Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4486

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,346,593	+				+2.5
5,346,593	+				+2.1
5,346,593	+				+0.7
5,346,593	+				-0.8
5,346,593	+				+1.3
5,346,593	+				-1.9
5,346,593	+				-1.3
5,346,593	+				+1.3
5,346,593	+				+1.3
5,346,594	-				-0.8
5,346,594	-				+1.7
5,346,594	-				-0.4
5,346,594	-				+0.1
5,346,594	-				+0.8
5,346,594	-				+1.6
5,346,594	-				+0.4
5,346,594	-				-2.7
5,346,594	-				-0.1
5,346,594	-				+0.4
5,346,594	-				-0.8
5,346,594	-				-0.1
5,346,594	-				+0.9
5,346,594	-				-1.1
5,346,594	-				-0.4
5,346,594	-				-1.2
5,346,657	+				-0.6
5,346,657	+				-0.1
5,346,657	+				-0.3
5,346,657	+				+0.5
5,346,657	+				+0.9
5,346,657	+				-2.5
5,346,657	+				-1.9
5,346,657	+				-2.1
5,346,657	+				-1.1
5,346,657	+				-1.0
5,346,658	-				+0.4
5,346,658	-				-1.3
5,346,658	-				+0.3
5,346,658	-				-0.8
5,346,658	-				-0.8
5,346,658	-				-0.1
5,346,658	-				-0.2
5,346,658	-				-1.0
5,346,658	-				-0.1
5,346,658	-				+1.0
5,346,658	-				+0.1
5,346,658	-				+1.2
5,346,658	-				-1.8
5,346,658	-				+0.5
5,346,658	-				+1.5
5,346,660	-		Psyr_4484	0.10	+0.8
5,346,760	-		Psyr_4484	0.52	+0.6
5,346,760	-		Psyr_4484	0.52	+0.7
5,346,760	-		Psyr_4484	0.52	+0.1
5,346,816	+		Psyr_4484	0.75	+0.3
5,346,816	+		Psyr_4484	0.75	-2.7
5,346,816	+		Psyr_4484	0.75	-0.4
5,346,816	+		Psyr_4484	0.75	-1.0
5,346,816	+		Psyr_4484	0.75	+1.6
5,346,816	+		Psyr_4484	0.75	-0.3
5,346,816	+		Psyr_4484	0.75	+1.9
5,346,816	+		Psyr_4484	0.75	+0.9
5,346,816	+		Psyr_4484	0.75	+1.9
5,346,817	-				-0.1
5,346,817	-		Psyr_4484	0.75	+0.5
5,346,817	-		Psyr_4484	0.75	+0.2
5,346,817	-		Psyr_4484	0.75	+0.4
5,346,817	-		Psyr_4484	0.75	+0.1
5,346,817	-		Psyr_4484	0.75	+0.1
5,346,817	-		Psyr_4484	0.75	+4.4
5,346,817	-		Psyr_4484	0.75	-0.7
5,346,857	+				+0.5
5,346,857	+				+0.4
5,346,858	-				+1.0
5,346,858	-				-1.3
5,346,860	-				+0.4
5,346,873	+				-0.7
5,346,873	+				+0.0
5,346,873	+				+0.8
5,346,874	-				+2.0
5,346,874	-				-0.1
5,346,936	+				-1.8
5,346,937	-				-0.5
5,346,970	+				-0.5
5,346,970	+				-0.3
5,346,971	-				+1.0
5,346,971	-				+2.2
5,346,971	-				+1.2
5,346,971	-				-1.5
5,346,971	-				-0.6
5,347,030	-		Psyr_4485	0.13	-0.2
5,347,081	+		Psyr_4485	0.22	+0.9
5,347,082	-		Psyr_4485	0.23	-0.5
5,347,181	+		Psyr_4485	0.41	+0.5
5,347,181	+		Psyr_4485	0.41	+0.6
5,347,181	+		Psyr_4485	0.41	-0.5
5,347,181	+		Psyr_4485	0.41	+0.7
5,347,181	+		Psyr_4485	0.41	-0.8
5,347,181	+		Psyr_4485	0.41	-0.6
5,347,182	-		Psyr_4485	0.41	+0.0
5,347,182	-		Psyr_4485	0.41	+0.6
5,347,182	-		Psyr_4485	0.41	+2.1
5,347,350	+		Psyr_4485	0.71	+0.3
5,347,350	+		Psyr_4485	0.71	+0.4
5,347,350	+		Psyr_4485	0.71	-0.7
5,347,350	+		Psyr_4485	0.71	-0.4
5,347,351	-		Psyr_4485	0.71	+0.3
5,347,431	+		Psyr_4485	0.86	+1.2
5,347,431	+		Psyr_4485	0.86	+1.5
5,347,432	-		Psyr_4485	0.86	+0.9
5,347,432	-		Psyr_4485	0.86	+0.7
5,347,432	-		Psyr_4485	0.86	+0.2
5,347,465	+				+0.8
5,347,466	-				+0.6
5,347,466	-				-1.7
5,347,467	+				+1.3
5,347,467	+				-0.3
5,347,467	+				+0.4
5,347,467	+				-1.2
5,347,467	+				-0.2
5,347,467	+				+2.5
5,347,468	-				-0.8
5,347,468	-				+0.5
5,347,506	+				+0.2
5,347,553	-				-0.3
5,347,568	+				+1.5
5,347,585	+				-1.4
5,347,585	+				+2.2
5,347,586	-				-0.6
5,347,586	-				-0.5
5,347,586	-				-0.3
5,347,586	-				+0.3
5,347,586	-				+0.3
5,347,586	-				+0.7
5,347,586	-				+0.5
5,347,640	+		Psyr_4486	0.14	-2.8
5,347,641	-		Psyr_4486	0.14	-0.4
5,347,647	-		Psyr_4486	0.15	-1.0
5,347,652	+		Psyr_4486	0.16	+1.6
5,347,671	-		Psyr_4486	0.19	+0.5
5,347,697	+		Psyr_4486	0.23	-1.3
5,347,697	+		Psyr_4486	0.23	-0.6
5,347,697	+		Psyr_4486	0.23	+0.2
5,347,697	+		Psyr_4486	0.23	-1.0
5,347,697	+		Psyr_4486	0.23	+0.9
5,347,697	+		Psyr_4486	0.23	+0.1
5,347,698	-		Psyr_4486	0.23	+0.8
5,347,698	-		Psyr_4486	0.23	+0.4
5,347,698	-		Psyr_4486	0.23	+1.7
5,347,701	+		Psyr_4486	0.24	+0.5
5,347,701	+		Psyr_4486	0.24	+0.5
5,347,701	+		Psyr_4486	0.24	+0.6
5,347,701	+		Psyr_4486	0.24	-0.2
5,347,701	+		Psyr_4486	0.24	+0.7
5,347,701	+		Psyr_4486	0.24	+0.5
5,347,702	-		Psyr_4486	0.24	-0.7
5,347,783	+		Psyr_4486	0.36	-0.5
5,347,783	+		Psyr_4486	0.36	-1.3
5,347,784	-		Psyr_4486	0.37	+0.3
5,347,784	-		Psyr_4486	0.37	+0.5
5,347,808	+		Psyr_4486	0.40	+0.1
5,347,809	-		Psyr_4486	0.41	+0.4
5,347,809	-		Psyr_4486	0.41	+1.2
5,347,809	-		Psyr_4486	0.41	+0.9
5,347,809	-		Psyr_4486	0.41	-0.2
5,347,811	+		Psyr_4486	0.41	+1.0
5,347,811	+		Psyr_4486	0.41	+0.3
5,347,811	+		Psyr_4486	0.41	-1.2
5,347,812	-		Psyr_4486	0.41	+0.6
5,347,812	-		Psyr_4486	0.41	-0.7
5,347,812	-		Psyr_4486	0.41	-3.2
5,347,812	-		Psyr_4486	0.41	+0.4
5,347,842	+		Psyr_4486	0.46	-0.5
5,347,871	+		Psyr_4486	0.50	-0.5
5,347,872	-		Psyr_4486	0.50	+0.8
5,347,872	-		Psyr_4486	0.50	-1.3
5,347,873	+		Psyr_4486	0.51	-0.3
5,347,873	+		Psyr_4486	0.51	+2.0
5,347,873	+		Psyr_4486	0.51	+0.2
5,347,873	+		Psyr_4486	0.51	-0.4
5,347,873	+		Psyr_4486	0.51	+0.8
5,347,873	+		Psyr_4486	0.51	+0.0
5,347,873	+		Psyr_4486	0.51	+1.4
5,347,873	+		Psyr_4486	0.51	-0.4
5,347,873	+		Psyr_4486	0.51	-1.8
5,347,873	+		Psyr_4486	0.51	+0.9
5,347,873	+		Psyr_4486	0.51	+1.6
5,347,873	+		Psyr_4486	0.51	+0.1
5,347,873	+		Psyr_4486	0.51	-0.1
5,347,873	+		Psyr_4486	0.51	-0.4
5,347,873	+		Psyr_4486	0.51	+0.9
5,347,873	+		Psyr_4486	0.51	+6.8
5,347,873	+		Psyr_4486	0.51	-1.9
5,347,874	-		Psyr_4486	0.51	+0.9
5,347,874	-		Psyr_4486	0.51	-0.8
5,347,874	-		Psyr_4486	0.51	-1.3
5,347,874	-		Psyr_4486	0.51	+1.9
5,347,874	-		Psyr_4486	0.51	+1.0
5,347,874	-		Psyr_4486	0.51	-1.8
5,347,874	-		Psyr_4486	0.51	-1.5
5,347,874	-		Psyr_4486	0.51	+3.1
5,347,874	-		Psyr_4486	0.51	+0.5
5,347,874	-		Psyr_4486	0.51	+0.2
5,347,895	-		Psyr_4486	0.54	+1.0
5,348,007	+		Psyr_4486	0.72	-1.2
5,348,008	-		Psyr_4486	0.72	+0.3
5,348,008	-		Psyr_4486	0.72	+0.5
5,348,038	+		Psyr_4486	0.77	+0.0
5,348,077	+		Psyr_4486	0.83	+0.3
5,348,077	+		Psyr_4486	0.83	+0.9
5,348,077	+		Psyr_4486	0.83	+0.4
5,348,077	+		Psyr_4486	0.83	+1.8
5,348,078	-		Psyr_4486	0.83	-0.1
5,348,078	-		Psyr_4486	0.83	-2.2
5,348,078	-		Psyr_4486	0.83	+0.1
5,348,124	-				-1.5
5,348,206	+				-2.2
5,348,253	+				-0.1
5,348,253	+				+0.7
5,348,261	-				-0.7
5,348,271	+				+0.9
5,348,355	+				+0.5
5,348,355	+				-1.7
5,348,355	+				+0.3
5,348,356	-				-0.5
5,348,404	-				-1.2
5,348,404	-				+1.3
5,348,410	+				+0.1
5,348,423	-				-0.2
5,348,465	+				+0.7
5,348,465	+				-0.6
5,348,466	-				+0.1
5,348,466	-				+2.6
5,348,477	+				+0.7
5,348,477	+				+0.2
5,348,477	+				-0.0
5,348,477	+				+0.3
5,348,477	+				-1.1
5,348,477	+				+0.8
5,348,477	+				-0.5
5,348,477	+				-0.5
5,348,478	-				-1.6
5,348,478	-				-0.1
5,348,478	-				+0.7
5,348,478	-				-0.3
5,348,478	-				+4.2
5,348,478	-				-0.4
5,348,478	-				-0.5
5,348,478	-				+0.7
5,348,481	+				-1.3
5,348,481	+				+1.0
5,348,481	+				-1.2
5,348,481	+				-0.2
5,348,481	+				+0.1
5,348,481	+				+1.5
5,348,481	+				+1.7
5,348,482	-				-1.3
5,348,482	-				-0.7
5,348,482	-				-0.8
5,348,759	+				+1.5
5,348,759	+				+2.8
5,348,759	+				+1.3
5,348,759	+				+1.0
5,348,759	+				+1.8
5,348,759	+				-2.2
5,348,759	+				-0.9
5,348,759	+				+0.9
5,348,760	-				-1.6
5,348,760	-				+0.5
5,348,760	-				+0.4
5,348,760	-				-1.3
5,348,760	-				+2.0
5,348,760	-				+0.6
5,348,760	-				-2.1
5,348,760	-				-1.5
5,348,760	-				+0.4
5,348,760	-				-0.8
5,348,760	-				-0.0
5,348,812	+				-1.6
5,348,812	+				-0.1
5,348,812	+				-0.8
5,348,813	-				-2.6
5,348,813	-				-3.1
5,348,813	-				+1.7
5,348,813	-				+0.5
5,348,813	-				+0.4
5,348,813	-				-0.8
5,348,813	-				-1.4
5,348,813	-				+1.1
5,349,075	+		Psyr_4487	0.34	+0.0