Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4453 and Psyr_4454 are separated by 25 nucleotides Psyr_4454 and Psyr_4455 are separated by 41 nucleotides Psyr_4455 and Psyr_4456 overlap by 4 nucleotides Psyr_4456 and Psyr_4457 are separated by 85 nucleotides
Psyr_4453: Psyr_4453 - Urease accessory protein UreG, at 5,318,439 to 5,319,056
_4453
Psyr_4454: Psyr_4454 - HupE/UreJ protein, at 5,319,082 to 5,319,654
_4454
Psyr_4455: Psyr_4455 - conserved hypothetical protein, at 5,319,696 to 5,320,115
_4455
Psyr_4456: Psyr_4456 - GTP cyclohydrolase II, at 5,320,112 to 5,320,777
_4456
Psyr_4457: Psyr_4457 - thiamine-phosphate kinase, at 5,320,863 to 5,321,828
_4457
Position (kb) 5319
5320
5321 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.802 kb on + strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.803 kb on - strand, within Psyr_4453 at 5318.807 kb on - strand, within Psyr_4453 at 5318.807 kb on - strand, within Psyr_4453 at 5318.807 kb on - strand, within Psyr_4453 at 5319.088 kb on + strand at 5319.404 kb on + strand, within Psyr_4454 at 5319.404 kb on + strand, within Psyr_4454 at 5319.405 kb on - strand, within Psyr_4454 at 5319.405 kb on - strand, within Psyr_4454 at 5319.722 kb on - strand at 5319.727 kb on + strand at 5319.727 kb on + strand at 5319.728 kb on - strand at 5319.728 kb on - strand at 5319.926 kb on - strand, within Psyr_4455 at 5319.963 kb on + strand, within Psyr_4455 at 5319.963 kb on + strand, within Psyr_4455 at 5319.963 kb on + strand, within Psyr_4455 at 5320.026 kb on + strand, within Psyr_4455 at 5320.748 kb on - strand at 5320.781 kb on - strand at 5320.781 kb on - strand at 5320.781 kb on - strand at 5320.781 kb on - strand at 5320.826 kb on - strand at 5320.826 kb on - strand at 5320.826 kb on - strand at 5320.826 kb on - strand at 5320.826 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand at 5320.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 5,318,802 + Psyr_4453 0.59 -0.3 5,318,802 + Psyr_4453 0.59 -1.0 5,318,802 + Psyr_4453 0.59 +0.1 5,318,802 + Psyr_4453 0.59 -1.0 5,318,802 + Psyr_4453 0.59 +0.6 5,318,802 + Psyr_4453 0.59 -0.3 5,318,802 + Psyr_4453 0.59 +1.0 5,318,802 + Psyr_4453 0.59 -0.0 5,318,802 + Psyr_4453 0.59 -0.8 5,318,802 + Psyr_4453 0.59 +1.2 5,318,802 + Psyr_4453 0.59 -0.8 5,318,802 + Psyr_4453 0.59 -0.3 5,318,803 - Psyr_4453 0.59 -0.4 5,318,803 - Psyr_4453 0.59 +0.3 5,318,803 - Psyr_4453 0.59 -1.1 5,318,803 - Psyr_4453 0.59 +2.9 5,318,803 - Psyr_4453 0.59 -0.7 5,318,803 - Psyr_4453 0.59 +0.3 5,318,803 - Psyr_4453 0.59 -2.5 5,318,807 - Psyr_4453 0.60 +0.3 5,318,807 - Psyr_4453 0.60 -2.0 5,318,807 - Psyr_4453 0.60 -0.5 5,319,088 + -0.5 5,319,404 + Psyr_4454 0.56 +0.2 5,319,404 + Psyr_4454 0.56 +0.1 5,319,405 - Psyr_4454 0.56 -0.8 5,319,405 - Psyr_4454 0.56 -3.6 5,319,722 - -1.0 5,319,727 + -1.1 5,319,727 + +0.5 5,319,728 - -1.2 5,319,728 - -2.1 5,319,926 - Psyr_4455 0.55 +0.1 5,319,963 + Psyr_4455 0.64 -2.3 5,319,963 + Psyr_4455 0.64 -0.1 5,319,963 + Psyr_4455 0.64 -2.5 5,320,026 + Psyr_4455 0.79 -1.4 5,320,748 - +1.1 5,320,781 - +2.5 5,320,781 - -0.5 5,320,781 - +1.0 5,320,781 - +0.8 5,320,826 - +0.9 5,320,826 - +5.2 5,320,826 - +0.5 5,320,826 - -1.1 5,320,826 - -0.0 5,320,847 - +1.1 5,320,847 - -0.6 5,320,847 - -2.0 5,320,847 - +0.6 5,320,847 - -1.2 5,320,847 - +0.3 5,320,847 - -0.9 5,320,847 - -1.7 5,320,847 - +0.0
Or see this region's nucleotide sequence