Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4514 and Psyr_4515 are separated by 133 nucleotides Psyr_4515 and Psyr_4516 are separated by 411 nucleotides Psyr_4516 and Psyr_4517 overlap by 97 nucleotides
Psyr_4514: Psyr_4514 - conserved hypothetical protein, at 5,377,780 to 5,378,865
_4514
Psyr_4515: Psyr_4515 - hypothetical protein, at 5,378,999 to 5,380,201
_4515
Psyr_4516: Psyr_4516 - hypothetical protein, at 5,380,613 to 5,381,140
_4516
Psyr_4517: Psyr_4517 - SEC-C motif protein, at 5,381,044 to 5,382,201
_4517
Position (kb) 5378
5379
5380
5381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5378.013 kb on - strand, within Psyr_4514 at 5378.016 kb on + strand, within Psyr_4514 at 5378.092 kb on + strand, within Psyr_4514 at 5378.108 kb on + strand, within Psyr_4514 at 5378.118 kb on - strand, within Psyr_4514 at 5378.194 kb on - strand, within Psyr_4514 at 5378.314 kb on - strand, within Psyr_4514 at 5378.385 kb on - strand, within Psyr_4514 at 5378.416 kb on + strand, within Psyr_4514 at 5378.417 kb on - strand, within Psyr_4514 at 5378.417 kb on - strand, within Psyr_4514 at 5378.447 kb on + strand, within Psyr_4514 at 5378.457 kb on + strand at 5378.458 kb on - strand, within Psyr_4514 at 5378.458 kb on - strand, within Psyr_4514 at 5378.458 kb on - strand, within Psyr_4514 at 5378.458 kb on - strand, within Psyr_4514 at 5378.533 kb on + strand, within Psyr_4514 at 5378.534 kb on - strand, within Psyr_4514 at 5378.534 kb on - strand, within Psyr_4514 at 5378.536 kb on + strand, within Psyr_4514 at 5378.536 kb on + strand, within Psyr_4514 at 5378.537 kb on - strand, within Psyr_4514 at 5378.537 kb on - strand, within Psyr_4514 at 5378.537 kb on - strand, within Psyr_4514 at 5378.571 kb on + strand, within Psyr_4514 at 5378.572 kb on - strand, within Psyr_4514 at 5378.616 kb on - strand, within Psyr_4514 at 5378.657 kb on - strand, within Psyr_4514 at 5378.720 kb on + strand, within Psyr_4514 at 5378.743 kb on + strand, within Psyr_4514 at 5378.746 kb on + strand, within Psyr_4514 at 5378.747 kb on - strand, within Psyr_4514 at 5378.847 kb on + strand at 5378.866 kb on - strand at 5378.870 kb on - strand at 5378.922 kb on + strand at 5378.922 kb on + strand at 5378.993 kb on + strand at 5378.993 kb on + strand at 5378.994 kb on - strand at 5378.995 kb on + strand at 5379.166 kb on + strand, within Psyr_4515 at 5379.191 kb on - strand, within Psyr_4515 at 5379.217 kb on + strand, within Psyr_4515 at 5379.312 kb on - strand, within Psyr_4515 at 5379.319 kb on + strand, within Psyr_4515 at 5379.320 kb on - strand, within Psyr_4515 at 5379.320 kb on - strand, within Psyr_4515 at 5379.336 kb on - strand, within Psyr_4515 at 5379.336 kb on - strand, within Psyr_4515 at 5379.408 kb on - strand, within Psyr_4515 at 5379.537 kb on + strand, within Psyr_4515 at 5379.537 kb on + strand, within Psyr_4515 at 5379.537 kb on + strand, within Psyr_4515 at 5379.538 kb on - strand, within Psyr_4515 at 5379.538 kb on - strand, within Psyr_4515 at 5379.538 kb on - strand, within Psyr_4515 at 5379.538 kb on - strand, within Psyr_4515 at 5379.538 kb on - strand, within Psyr_4515 at 5379.538 kb on - strand, within Psyr_4515 at 5379.540 kb on + strand, within Psyr_4515 at 5379.541 kb on - strand, within Psyr_4515 at 5379.556 kb on + strand, within Psyr_4515 at 5379.556 kb on + strand, within Psyr_4515 at 5379.576 kb on - strand, within Psyr_4515 at 5379.576 kb on - strand, within Psyr_4515 at 5379.578 kb on + strand, within Psyr_4515 at 5379.579 kb on - strand, within Psyr_4515 at 5379.632 kb on + strand, within Psyr_4515 at 5379.644 kb on + strand, within Psyr_4515 at 5379.733 kb on + strand, within Psyr_4515 at 5379.734 kb on - strand, within Psyr_4515 at 5379.734 kb on - strand, within Psyr_4515 at 5379.737 kb on + strand, within Psyr_4515 at 5379.737 kb on + strand, within Psyr_4515 at 5379.738 kb on - strand, within Psyr_4515 at 5379.738 kb on - strand, within Psyr_4515 at 5379.758 kb on + strand, within Psyr_4515 at 5379.758 kb on + strand, within Psyr_4515 at 5379.758 kb on + strand, within Psyr_4515 at 5379.758 kb on + strand, within Psyr_4515 at 5379.758 kb on + strand, within Psyr_4515 at 5379.758 kb on + strand, within Psyr_4515 at 5379.759 kb on - strand, within Psyr_4515 at 5379.759 kb on - strand, within Psyr_4515 at 5379.759 kb on - strand at 5379.766 kb on + strand, within Psyr_4515 at 5379.949 kb on - strand, within Psyr_4515 at 5379.949 kb on - strand, within Psyr_4515 at 5379.949 kb on - strand, within Psyr_4515 at 5380.001 kb on + strand, within Psyr_4515 at 5380.001 kb on + strand, within Psyr_4515 at 5380.001 kb on + strand, within Psyr_4515 at 5380.001 kb on + strand, within Psyr_4515 at 5380.001 kb on + strand, within Psyr_4515 at 5380.001 kb on + strand, within Psyr_4515 at 5380.001 kb on + strand, within Psyr_4515 at 5380.001 kb on + strand, within Psyr_4515 at 5380.001 kb on + strand, within Psyr_4515 at 5380.001 kb on + strand, within Psyr_4515 at 5380.001 kb on + strand, within Psyr_4515 at 5380.002 kb on - strand, within Psyr_4515 at 5380.002 kb on - strand, within Psyr_4515 at 5380.002 kb on - strand, within Psyr_4515 at 5380.002 kb on - strand, within Psyr_4515 at 5380.002 kb on - strand, within Psyr_4515 at 5380.002 kb on - strand, within Psyr_4515 at 5380.002 kb on - strand, within Psyr_4515 at 5380.002 kb on - strand, within Psyr_4515 at 5380.002 kb on - strand, within Psyr_4515 at 5380.002 kb on - strand, within Psyr_4515 at 5380.014 kb on + strand, within Psyr_4515 at 5380.015 kb on - strand, within Psyr_4515 at 5380.015 kb on - strand, within Psyr_4515 at 5380.015 kb on - strand, within Psyr_4515 at 5380.015 kb on - strand, within Psyr_4515 at 5380.015 kb on - strand, within Psyr_4515 at 5380.015 kb on - strand, within Psyr_4515 at 5380.015 kb on - strand, within Psyr_4515 at 5380.015 kb on - strand, within Psyr_4515 at 5380.015 kb on - strand, within Psyr_4515 at 5380.018 kb on + strand, within Psyr_4515 at 5380.018 kb on + strand, within Psyr_4515 at 5380.018 kb on + strand, within Psyr_4515 at 5380.019 kb on - strand, within Psyr_4515 at 5380.019 kb on - strand, within Psyr_4515 at 5380.067 kb on + strand, within Psyr_4515 at 5380.067 kb on + strand, within Psyr_4515 at 5380.067 kb on + strand, within Psyr_4515 at 5380.067 kb on + strand, within Psyr_4515 at 5380.098 kb on - strand at 5380.098 kb on - strand at 5380.184 kb on + strand at 5380.185 kb on - strand at 5380.185 kb on - strand at 5380.185 kb on - strand at 5380.222 kb on + strand at 5380.223 kb on - strand at 5380.225 kb on - strand at 5380.268 kb on + strand at 5380.268 kb on + strand at 5380.268 kb on + strand at 5380.268 kb on + strand at 5380.268 kb on + strand at 5380.268 kb on + strand at 5380.268 kb on + strand at 5380.268 kb on + strand at 5380.269 kb on - strand at 5380.269 kb on - strand at 5380.269 kb on - strand at 5380.269 kb on - strand at 5380.269 kb on - strand at 5380.269 kb on - strand at 5380.517 kb on + strand at 5380.521 kb on + strand at 5380.522 kb on - strand at 5380.522 kb on - strand at 5380.627 kb on + strand at 5380.627 kb on + strand at 5380.628 kb on - strand at 5380.687 kb on + strand, within Psyr_4516 at 5380.688 kb on - strand, within Psyr_4516 at 5380.688 kb on - strand, within Psyr_4516 at 5380.688 kb on - strand, within Psyr_4516 at 5380.688 kb on - strand, within Psyr_4516 at 5380.722 kb on + strand, within Psyr_4516 at 5380.723 kb on - strand, within Psyr_4516 at 5380.731 kb on + strand, within Psyr_4516 at 5380.731 kb on + strand, within Psyr_4516 at 5380.731 kb on + strand, within Psyr_4516 at 5380.732 kb on - strand, within Psyr_4516 at 5380.739 kb on + strand, within Psyr_4516 at 5380.739 kb on + strand, within Psyr_4516 at 5380.740 kb on - strand, within Psyr_4516 at 5380.740 kb on - strand, within Psyr_4516 at 5380.740 kb on - strand, within Psyr_4516 at 5380.740 kb on - strand, within Psyr_4516 at 5380.740 kb on - strand, within Psyr_4516 at 5380.828 kb on + strand, within Psyr_4516 at 5380.828 kb on + strand, within Psyr_4516 at 5380.828 kb on + strand, within Psyr_4516 at 5380.828 kb on + strand, within Psyr_4516 at 5380.828 kb on + strand, within Psyr_4516 at 5380.828 kb on + strand, within Psyr_4516 at 5380.828 kb on + strand, within Psyr_4516 at 5380.828 kb on + strand, within Psyr_4516 at 5380.828 kb on + strand, within Psyr_4516 at 5380.829 kb on - strand, within Psyr_4516 at 5380.829 kb on - strand, within Psyr_4516 at 5380.829 kb on - strand, within Psyr_4516 at 5380.829 kb on - strand, within Psyr_4516 at 5380.829 kb on - strand, within Psyr_4516 at 5380.829 kb on - strand, within Psyr_4516 at 5380.829 kb on - strand, within Psyr_4516 at 5380.829 kb on - strand, within Psyr_4516 at 5380.829 kb on - strand, within Psyr_4516 at 5380.877 kb on + strand, within Psyr_4516 at 5380.877 kb on + strand, within Psyr_4516 at 5380.877 kb on + strand, within Psyr_4516 at 5380.878 kb on - strand, within Psyr_4516 at 5380.878 kb on - strand, within Psyr_4516 at 5380.878 kb on - strand, within Psyr_4516 at 5380.878 kb on - strand, within Psyr_4516 at 5380.878 kb on - strand, within Psyr_4516 at 5381.023 kb on + strand, within Psyr_4516 at 5381.045 kb on + strand at 5381.046 kb on - strand at 5381.046 kb on - strand at 5381.046 kb on - strand at 5381.046 kb on - strand at 5381.100 kb on + strand at 5381.194 kb on - strand, within Psyr_4517
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 5,378,013 - Psyr_4514 0.21 -1.6 5,378,016 + Psyr_4514 0.22 +0.1 5,378,092 + Psyr_4514 0.29 -1.8 5,378,108 + Psyr_4514 0.30 +0.4 5,378,118 - Psyr_4514 0.31 +1.3 5,378,194 - Psyr_4514 0.38 -2.3 5,378,314 - Psyr_4514 0.49 +1.5 5,378,385 - Psyr_4514 0.56 -0.9 5,378,416 + Psyr_4514 0.59 -0.2 5,378,417 - Psyr_4514 0.59 +0.0 5,378,417 - Psyr_4514 0.59 +0.1 5,378,447 + Psyr_4514 0.61 +2.2 5,378,457 + -0.1 5,378,458 - Psyr_4514 0.62 -1.0 5,378,458 - Psyr_4514 0.62 -0.2 5,378,458 - Psyr_4514 0.62 +0.4 5,378,458 - Psyr_4514 0.62 -0.4 5,378,533 + Psyr_4514 0.69 +0.9 5,378,534 - Psyr_4514 0.69 +1.7 5,378,534 - Psyr_4514 0.69 +2.1 5,378,536 + Psyr_4514 0.70 -1.0 5,378,536 + Psyr_4514 0.70 -1.8 5,378,537 - Psyr_4514 0.70 -0.5 5,378,537 - Psyr_4514 0.70 +1.5 5,378,537 - Psyr_4514 0.70 -1.1 5,378,571 + Psyr_4514 0.73 -0.5 5,378,572 - Psyr_4514 0.73 -1.4 5,378,616 - Psyr_4514 0.77 -1.5 5,378,657 - Psyr_4514 0.81 +1.0 5,378,720 + Psyr_4514 0.87 +0.2 5,378,743 + Psyr_4514 0.89 +0.0 5,378,746 + Psyr_4514 0.89 -2.5 5,378,747 - Psyr_4514 0.89 +0.6 5,378,847 + +1.3 5,378,866 - +1.6 5,378,870 - -0.0 5,378,922 + +0.0 5,378,922 + -1.5 5,378,993 + -0.3 5,378,993 + -0.3 5,378,994 - +1.5 5,378,995 + +2.1 5,379,166 + Psyr_4515 0.14 +1.3 5,379,191 - Psyr_4515 0.16 -0.6 5,379,217 + Psyr_4515 0.18 -0.5 5,379,312 - Psyr_4515 0.26 +3.1 5,379,319 + Psyr_4515 0.27 +2.0 5,379,320 - Psyr_4515 0.27 +0.7 5,379,320 - Psyr_4515 0.27 -0.4 5,379,336 - Psyr_4515 0.28 +1.1 5,379,336 - Psyr_4515 0.28 -0.0 5,379,408 - Psyr_4515 0.34 -0.2 5,379,537 + Psyr_4515 0.45 +0.4 5,379,537 + Psyr_4515 0.45 +0.9 5,379,537 + Psyr_4515 0.45 -1.5 5,379,538 - Psyr_4515 0.45 +1.9 5,379,538 - Psyr_4515 0.45 -0.6 5,379,538 - Psyr_4515 0.45 -0.4 5,379,538 - Psyr_4515 0.45 +3.7 5,379,538 - Psyr_4515 0.45 +1.8 5,379,538 - Psyr_4515 0.45 -0.6 5,379,540 + Psyr_4515 0.45 +0.2 5,379,541 - Psyr_4515 0.45 +1.4 5,379,556 + Psyr_4515 0.46 +0.6 5,379,556 + Psyr_4515 0.46 +0.9 5,379,576 - Psyr_4515 0.48 +1.5 5,379,576 - Psyr_4515 0.48 +0.7 5,379,578 + Psyr_4515 0.48 -0.3 5,379,579 - Psyr_4515 0.48 -0.4 5,379,632 + Psyr_4515 0.53 +0.9 5,379,644 + Psyr_4515 0.54 +0.1 5,379,733 + Psyr_4515 0.61 +0.2 5,379,734 - Psyr_4515 0.61 -0.5 5,379,734 - Psyr_4515 0.61 -0.1 5,379,737 + Psyr_4515 0.61 +0.5 5,379,737 + Psyr_4515 0.61 +0.3 5,379,738 - Psyr_4515 0.61 -0.5 5,379,738 - Psyr_4515 0.61 +1.1 5,379,758 + Psyr_4515 0.63 +0.3 5,379,758 + Psyr_4515 0.63 +1.5 5,379,758 + Psyr_4515 0.63 +1.1 5,379,758 + Psyr_4515 0.63 -0.3 5,379,758 + Psyr_4515 0.63 +1.5 5,379,758 + Psyr_4515 0.63 -2.9 5,379,759 - Psyr_4515 0.63 -2.3 5,379,759 - Psyr_4515 0.63 -0.6 5,379,759 - +1.5 5,379,766 + Psyr_4515 0.64 -0.2 5,379,949 - Psyr_4515 0.79 -0.8 5,379,949 - Psyr_4515 0.79 +0.6 5,379,949 - Psyr_4515 0.79 -1.8 5,380,001 + Psyr_4515 0.83 +0.1 5,380,001 + Psyr_4515 0.83 -0.1 5,380,001 + Psyr_4515 0.83 +1.4 5,380,001 + Psyr_4515 0.83 +0.9 5,380,001 + Psyr_4515 0.83 +0.7 5,380,001 + Psyr_4515 0.83 +0.7 5,380,001 + Psyr_4515 0.83 -2.2 5,380,001 + Psyr_4515 0.83 -2.0 5,380,001 + Psyr_4515 0.83 +0.2 5,380,001 + Psyr_4515 0.83 -1.0 5,380,001 + Psyr_4515 0.83 +0.1 5,380,002 - Psyr_4515 0.83 +1.5 5,380,002 - Psyr_4515 0.83 -0.6 5,380,002 - Psyr_4515 0.83 -0.7 5,380,002 - Psyr_4515 0.83 +0.6 5,380,002 - Psyr_4515 0.83 +1.1 5,380,002 - Psyr_4515 0.83 -0.5 5,380,002 - Psyr_4515 0.83 +0.4 5,380,002 - Psyr_4515 0.83 -1.1 5,380,002 - Psyr_4515 0.83 +0.3 5,380,002 - Psyr_4515 0.83 -1.7 5,380,014 + Psyr_4515 0.84 -0.7 5,380,015 - Psyr_4515 0.84 -0.7 5,380,015 - Psyr_4515 0.84 +0.3 5,380,015 - Psyr_4515 0.84 +0.3 5,380,015 - Psyr_4515 0.84 -0.2 5,380,015 - Psyr_4515 0.84 -2.8 5,380,015 - Psyr_4515 0.84 -1.2 5,380,015 - Psyr_4515 0.84 -0.5 5,380,015 - Psyr_4515 0.84 +1.4 5,380,015 - Psyr_4515 0.84 +0.9 5,380,018 + Psyr_4515 0.85 +1.9 5,380,018 + Psyr_4515 0.85 +0.7 5,380,018 + Psyr_4515 0.85 -0.3 5,380,019 - Psyr_4515 0.85 +0.0 5,380,019 - Psyr_4515 0.85 -3.2 5,380,067 + Psyr_4515 0.89 +0.9 5,380,067 + Psyr_4515 0.89 -2.0 5,380,067 + Psyr_4515 0.89 -0.2 5,380,067 + Psyr_4515 0.89 -0.8 5,380,098 - -0.5 5,380,098 - +1.2 5,380,184 + +1.0 5,380,185 - +0.1 5,380,185 - -0.7 5,380,185 - -2.8 5,380,222 + +0.7 5,380,223 - -0.1 5,380,225 - +0.7 5,380,268 + -0.5 5,380,268 + +0.2 5,380,268 + +0.9 5,380,268 + -0.7 5,380,268 + -0.3 5,380,268 + +1.4 5,380,268 + -2.2 5,380,268 + +1.8 5,380,269 - +0.2 5,380,269 - +1.2 5,380,269 - -0.4 5,380,269 - +0.3 5,380,269 - -1.3 5,380,269 - -0.6 5,380,517 + +2.1 5,380,521 + -2.0 5,380,522 - +3.0 5,380,522 - +0.3 5,380,627 + -0.8 5,380,627 + -0.8 5,380,628 - +1.3 5,380,687 + Psyr_4516 0.14 -1.2 5,380,688 - Psyr_4516 0.14 -2.4 5,380,688 - Psyr_4516 0.14 -1.0 5,380,688 - Psyr_4516 0.14 -0.3 5,380,688 - Psyr_4516 0.14 +1.7 5,380,722 + Psyr_4516 0.21 -0.9 5,380,723 - Psyr_4516 0.21 -1.5 5,380,731 + Psyr_4516 0.22 -0.4 5,380,731 + Psyr_4516 0.22 +1.6 5,380,731 + Psyr_4516 0.22 +0.6 5,380,732 - Psyr_4516 0.23 +1.5 5,380,739 + Psyr_4516 0.24 +0.4 5,380,739 + Psyr_4516 0.24 +0.0 5,380,740 - Psyr_4516 0.24 -1.7 5,380,740 - Psyr_4516 0.24 -2.4 5,380,740 - Psyr_4516 0.24 +1.4 5,380,740 - Psyr_4516 0.24 +0.6 5,380,740 - Psyr_4516 0.24 -0.7 5,380,828 + Psyr_4516 0.41 -0.6 5,380,828 + Psyr_4516 0.41 +0.8 5,380,828 + Psyr_4516 0.41 -1.4 5,380,828 + Psyr_4516 0.41 -0.2 5,380,828 + Psyr_4516 0.41 -1.0 5,380,828 + Psyr_4516 0.41 +0.4 5,380,828 + Psyr_4516 0.41 +1.0 5,380,828 + Psyr_4516 0.41 -2.2 5,380,828 + Psyr_4516 0.41 +0.6 5,380,829 - Psyr_4516 0.41 +1.7 5,380,829 - Psyr_4516 0.41 +1.0 5,380,829 - Psyr_4516 0.41 +0.3 5,380,829 - Psyr_4516 0.41 +1.5 5,380,829 - Psyr_4516 0.41 +0.9 5,380,829 - Psyr_4516 0.41 -1.7 5,380,829 - Psyr_4516 0.41 +2.4 5,380,829 - Psyr_4516 0.41 -1.1 5,380,829 - Psyr_4516 0.41 -0.0 5,380,877 + Psyr_4516 0.50 +0.7 5,380,877 + Psyr_4516 0.50 +0.4 5,380,877 + Psyr_4516 0.50 +1.7 5,380,878 - Psyr_4516 0.50 +1.2 5,380,878 - Psyr_4516 0.50 -2.7 5,380,878 - Psyr_4516 0.50 -0.2 5,380,878 - Psyr_4516 0.50 +0.7 5,380,878 - Psyr_4516 0.50 -0.4 5,381,023 + Psyr_4516 0.78 +0.2 5,381,045 + +0.4 5,381,046 - +1.1 5,381,046 - +0.9 5,381,046 - +0.7 5,381,046 - -1.9 5,381,100 + +1.0 5,381,194 - Psyr_4517 0.13 -2.6
Or see this region's nucleotide sequence