Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4429

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,296,870	+		Psyr_4428	0.13	+1.5
5,296,871	-		Psyr_4428	0.13	-2.1
5,296,903	+		Psyr_4428	0.16	+1.8
5,297,008	+		Psyr_4428	0.26	+0.1
5,297,008	+		Psyr_4428	0.26	+0.0
5,297,008	+		Psyr_4428	0.26	-2.1
5,297,008	+		Psyr_4428	0.26	+1.2
5,297,008	+		Psyr_4428	0.26	+0.3
5,297,008	+		Psyr_4428	0.26	-0.5
5,297,008	+		Psyr_4428	0.26	+1.0
5,297,009	-		Psyr_4428	0.26	-0.5
5,297,009	-		Psyr_4428	0.26	+0.8
5,297,009	-		Psyr_4428	0.26	+0.0
5,297,009	-		Psyr_4428	0.26	+0.8
5,297,009	-		Psyr_4428	0.26	+0.1
5,297,009	-		Psyr_4428	0.26	-2.6
5,297,084	-		Psyr_4428	0.33	-0.3
5,297,197	+		Psyr_4428	0.44	+2.5
5,297,197	+		Psyr_4428	0.44	+2.2
5,297,197	+		Psyr_4428	0.44	+0.5
5,297,197	+		Psyr_4428	0.44	-0.2
5,297,197	+		Psyr_4428	0.44	+1.9
5,297,197	+		Psyr_4428	0.44	+1.1
5,297,198	-		Psyr_4428	0.44	-1.0
5,297,198	-		Psyr_4428	0.44	-1.3
5,297,198	-		Psyr_4428	0.44	+0.6
5,297,383	+		Psyr_4428	0.61	-0.6
5,297,383	+		Psyr_4428	0.61	+0.4
5,297,384	-		Psyr_4428	0.61	-1.4
5,297,384	-		Psyr_4428	0.61	-0.9
5,297,542	+		Psyr_4428	0.76	+0.3
5,297,542	+		Psyr_4428	0.76	-1.0
5,297,542	+		Psyr_4428	0.76	+0.2
5,297,542	+		Psyr_4428	0.76	+0.4
5,297,542	+		Psyr_4428	0.76	-1.6
5,297,542	+		Psyr_4428	0.76	-0.9
5,297,542	+		Psyr_4428	0.76	-0.7
5,297,542	+		Psyr_4428	0.76	-0.6
5,297,542	+		Psyr_4428	0.76	+0.3
5,297,542	+		Psyr_4428	0.76	+0.2
5,297,542	+		Psyr_4428	0.76	-0.0
5,297,542	+		Psyr_4428	0.76	-2.2
5,297,542	+		Psyr_4428	0.76	+0.2
5,297,542	+		Psyr_4428	0.76	-0.4
5,297,542	+		Psyr_4428	0.76	-0.3
5,297,542	+		Psyr_4428	0.76	+1.5
5,297,543	-		Psyr_4428	0.76	-2.0
5,297,543	-		Psyr_4428	0.76	-1.9
5,297,543	-		Psyr_4428	0.76	+0.2
5,297,543	-		Psyr_4428	0.76	+3.3
5,297,543	-		Psyr_4428	0.76	+0.2
5,297,543	-		Psyr_4428	0.76	-0.8
5,297,543	-		Psyr_4428	0.76	+3.6
5,297,543	-		Psyr_4428	0.76	-3.1
5,297,543	-		Psyr_4428	0.76	-1.4
5,297,543	-		Psyr_4428	0.76	+1.7
5,297,543	-		Psyr_4428	0.76	+1.0
5,297,543	-		Psyr_4428	0.76	-0.3
5,297,543	-		Psyr_4428	0.76	-0.4
5,297,543	-		Psyr_4428	0.76	+2.6
5,297,543	-		Psyr_4428	0.76	+1.2
5,297,543	-		Psyr_4428	0.76	-2.4
5,297,543	-		Psyr_4428	0.76	+0.9
5,297,543	-		Psyr_4428	0.76	-1.9
5,297,543	-		Psyr_4428	0.76	+1.9
5,297,543	-		Psyr_4428	0.76	-1.2
5,297,543	-		Psyr_4428	0.76	+0.5
5,297,710	+				+2.4
5,297,755	+				-0.5
5,297,755	+				+0.2
5,297,755	+				+1.2
5,297,755	+				+0.9
5,297,756	-				+2.3
5,297,756	-				+0.2
5,297,756	-				-0.0
5,297,756	-				-2.0
5,297,756	-				+0.3
5,297,756	-				-2.1
5,297,756	-				+0.5
5,298,000	+		Psyr_4429	0.23	-0.7
5,298,000	+		Psyr_4429	0.23	-0.9
5,298,001	-		Psyr_4429	0.23	+4.3
5,298,196	+		Psyr_4429	0.46	+0.6
5,298,197	-		Psyr_4429	0.46	-1.9
5,298,326	-		Psyr_4429	0.61	+0.6
5,298,341	+		Psyr_4429	0.63	-0.2
5,298,342	-		Psyr_4429	0.63	+0.6
5,298,342	-		Psyr_4429	0.63	+0.7
5,298,342	-		Psyr_4429	0.63	-0.9
5,298,342	-		Psyr_4429	0.63	+0.8
5,298,342	-		Psyr_4429	0.63	+0.2
5,298,424	+		Psyr_4429	0.72	-1.9
5,298,424	+		Psyr_4429	0.72	-0.4
5,298,424	+		Psyr_4429	0.72	+2.4
5,298,424	+		Psyr_4429	0.72	-0.3
5,298,424	+		Psyr_4429	0.72	+0.5
5,298,425	-		Psyr_4429	0.72	-1.7
5,298,425	-		Psyr_4429	0.72	+1.5
5,298,619	+				+1.4
5,298,619	+				+0.1
5,298,619	+				+1.4
5,298,620	-				+0.1
5,298,649	-				-0.5
5,298,649	-				+1.0
5,298,649	-				+1.7
5,298,684	-				+0.7
5,298,684	-				-2.7
5,298,701	+				-0.9
5,298,701	+				-1.3
5,298,701	+				+2.5
5,298,701	+				-0.8
5,298,701	+				-0.9
5,298,701	+				+0.7
5,298,701	+				-0.1
5,298,701	+				-1.4
5,298,701	+				+1.5
5,298,701	+				+0.9
5,298,702	-				-0.5
5,298,702	-				-1.3
5,298,702	-				+0.6
5,298,702	-				+0.1
5,298,702	-				-2.5
5,298,728	+				+3.3
5,298,728	+				+1.4
5,298,728	+				+0.1
5,298,728	+				+0.5
5,298,729	-				+1.4
5,298,729	-				+1.0
5,298,729	-				-0.8
5,298,729	-				+0.6
5,298,729	-				-1.5
5,298,729	-				-0.9
5,298,753	+				-0.2
5,298,753	+				+0.3
5,298,753	+				+0.4
5,298,753	+				+1.5
5,298,753	+				-0.2
5,298,754	-				-0.1
5,298,754	-				-1.3
5,298,754	-				+0.0
5,298,754	-				+0.2
5,298,754	-				-0.5
5,298,754	-				+2.2
5,298,754	-				-0.3
5,298,754	-				+0.9
5,298,754	-				-0.7
5,298,755	+				-0.5
5,298,755	+				+1.8
5,298,755	+				+0.7
5,298,755	+				+3.6
5,298,755	+				-0.2
5,298,755	+				-0.7
5,298,755	+				-3.1
5,298,755	+				-0.9
5,298,755	+				-1.1
5,298,755	+				+0.4
5,298,755	+				-0.5
5,298,755	+				-1.5
5,298,755	+				+0.4
5,298,755	+				-0.2
5,298,756	-				+1.9
5,298,756	-				+2.0
5,298,756	-				+3.3
5,298,756	-				+0.7
5,298,756	-				-1.8
5,298,756	-				-0.4
5,298,800	-				-0.4
5,299,009	+		Psyr_4430	0.34	+0.3
5,299,009	+		Psyr_4430	0.34	-1.3
5,299,009	+		Psyr_4430	0.34	-1.0
5,299,009	+		Psyr_4430	0.34	+0.8
5,299,009	+		Psyr_4430	0.34	+0.2
5,299,009	+		Psyr_4430	0.34	+0.7
5,299,009	+		Psyr_4430	0.34	+1.0
5,299,009	+		Psyr_4430	0.34	+1.5
5,299,010	-		Psyr_4430	0.34	-0.7
5,299,010	-		Psyr_4430	0.34	-0.2
5,299,010	-		Psyr_4430	0.34	+0.5
5,299,010	-		Psyr_4430	0.34	-0.2
5,299,010	-		Psyr_4430	0.34	-0.5
5,299,010	-		Psyr_4430	0.34	-0.5
5,299,031	+		Psyr_4430	0.37	-0.7
5,299,121	-		Psyr_4430	0.50	+0.1
5,299,203	-		Psyr_4430	0.62	+0.1
5,299,260	+		Psyr_4430	0.70	+0.5
5,299,351	+		Psyr_4430	0.83	-0.5
5,299,657	+		Psyr_4431	0.16	-1.0
5,299,658	-		Psyr_4431	0.16	-0.3