	-		Psyr_4573	0.16	+0.0
5,436,976	-		Psyr_4573	0.16	-1.1
5,436,976	-		Psyr_4573	0.16	+1.1
5,436,976	-		Psyr_4573	0.16	+0.2
5,437,106	+		Psyr_4573	0.55	+1.7
5,437,106	+		Psyr_4573	0.55	+0.4
5,437,106	+		Psyr_4573	0.55	+0.9
5,437,106	+		Psyr_4573	0.55	+2.0
5,437,106	+		Psyr_4573	0.55	-1.2
5,437,106	+		Psyr_4573	0.55	-0.1
5,437,106	+		Psyr_4573	0.55	+0.6
5,437,106	+		Psyr_4573	0.55	-1.0
5,437,106	+		Psyr_4573	0.55	+0.8
5,437,106	+		Psyr_4573	0.55	-0.6
5,437,106	+		Psyr_4573	0.55	+0.3
5,437,106	+		Psyr_4573	0.55	+3.1
5,437,106	+		Psyr_4573	0.55	+1.0
5,437,106	+		Psyr_4573	0.55	+0.5
5,437,106	+		Psyr_4573	0.55	-1.2
5,437,106	+		Psyr_4573	0.55	-0.7
5,437,107	-		Psyr_4573	0.55	+0.4
5,437,107	-		Psyr_4573	0.55	-0.8
5,437,107	-		Psyr_4573	0.55	+0.2
5,437,107	-		Psyr_4573	0.55	-0.7
5,437,107	-		Psyr_4573	0.55	+0.3
5,437,107	-		Psyr_4573	0.55	+0.5
5,437,222	+		Psyr_4573	0.89	-0.4
5,437,222	+		Psyr_4573	0.89	-0.9
5,437,222	+		Psyr_4573	0.89	-0.5
5,437,222	+		Psyr_4573	0.89	-0.9
5,437,222	+		Psyr_4573	0.89	-0.6
5,437,222	+		Psyr_4573	0.89	-1.2
5,437,222	+		Psyr_4573	0.89	-0.1
5,437,222	+		Psyr_4573	0.89	-0.5
5,437,223	-		Psyr_4573	0.89	+0.3
5,437,223	-		Psyr_4573	0.89	+1.5
5,437,223	-		Psyr_4573	0.89	+2.3
5,437,223	-		Psyr_4573	0.89	-0.2
5,437,223	-		Psyr_4573	0.89	-2.2
5,437,223	-		Psyr_4573	0.89	-0.8
5,437,223	-		Psyr_4573	0.89	+1.5
5,437,223	-		Psyr_4573	0.89	+1.2