Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4499

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,360,471	+		Psyr_4497	0.50	+1.0
5,360,471	+		Psyr_4497	0.50	-1.6
5,360,471	+		Psyr_4497	0.50	-1.5
5,360,472	-		Psyr_4497	0.50	+0.5
5,360,472	-		Psyr_4497	0.50	+1.0
5,360,472	-		Psyr_4497	0.50	+0.3
5,360,551	+		Psyr_4497	0.61	+1.0
5,360,551	+		Psyr_4497	0.61	-0.3
5,360,551	+		Psyr_4497	0.61	-0.1
5,360,551	+		Psyr_4497	0.61	-1.0
5,360,551	+		Psyr_4497	0.61	+0.2
5,360,552	-		Psyr_4497	0.61	+0.5
5,360,552	-		Psyr_4497	0.61	-1.3
5,360,552	-		Psyr_4497	0.61	+0.0
5,360,677	+		Psyr_4497	0.79	+0.2
5,360,678	-		Psyr_4497	0.79	+0.5
5,360,697	+		Psyr_4497	0.81	-0.4
5,360,894	+		Psyr_4498	0.15	-0.1
5,361,171	+		Psyr_4498	0.80	-0.2
5,361,256	-				-0.7
5,361,392	+				-0.5
5,361,392	+				-0.5
5,361,392	+				+0.5
5,361,392	+				-1.5
5,361,392	+				+1.3
5,361,392	+				+0.6
5,361,392	+				-0.2
5,361,392	+				-0.5
5,361,392	+				+0.7
5,361,392	+				+1.4
5,361,392	+				+0.6
5,361,392	+				-1.7
5,361,392	+				-0.2
5,361,392	+				+0.6
5,361,392	+				+0.1
5,361,392	+				-0.1
5,361,393	-				-0.1
5,361,393	-				+0.1
5,361,393	-				+0.1
5,361,393	-				-0.4
5,361,393	-				+1.5
5,361,393	-				+0.4
5,361,393	-				-0.4
5,361,393	-				+0.5
5,361,393	-				+0.4
5,361,393	-				-1.0
5,361,393	-				+1.0
5,361,393	-				-1.3
5,361,393	-				-2.7
5,361,393	-				+1.4
5,361,393	-				-0.5
5,361,393	-				-0.8
5,361,393	-				-1.1
5,361,456	+				+1.7
5,361,456	+				+0.3
5,361,456	+				+1.0
5,361,456	+				-1.5
5,361,457	-				-0.7
5,361,457	-				-0.4
5,361,457	-				-0.5
5,361,457	-				-1.3
5,361,457	-				+0.5
5,361,457	-				+0.2
5,361,478	+				+0.2
5,361,478	+				+0.8
5,361,478	+				-0.2
5,361,478	+				+0.6
5,361,478	+				+1.0
5,361,478	+				+0.5
5,361,478	+				-0.2
5,361,478	+				-0.2
5,361,478	+				+1.0
5,361,478	+				+3.8
5,361,478	+				-1.5
5,361,478	+				-0.7
5,361,478	+				+3.4
5,361,478	+				-1.3
5,361,479	-				-2.1
5,361,479	-				-1.2
5,361,479	-				-3.0
5,361,479	-				-2.6
5,361,479	-				+1.3
5,361,479	-				-0.5
5,361,479	-				+0.2
5,361,479	-				-0.6
5,361,479	-				+1.0
5,361,479	-				-0.1
5,361,479	-				+1.2
5,361,479	-				+0.8
5,361,507	+				-1.8
5,361,606	+		Psyr_4499	0.11	+2.3
5,361,607	-		Psyr_4499	0.11	+0.6
5,361,662	+		Psyr_4499	0.14	-2.3
5,361,662	+		Psyr_4499	0.14	-0.8
5,361,662	+		Psyr_4499	0.14	+1.4
5,361,662	+		Psyr_4499	0.14	+4.4
5,361,662	+		Psyr_4499	0.14	+1.4
5,361,662	+		Psyr_4499	0.14	-0.4
5,361,662	+		Psyr_4499	0.14	-0.7
5,361,662	+		Psyr_4499	0.14	-2.8
5,361,662	+		Psyr_4499	0.14	+0.4
5,361,662	+		Psyr_4499	0.14	+1.1
5,361,662	+		Psyr_4499	0.14	+1.5
5,361,662	+		Psyr_4499	0.14	+0.9
5,361,663	-		Psyr_4499	0.14	-1.0
5,361,663	-		Psyr_4499	0.14	+0.7
5,361,663	-		Psyr_4499	0.14	+5.6
5,361,663	-		Psyr_4499	0.14	-1.5
5,361,663	-		Psyr_4499	0.14	+1.6
5,361,663	-		Psyr_4499	0.14	+2.1
5,361,663	-		Psyr_4499	0.14	+0.6
5,361,663	-		Psyr_4499	0.14	+1.8
5,361,663	-		Psyr_4499	0.14	-0.5
5,361,663	-		Psyr_4499	0.14	+0.8
5,361,663	-		Psyr_4499	0.14	+0.2
5,361,663	-		Psyr_4499	0.14	+0.3
5,361,663	-		Psyr_4499	0.14	-2.0
5,361,695	+		Psyr_4499	0.15	+1.5
5,361,696	-		Psyr_4499	0.15	-0.2
5,361,696	-		Psyr_4499	0.15	-1.7
5,361,832	+		Psyr_4499	0.22	-1.4
5,361,854	+		Psyr_4499	0.23	+0.4
5,361,854	+		Psyr_4499	0.23	+1.1
5,361,854	+		Psyr_4499	0.23	+0.2
5,361,854	+		Psyr_4499	0.23	+0.0
5,361,854	+		Psyr_4499	0.23	+0.3
5,361,854	+		Psyr_4499	0.23	+2.3
5,361,854	+		Psyr_4499	0.23	+0.6
5,361,854	+		Psyr_4499	0.23	-0.4
5,361,855	-		Psyr_4499	0.23	+0.8
5,361,855	-		Psyr_4499	0.23	-3.0
5,361,855	-		Psyr_4499	0.23	+1.3
5,361,855	-		Psyr_4499	0.23	+0.8
5,361,855	-		Psyr_4499	0.23	+0.2
5,361,855	-		Psyr_4499	0.23	-1.0
5,361,855	-		Psyr_4499	0.23	-0.2
5,361,855	-		Psyr_4499	0.23	+0.0
5,361,855	-		Psyr_4499	0.23	-1.0
5,361,887	+		Psyr_4499	0.24	-1.1
5,361,887	+		Psyr_4499	0.24	+0.7
5,361,887	+		Psyr_4499	0.24	+0.9
5,361,887	+		Psyr_4499	0.24	+0.4
5,361,887	+		Psyr_4499	0.24	+1.2
5,361,888	-		Psyr_4499	0.24	-0.3
5,361,888	-		Psyr_4499	0.24	+1.3
5,361,888	-		Psyr_4499	0.24	+2.5
5,361,888	-		Psyr_4499	0.24	+0.7
5,361,888	-		Psyr_4499	0.24	-0.2
5,361,892	-		Psyr_4499	0.25	-1.5
5,361,956	+		Psyr_4499	0.28	-1.1
5,361,956	+		Psyr_4499	0.28	+0.6
5,361,956	+		Psyr_4499	0.28	+0.8
5,361,956	+		Psyr_4499	0.28	+1.7
5,361,956	+		Psyr_4499	0.28	+2.2
5,361,956	+		Psyr_4499	0.28	+1.7
5,361,956	+		Psyr_4499	0.28	+0.8
5,361,957	-		Psyr_4499	0.28	+1.0
5,361,957	-		Psyr_4499	0.28	+0.4
5,361,957	-		Psyr_4499	0.28	+1.6
5,361,957	-		Psyr_4499	0.28	-1.0
5,361,957	-		Psyr_4499	0.28	+1.0
5,361,957	-		Psyr_4499	0.28	-0.8
5,361,957	-		Psyr_4499	0.28	+0.5
5,361,957	-		Psyr_4499	0.28	+0.6
5,361,957	-		Psyr_4499	0.28	-0.7
5,361,957	-		Psyr_4499	0.28	-1.4
5,361,957	-		Psyr_4499	0.28	+0.5
5,361,958	+		Psyr_4499	0.28	+0.2
5,361,959	-		Psyr_4499	0.28	+0.7
5,362,136	+		Psyr_4499	0.36	+0.0
5,362,227	-		Psyr_4499	0.40	-1.4
5,362,227	-		Psyr_4499	0.40	-0.3
5,362,241	+		Psyr_4499	0.41	+2.0
5,362,241	+		Psyr_4499	0.41	-1.7
5,362,242	-		Psyr_4499	0.41	+0.8
5,362,256	+		Psyr_4499	0.42	-0.5
5,362,283	+		Psyr_4499	0.43	+2.4
5,362,283	+		Psyr_4499	0.43	-1.7
5,362,283	+		Psyr_4499	0.43	-0.5
5,362,283	+		Psyr_4499	0.43	-0.8
5,362,283	+		Psyr_4499	0.43	+1.0
5,362,283	+		Psyr_4499	0.43	+0.6
5,362,283	+		Psyr_4499	0.43	+0.5
5,362,283	+		Psyr_4499	0.43	-1.8
5,362,284	-		Psyr_4499	0.43	+1.5
5,362,284	-		Psyr_4499	0.43	+0.0
5,362,346	+		Psyr_4499	0.46	+0.5
5,362,346	+		Psyr_4499	0.46	+0.4
5,362,346	+		Psyr_4499	0.46	-0.9
5,362,361	+		Psyr_4499	0.47	-1.7
5,362,362	-		Psyr_4499	0.47	+0.3
5,362,388	+		Psyr_4499	0.48	+0.5
5,362,389	-		Psyr_4499	0.48	-1.0
5,362,421	+		Psyr_4499	0.50	+0.3
5,362,421	+		Psyr_4499	0.50	-0.1
5,362,427	+		Psyr_4499	0.50	-0.7
5,362,427	+		Psyr_4499	0.50	+0.3
5,362,427	+		Psyr_4499	0.50	+1.5
5,362,427	+		Psyr_4499	0.50	-0.7
5,362,427	+		Psyr_4499	0.50	-0.4
5,362,428	-		Psyr_4499	0.50	+0.9
5,362,456	+		Psyr_4499	0.51	-0.4
5,362,456	+		Psyr_4499	0.51	-0.2
5,362,457	-		Psyr_4499	0.51	+1.5
5,362,457	-		Psyr_4499	0.51	-0.1
5,362,505	+		Psyr_4499	0.53	+0.6
5,362,506	-		Psyr_4499	0.54	+0.5
5,362,506	-		Psyr_4499	0.54	+2.9
5,362,571	+		Psyr_4499	0.57	-0.7
5,362,571	+		Psyr_4499	0.57	+2.9
5,362,595	+		Psyr_4499	0.58	-0.2
5,362,595	+		Psyr_4499	0.58	-0.6
5,362,595	+		Psyr_4499	0.58	+1.2
5,362,596	-		Psyr_4499	0.58	+2.3
5,362,596	-		Psyr_4499	0.58	+1.5
5,362,596	-		Psyr_4499	0.58	-0.4
5,362,607	+		Psyr_4499	0.58	+0.4
5,362,608	-		Psyr_4499	0.58	+0.8
5,362,622	+		Psyr_4499	0.59	-2.1
5,362,622	+		Psyr_4499	0.59	+0.9
5,362,622	+		Psyr_4499	0.59	-0.5
5,362,622	+		Psyr_4499	0.59	+0.0
5,362,623	-		Psyr_4499	0.59	-0.8
5,362,623	-		Psyr_4499	0.59	+0.8
5,362,721	+		Psyr_4499	0.64	+0.0
5,362,722	-		Psyr_4499	0.64	+2.1
5,362,722	-		Psyr_4499	0.64	-1.1
5,362,766	+		Psyr_4499	0.66	+0.2
5,362,767	-		Psyr_4499	0.66	-0.4
5,362,767	-		Psyr_4499	0.66	-0.3
5,362,805	+		Psyr_4499	0.68	+4.2
5,362,805	+		Psyr_4499	0.68	+1.2
5,362,805	+		Psyr_4499	0.68	+1.5
5,362,805	+		Psyr_4499	0.68	-1.6
5,362,805	+		Psyr_4499	0.68	+0.1
5,362,806	-		Psyr_4499	0.68	+0.6
5,362,806	-		Psyr_4499	0.68	-1.1
5,362,806	-		Psyr_4499	0.68	+0.4
5,362,806	-		Psyr_4499	0.68	-0.4
5,362,806	-		Psyr_4499	0.68	-0.8
5,362,806	-		Psyr_4499	0.68	-0.6
5,362,806	-		Psyr_4499	0.68	-0.2
5,362,832	+		Psyr_4499	0.69	+0.9
5,362,832	+		Psyr_4499	0.69	-0.6
5,362,833	-		Psyr_4499	0.69	-1.1
5,362,833	-		Psyr_4499	0.69	-0.7
5,362,833	-		Psyr_4499	0.69	-1.3
5,362,841	+		Psyr_4499	0.69	-0.3
5,362,841	+		Psyr_4499	0.69	-1.0
5,362,841	+		Psyr_4499	0.69	+1.3
5,362,842	-		Psyr_4499	0.69	+1.9
5,362,842	-		Psyr_4499	0.69	+1.5
5,362,928	+		Psyr_4499	0.73	+0.6
5,362,929	-		Psyr_4499	0.73	-0.6
5,362,957	+		Psyr_4499	0.75	+1.6
5,363,006	+		Psyr_4499	0.77	-0.6
5,363,027	+		Psyr_4499	0.78	+0.1
5,363,027	+		Psyr_4499	0.78	+1.8
5,363,027	+		Psyr_4499	0.78	-1.7
5,363,027	+		Psyr_4499	0.78	-0.2
5,363,027	+		Psyr_4499	0.78	-0.1
5,363,028	-		Psyr_4499	0.78	-1.6
5,363,028	-		Psyr_4499	0.78	+0.2
5,363,028	-		Psyr_4499	0.78	+0.7
5,363,028	-		Psyr_4499	0.78	-1.7
5,363,028	-		Psyr_4499	0.78	-0.6
5,363,028	-		Psyr_4499	0.78	+0.4
5,363,135	+		Psyr_4499	0.83	-0.1
5,363,189	+		Psyr_4499	0.86	-0.5
5,363,213	+		Psyr_4499	0.87	+1.2
5,363,213	+		Psyr_4499	0.87	-0.5
5,363,213	+		Psyr_4499	0.87	-0.5
5,363,214	-		Psyr_4499	0.87	+1.3
5,363,214	-		Psyr_4499	0.87	-0.5
5,363,420	+				-0.5
5,363,420	+				+0.5
5,363,420	+				+0.3
5,363,420	+				-0.2
5,363,420	+				+0.3
5,363,420	+				+0.3
5,363,420	+				+1.2
5,363,420	+				+0.0
5,363,421	-				+3.1
5,363,421	-				-0.4
5,363,421	-				+2.5
5,363,421	-				-1.1
5,363,421	-				+0.8
5,363,421	-				-1.6
5,363,421	-				+0.4
5,363,421	-				+0.9
5,363,421	-				-1.1
5,363,421	-				+0.1
5,363,435	+				+1.2
5,363,435	+				-2.1
5,363,436	-				+0.8
5,363,436	-				+0.8
5,363,458	+				+0.1
5,363,458	+				+1.1
5,363,458	+				+0.8
5,363,458	+				+0.6
5,363,459	-				+1.5
5,363,459	-				-0.7
5,363,459	-				-2.2
5,363,459	-				+1.5
5,363,459	-				+1.3
5,363,459	-				-2.0
5,363,459	-				+0.4
5,363,459	-				-0.8
5,363,463	+				+0.9
5,363,489	+				-0.2
5,363,523	+				-1.2
5,363,523	+				-0.6
5,363,524	-				-0.7
5,363,611	+		Psyr_4500	0.10	+1.5
5,363,612	-		Psyr_4500	0.10	-0.4
5,363,823	+		Psyr_4500	0.27	-0.8
5,363,823	+		Psyr_4500	0.27	-1.4
5,363,823	+		Psyr_4500	0.27	+4.9
5,363,823	+		Psyr_4500	0.27	+3.3
5,363,823	+		Psyr_4500	0.27	+0.1
5,363,824	-		Psyr_4500	0.27	-0.3
5,363,824	-		Psyr_4500	0.27	+1.2
5,363,824	-		Psyr_4500	0.27	+1.7
5,363,824	-		Psyr_4500	0.27	-0.5
5,363,824	-		Psyr_4500	0.27	+1.8
5,363,902	+		Psyr_4500	0.33	+1.1
5,363,902	+		Psyr_4500	0.33	+0.7
5,363,902	+		Psyr_4500	0.33	+0.2
5,363,902	+		Psyr_4500	0.33	+0.9
5,363,902	+		Psyr_4500	0.33	-2.4
5,363,902	+		Psyr_4500	0.33	+0.8
5,363,902	+		Psyr_4500	0.33	+0.7
5,363,902	+		Psyr_4500	0.33	+0.9
5,363,902	+		Psyr_4500	0.33	+2.2
5,363,903	-		Psyr_4500	0.33	+2.1
5,363,903	-		Psyr_4500	0.33	+0.1
5,363,903	-		Psyr_4500	0.33	-2.1
5,363,903	-		Psyr_4500	0.33	-0.0
5,363,903	-		Psyr_4500	0.33	+2.1
5,363,903	-		Psyr_4500	0.33	-1.2
5,363,903	-		Psyr_4500	0.33	-0.3
5,363,903	-		Psyr_4500	0.33	+0.5
5,363,908	+		Psyr_4500	0.33	+1.3
5,363,908	+		Psyr_4500	0.33	+0.7
5,363,908	+		Psyr_4500	0.33	-2.2
5,363,908	+		Psyr_4500	0.33	-0.8
5,363,908	+		Psyr_4500	0.33	-0.4
5,363,909	-		Psyr_4500	0.33	-2.0
5,363,909	-		Psyr_4500	0.33	+0.2
5,363,909	-		Psyr_4500	0.33	-0.0
5,363,909	-		Psyr_4500	0.33	+0.9
5,363,909	-		Psyr_4500	0.33	-1.3
5,364,217	-		Psyr_4500	0.57	+1.4
5,364,277	+		Psyr_4500	0.62	+0.7
5,364,278	-		Psyr_4500	0.62	+0.0
5,364,309	+		Psyr_4500	0.64	+0.2
5,364,310	-		Psyr_4500	0.65	-1.0
5,364,310	-		Psyr_4500	0.65	+1.0
5,364,328	+		Psyr_4500	0.66	-0.7
5,364,328	+		Psyr_4500	0.66	+0.3
5,364,328	+		Psyr_4500	0.66	-0.0
5,364,328	+		Psyr_4500	0.66	-2.6
5,364,329	-		Psyr_4500	0.66	-0.1
5,364,329	-		Psyr_4500	0.66	-1.5
5,364,333	+		Psyr_4500	0.66	-1.3
5,364,333	+		Psyr_4500	0.66	+0.5
5,364,333	+		Psyr_4500	0.66	+1.7
5,364,333	+		Psyr_4500	0.66	+0.1
5,364,333	+		Psyr_4500	0.66	-0.2
5,364,333	+		Psyr_4500	0.66	-0.7
5,364,333	+		Psyr_4500	0.66	+0.3
5,364,333	+		Psyr_4500	0.66	-1.2
5,364,333	+		Psyr_4500	0.66	+0.8
5,364,333	+		Psyr_4500	0.66	-0.1
5,364,333	+		Psyr_4500	0.66	+1.0
5,364,333	+		Psyr_4500	0.66	+2.4
5,364,333	+		Psyr_4500	0.66	-1.7
5,364,333	+		Psyr_4500	0.66	-0.1
5,364,333	+		Psyr_4500	0.66	-2.2
5,364,334	-		Psyr_4500	0.66	-0.8
5,364,334	-		Psyr_4500	0.66	-1.2
5,364,334	-		Psyr_4500	0.66	-0.8
5,364,334	-		Psyr_4500	0.66	+1.2
5,364,334	-		Psyr_4500	0.66	+0.8
5,364,334	-		Psyr_4500	0.66	+2.8
5,364,334	-		Psyr_4500	0.66	+1.5
5,364,334	-		Psyr_4500	0.66	+1.0
5,364,334	-		Psyr_4500	0.66	+0.2
5,364,334	-		Psyr_4500	0.66	-1.8
5,364,334	-		Psyr_4500	0.66	-0.1
5,364,334	-		Psyr_4500	0.66	-1.5
5,364,334	-		Psyr_4500	0.66	+1.1
5,364,334	-		Psyr_4500	0.66	+0.5
5,364,334	-		Psyr_4500	0.66	-0.2
5,364,334	-		Psyr_4500	0.66	-0.8
5,364,334	-		Psyr_4500	0.66	+1.1
5,364,433	-		Psyr_4500	0.74	-0.3
5,364,433	-		Psyr_4500	0.74	+1.7
5,364,436	+		Psyr_4500	0.74	+0.3
5,364,436	+		Psyr_4500	0.74	+0.3
5,364,437	-		Psyr_4500	0.74	-0.5