Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4502

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,365,195	+		Psyr_4501	0.31	-1.2
5,365,234	+		Psyr_4501	0.35	-0.2
5,365,234	+		Psyr_4501	0.35	-2.9
5,365,234	+		Psyr_4501	0.35	+0.7
5,365,234	+		Psyr_4501	0.35	-0.4
5,365,235	-		Psyr_4501	0.35	-1.1
5,365,273	+		Psyr_4501	0.38	-1.1
5,365,273	+		Psyr_4501	0.38	-0.6
5,365,274	-		Psyr_4501	0.38	+0.1
5,365,274	-		Psyr_4501	0.38	-0.7
5,365,274	-		Psyr_4501	0.38	+0.7
5,365,274	-		Psyr_4501	0.38	-0.8
5,365,274	-		Psyr_4501	0.38	+1.1
5,365,327	+		Psyr_4501	0.43	-1.1
5,365,327	+		Psyr_4501	0.43	+0.1
5,365,328	-		Psyr_4501	0.43	+0.5
5,365,328	-		Psyr_4501	0.43	-1.2
5,365,328	-		Psyr_4501	0.43	+1.3
5,365,328	-		Psyr_4501	0.43	-0.4
5,365,328	-		Psyr_4501	0.43	-0.7
5,365,328	-		Psyr_4501	0.43	+1.5
5,365,328	-		Psyr_4501	0.43	+0.2
5,365,328	-		Psyr_4501	0.43	-0.1
5,365,704	+		Psyr_4501	0.76	+2.2
5,365,717	+		Psyr_4501	0.77	+0.4
5,365,717	+		Psyr_4501	0.77	-2.4
5,365,717	+		Psyr_4501	0.77	+1.2
5,365,718	-		Psyr_4501	0.77	-0.6
5,365,718	-		Psyr_4501	0.77	+0.4
5,365,718	-		Psyr_4501	0.77	-0.3
5,365,718	-		Psyr_4501	0.77	+0.8
5,365,718	-		Psyr_4501	0.77	+0.5
5,365,718	-		Psyr_4501	0.77	-0.1
5,365,718	-		Psyr_4501	0.77	+0.4
5,365,718	-		Psyr_4501	0.77	+0.4
5,365,718	-		Psyr_4501	0.77	+0.1
5,365,718	-		Psyr_4501	0.77	+1.7
5,365,869	-				+1.5
5,365,997	+				+0.0
5,365,997	+				+0.1
5,365,998	-				-0.1
5,366,063	+				+3.2
5,366,088	+				-0.5
5,366,089	-				-0.7
5,366,092	-				-0.1
5,366,107	+				+2.5
5,366,153	-				-1.3
5,366,226	-				+1.0
5,366,330	+		Psyr_4502	0.15	+1.6
5,366,331	-		Psyr_4502	0.15	-1.0
5,366,331	-		Psyr_4502	0.15	+0.9
5,366,331	-		Psyr_4502	0.15	-1.1
5,366,331	-		Psyr_4502	0.15	+0.0
5,366,399	+		Psyr_4502	0.20	+1.5
5,366,400	-		Psyr_4502	0.20	-0.5
5,366,492	-		Psyr_4502	0.27	-0.7
5,366,516	+		Psyr_4502	0.29	+0.4
5,366,520	-		Psyr_4502	0.29	-0.9
5,366,579	+		Psyr_4502	0.33	-0.0
5,366,579	+		Psyr_4502	0.33	-0.4
5,366,579	+		Psyr_4502	0.33	+2.3
5,366,580	-		Psyr_4502	0.33	-2.8
5,366,580	-		Psyr_4502	0.33	+1.5
5,366,581	+		Psyr_4502	0.34	-0.2
5,366,581	+		Psyr_4502	0.34	-1.8
5,366,581	+		Psyr_4502	0.34	-1.5
5,366,581	+		Psyr_4502	0.34	-0.3
5,366,581	+		Psyr_4502	0.34	-1.3
5,366,582	-		Psyr_4502	0.34	+2.5
5,366,582	-		Psyr_4502	0.34	-0.0
5,366,582	-		Psyr_4502	0.34	+0.1
5,366,582	-		Psyr_4502	0.34	+0.2
5,366,582	-		Psyr_4502	0.34	+1.0
5,366,582	-		Psyr_4502	0.34	-0.6
5,366,582	-		Psyr_4502	0.34	+0.5
5,366,952	+		Psyr_4502	0.62	+1.2
5,366,952	+		Psyr_4502	0.62	-0.5
5,366,952	+		Psyr_4502	0.62	-0.4
5,366,952	+		Psyr_4502	0.62	-0.3
5,366,952	+		Psyr_4502	0.62	-1.5
5,366,952	+		Psyr_4502	0.62	-0.8
5,366,953	-		Psyr_4502	0.62	-0.2
5,366,953	-		Psyr_4502	0.62	-0.3
5,366,953	-		Psyr_4502	0.62	-0.2
5,366,953	-		Psyr_4502	0.62	-1.4
5,366,953	-		Psyr_4502	0.62	-0.7
5,366,996	-		Psyr_4502	0.65	-0.2
5,366,999	+		Psyr_4502	0.65	-0.8
5,367,132	+		Psyr_4502	0.75	+0.8
5,367,132	+		Psyr_4502	0.75	-0.8
5,367,133	-		Psyr_4502	0.75	+0.0
5,367,133	-		Psyr_4502	0.75	-0.3
5,367,539	-				-2.1
5,367,625	+		Psyr_4503	0.19	+1.2
5,367,625	+		Psyr_4503	0.19	+1.4
5,367,625	+		Psyr_4503	0.19	-1.2
5,367,626	-		Psyr_4503	0.19	-2.3
5,367,626	-		Psyr_4503	0.19	-1.3
5,367,626	-		Psyr_4503	0.19	-0.5
5,367,626	-		Psyr_4503	0.19	+0.5
5,367,902	-		Psyr_4503	0.50	+0.8
5,367,944	-		Psyr_4503	0.55	+1.4
5,368,012	+		Psyr_4503	0.62	+0.9
5,368,067	+		Psyr_4503	0.69	-0.5
5,368,067	+		Psyr_4503	0.69	+0.3
5,368,067	+		Psyr_4503	0.69	-0.8
5,368,067	+		Psyr_4503	0.69	+2.0
5,368,067	+		Psyr_4503	0.69	+0.8
5,368,067	+		Psyr_4503	0.69	+2.7
5,368,067	+		Psyr_4503	0.69	-0.3
5,368,067	+		Psyr_4503	0.69	+1.7
5,368,067	+		Psyr_4503	0.69	-1.2
5,368,067	+		Psyr_4503	0.69	-0.2
5,368,067	+		Psyr_4503	0.69	+0.7
5,368,067	+		Psyr_4503	0.69	+0.3
5,368,068	-		Psyr_4503	0.69	+1.0
5,368,068	-		Psyr_4503	0.69	+0.5
5,368,068	-		Psyr_4503	0.69	-0.1
5,368,068	-		Psyr_4503	0.69	-0.6
5,368,068	-		Psyr_4503	0.69	-1.0
5,368,068	-		Psyr_4503	0.69	+1.5
5,368,068	-		Psyr_4503	0.69	-1.5
5,368,068	-		Psyr_4503	0.69	+0.5
5,368,068	-		Psyr_4503	0.69	+0.7
5,368,090	+		Psyr_4503	0.71	+1.5
5,368,090	+		Psyr_4503	0.71	+0.8
5,368,091	-		Psyr_4503	0.71	+1.7
5,368,091	-		Psyr_4503	0.71	-2.0
5,368,183	-		Psyr_4503	0.82	-0.1
5,368,185	+		Psyr_4503	0.82	+1.0
5,368,185	+		Psyr_4503	0.82	-0.8
5,368,185	+		Psyr_4503	0.82	-0.6
5,368,185	+		Psyr_4503	0.82	-0.8
5,368,186	-		Psyr_4503	0.82	+0.3
5,368,186	-		Psyr_4503	0.82	-2.1
5,368,186	-		Psyr_4503	0.82	+0.0
5,368,201	+		Psyr_4503	0.84	-0.5
5,368,201	+		Psyr_4503	0.84	-1.1
5,368,202	-		Psyr_4503	0.84	+0.8
5,368,210	+		Psyr_4503	0.85	+0.6
5,368,211	-		Psyr_4503	0.85	+1.7
5,368,211	-		Psyr_4503	0.85	-1.1
5,368,211	-		Psyr_4503	0.85	+0.2
5,368,211	-		Psyr_4503	0.85	-0.9
5,368,380	+				-1.1
5,368,380	+				-0.0
5,368,425	+				+0.1
5,368,425	+				+0.2
5,368,425	+				+0.4
5,368,425	+				+0.5
5,368,425	+				+3.5
5,368,425	+				-0.1
5,368,425	+				-2.4
5,368,425	+				+0.7
5,368,425	+				+0.8
5,368,426	-				+1.2
5,368,426	-				-0.8
5,368,426	-				+0.1
5,368,426	-				-0.3
5,368,426	-				-0.2
5,368,426	-				-1.7
5,368,426	-				-1.3
5,368,426	-				+3.8
5,368,426	-				+0.8
5,368,426	-				+0.7
5,368,429	+				+0.7
5,368,429	+				+1.5
5,368,429	+				-0.2