Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4262 and Psyr_4263 are separated by 74 nucleotides Psyr_4263 and Psyr_4264 are separated by 60 nucleotides Psyr_4264 and Psyr_4265 are separated by 382 nucleotides
Psyr_4262: Psyr_4262 - lipoprotein, putative, at 5,080,430 to 5,080,783
_4262
Psyr_4263: Psyr_4263 - transcription elongation factor GreB, at 5,080,858 to 5,081,355
_4263
Psyr_4264: Psyr_4264 - ABC transporter, at 5,081,416 to 5,083,080
_4264
Psyr_4265: Psyr_4265 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 5,083,463 to 5,087,299
_4265
Position (kb) 5081
5082
5083
5084 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5080.613 kb on + strand, within Psyr_4262 at 5080.632 kb on - strand, within Psyr_4262 at 5080.840 kb on + strand at 5080.840 kb on + strand at 5080.840 kb on + strand at 5080.841 kb on - strand at 5080.841 kb on - strand at 5080.841 kb on - strand at 5080.841 kb on - strand at 5080.841 kb on - strand at 5080.843 kb on + strand at 5080.844 kb on - strand at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.942 kb on + strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5080.943 kb on - strand, within Psyr_4263 at 5081.007 kb on + strand, within Psyr_4263 at 5081.007 kb on + strand, within Psyr_4263 at 5081.007 kb on + strand, within Psyr_4263 at 5081.007 kb on + strand, within Psyr_4263 at 5081.008 kb on - strand, within Psyr_4263 at 5081.074 kb on + strand, within Psyr_4263 at 5081.074 kb on + strand, within Psyr_4263 at 5081.075 kb on - strand, within Psyr_4263 at 5081.492 kb on + strand at 5081.493 kb on - strand at 5081.502 kb on - strand at 5081.502 kb on - strand at 5081.502 kb on - strand at 5081.502 kb on - strand at 5081.561 kb on - strand at 5081.801 kb on + strand, within Psyr_4264 at 5081.801 kb on + strand, within Psyr_4264 at 5081.801 kb on + strand, within Psyr_4264 at 5081.801 kb on + strand, within Psyr_4264 at 5081.801 kb on + strand, within Psyr_4264 at 5081.801 kb on + strand, within Psyr_4264 at 5081.801 kb on + strand, within Psyr_4264 at 5081.802 kb on - strand, within Psyr_4264 at 5081.802 kb on - strand, within Psyr_4264 at 5081.802 kb on - strand, within Psyr_4264 at 5081.805 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.822 kb on + strand, within Psyr_4264 at 5081.823 kb on - strand, within Psyr_4264 at 5081.823 kb on - strand, within Psyr_4264 at 5081.823 kb on - strand, within Psyr_4264 at 5081.823 kb on - strand, within Psyr_4264 at 5081.826 kb on + strand, within Psyr_4264 at 5081.827 kb on - strand, within Psyr_4264 at 5081.997 kb on + strand, within Psyr_4264 at 5082.083 kb on + strand, within Psyr_4264 at 5082.146 kb on + strand, within Psyr_4264 at 5082.146 kb on + strand, within Psyr_4264 at 5082.146 kb on + strand, within Psyr_4264 at 5082.146 kb on + strand, within Psyr_4264 at 5082.146 kb on + strand, within Psyr_4264 at 5082.146 kb on + strand, within Psyr_4264 at 5082.147 kb on - strand, within Psyr_4264 at 5082.147 kb on - strand, within Psyr_4264 at 5082.147 kb on - strand, within Psyr_4264 at 5082.147 kb on - strand, within Psyr_4264 at 5082.147 kb on - strand, within Psyr_4264 at 5082.350 kb on + strand, within Psyr_4264 at 5082.350 kb on + strand, within Psyr_4264 at 5082.350 kb on + strand, within Psyr_4264 at 5082.351 kb on - strand, within Psyr_4264 at 5082.351 kb on - strand, within Psyr_4264 at 5082.422 kb on + strand, within Psyr_4264 at 5082.423 kb on - strand, within Psyr_4264 at 5082.759 kb on - strand, within Psyr_4264 at 5082.863 kb on + strand, within Psyr_4264 at 5082.864 kb on - strand, within Psyr_4264 at 5082.864 kb on - strand, within Psyr_4264 at 5082.949 kb on - strand at 5083.064 kb on + strand at 5083.064 kb on + strand at 5083.064 kb on + strand at 5083.064 kb on + strand at 5083.064 kb on + strand at 5083.064 kb on + strand at 5083.065 kb on - strand at 5083.065 kb on - strand at 5083.065 kb on - strand at 5083.070 kb on + strand at 5083.070 kb on + strand at 5083.070 kb on + strand at 5083.070 kb on + strand at 5083.070 kb on + strand at 5083.071 kb on - strand at 5083.071 kb on - strand at 5083.071 kb on - strand at 5083.071 kb on - strand at 5083.094 kb on - strand at 5083.094 kb on - strand at 5083.094 kb on - strand at 5083.102 kb on + strand at 5083.130 kb on + strand at 5083.131 kb on - strand at 5083.131 kb on - strand at 5083.156 kb on + strand at 5083.156 kb on + strand at 5083.156 kb on + strand at 5083.156 kb on + strand at 5083.156 kb on + strand at 5083.157 kb on - strand at 5083.157 kb on - strand at 5083.157 kb on - strand at 5083.238 kb on + strand at 5083.238 kb on + strand at 5083.238 kb on + strand at 5083.238 kb on + strand at 5083.239 kb on - strand at 5083.239 kb on - strand at 5083.239 kb on - strand at 5083.240 kb on + strand at 5083.240 kb on + strand at 5083.240 kb on + strand at 5083.241 kb on - strand at 5083.254 kb on + strand at 5083.314 kb on + strand at 5083.315 kb on - strand at 5083.376 kb on + strand at 5083.377 kb on - strand at 5083.377 kb on - strand at 5083.418 kb on + strand at 5083.423 kb on - strand at 5083.423 kb on - strand at 5083.423 kb on - strand at 5083.423 kb on - strand at 5083.423 kb on - strand at 5083.502 kb on - strand at 5083.647 kb on - strand at 5083.647 kb on - strand at 5083.907 kb on + strand, within Psyr_4265 at 5083.907 kb on + strand, within Psyr_4265 at 5083.908 kb on - strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.913 kb on + strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.914 kb on - strand, within Psyr_4265 at 5083.916 kb on - strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.943 kb on + strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.944 kb on - strand, within Psyr_4265 at 5083.945 kb on + strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.946 kb on - strand, within Psyr_4265 at 5083.947 kb on + strand, within Psyr_4265 at 5083.947 kb on + strand, within Psyr_4265 at 5083.947 kb on + strand, within Psyr_4265 at 5083.947 kb on + strand, within Psyr_4265 at 5083.948 kb on - strand, within Psyr_4265 at 5083.948 kb on - strand, within Psyr_4265 at 5083.948 kb on - strand, within Psyr_4265 at 5083.983 kb on - strand, within Psyr_4265 at 5084.052 kb on - strand, within Psyr_4265
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 5,080,613 + Psyr_4262 0.52 -1.1 5,080,632 - Psyr_4262 0.57 -1.1 5,080,840 + +0.1 5,080,840 + -1.7 5,080,840 + -0.1 5,080,841 - -0.1 5,080,841 - -0.1 5,080,841 - +0.3 5,080,841 - -2.6 5,080,841 - -1.6 5,080,843 + +0.6 5,080,844 - -1.0 5,080,942 + Psyr_4263 0.17 -2.5 5,080,942 + Psyr_4263 0.17 +0.7 5,080,942 + Psyr_4263 0.17 -2.0 5,080,942 + Psyr_4263 0.17 -0.4 5,080,942 + Psyr_4263 0.17 +0.6 5,080,942 + Psyr_4263 0.17 +0.6 5,080,942 + Psyr_4263 0.17 +2.9 5,080,942 + Psyr_4263 0.17 +0.4 5,080,942 + Psyr_4263 0.17 -1.1 5,080,943 - Psyr_4263 0.17 +1.7 5,080,943 - Psyr_4263 0.17 +0.0 5,080,943 - Psyr_4263 0.17 -3.6 5,080,943 - Psyr_4263 0.17 -0.7 5,080,943 - Psyr_4263 0.17 -0.6 5,080,943 - Psyr_4263 0.17 -1.3 5,080,943 - Psyr_4263 0.17 -0.1 5,080,943 - Psyr_4263 0.17 -1.2 5,080,943 - Psyr_4263 0.17 -0.6 5,081,007 + Psyr_4263 0.30 -1.7 5,081,007 + Psyr_4263 0.30 +0.2 5,081,007 + Psyr_4263 0.30 +0.7 5,081,007 + Psyr_4263 0.30 +0.7 5,081,008 - Psyr_4263 0.30 +1.2 5,081,074 + Psyr_4263 0.43 +2.4 5,081,074 + Psyr_4263 0.43 +0.4 5,081,075 - Psyr_4263 0.44 -1.9 5,081,492 + +0.2 5,081,493 - +0.9 5,081,502 - +1.2 5,081,502 - -1.6 5,081,502 - -3.1 5,081,502 - +0.4 5,081,561 - -0.1 5,081,801 + Psyr_4264 0.23 +1.7 5,081,801 + Psyr_4264 0.23 -1.1 5,081,801 + Psyr_4264 0.23 -0.1 5,081,801 + Psyr_4264 0.23 +0.1 5,081,801 + Psyr_4264 0.23 -0.6 5,081,801 + Psyr_4264 0.23 +1.0 5,081,801 + Psyr_4264 0.23 +2.3 5,081,802 - Psyr_4264 0.23 +1.3 5,081,802 - Psyr_4264 0.23 +1.4 5,081,802 - Psyr_4264 0.23 +0.2 5,081,805 + Psyr_4264 0.23 -1.1 5,081,822 + Psyr_4264 0.24 +1.4 5,081,822 + Psyr_4264 0.24 +1.3 5,081,822 + Psyr_4264 0.24 +1.7 5,081,822 + Psyr_4264 0.24 +1.4 5,081,822 + Psyr_4264 0.24 +1.0 5,081,822 + Psyr_4264 0.24 +0.9 5,081,822 + Psyr_4264 0.24 -0.6 5,081,823 - Psyr_4264 0.24 +2.0 5,081,823 - Psyr_4264 0.24 +0.7 5,081,823 - Psyr_4264 0.24 +2.1 5,081,823 - Psyr_4264 0.24 +3.6 5,081,826 + Psyr_4264 0.25 -1.9 5,081,827 - Psyr_4264 0.25 -1.9 5,081,997 + Psyr_4264 0.35 +2.8 5,082,083 + Psyr_4264 0.40 -0.6 5,082,146 + Psyr_4264 0.44 +0.9 5,082,146 + Psyr_4264 0.44 +1.5 5,082,146 + Psyr_4264 0.44 +0.1 5,082,146 + Psyr_4264 0.44 -0.7 5,082,146 + Psyr_4264 0.44 +0.2 5,082,146 + Psyr_4264 0.44 +0.5 5,082,147 - Psyr_4264 0.44 +0.4 5,082,147 - Psyr_4264 0.44 +0.4 5,082,147 - Psyr_4264 0.44 -1.4 5,082,147 - Psyr_4264 0.44 +0.9 5,082,147 - Psyr_4264 0.44 -0.0 5,082,350 + Psyr_4264 0.56 +1.6 5,082,350 + Psyr_4264 0.56 -1.4 5,082,350 + Psyr_4264 0.56 +0.9 5,082,351 - Psyr_4264 0.56 +0.0 5,082,351 - Psyr_4264 0.56 +0.1 5,082,422 + Psyr_4264 0.60 -1.1 5,082,423 - Psyr_4264 0.60 -0.1 5,082,759 - Psyr_4264 0.81 +1.5 5,082,863 + Psyr_4264 0.87 -0.4 5,082,864 - Psyr_4264 0.87 +1.9 5,082,864 - Psyr_4264 0.87 +0.3 5,082,949 - -0.0 5,083,064 + +0.4 5,083,064 + +0.3 5,083,064 + +0.4 5,083,064 + +0.8 5,083,064 + +0.7 5,083,064 + -0.1 5,083,065 - +0.4 5,083,065 - -1.5 5,083,065 - +1.2 5,083,070 + -0.5 5,083,070 + +1.0 5,083,070 + -1.1 5,083,070 + +0.4 5,083,070 + +0.3 5,083,071 - +0.7 5,083,071 - -0.9 5,083,071 - -0.1 5,083,071 - -1.3 5,083,094 - +0.8 5,083,094 - +0.1 5,083,094 - -1.6 5,083,102 + -0.1 5,083,130 + +0.3 5,083,131 - -1.7 5,083,131 - +1.4 5,083,156 + -1.1 5,083,156 + +1.2 5,083,156 + -0.7 5,083,156 + -0.6 5,083,156 + +0.3 5,083,157 - +0.4 5,083,157 - +0.1 5,083,157 - +0.8 5,083,238 + -1.1 5,083,238 + -0.4 5,083,238 + +0.2 5,083,238 + -0.9 5,083,239 - -1.3 5,083,239 - +1.4 5,083,239 - +0.2 5,083,240 + -0.9 5,083,240 + +0.6 5,083,240 + +2.3 5,083,241 - -0.3 5,083,254 + +1.1 5,083,314 + +1.0 5,083,315 - -0.3 5,083,376 + +0.7 5,083,377 - -1.0 5,083,377 - -0.1 5,083,418 + +0.4 5,083,423 - +0.6 5,083,423 - -0.4 5,083,423 - -0.4 5,083,423 - +1.8 5,083,423 - -1.4 5,083,502 - -1.5 5,083,647 - +0.5 5,083,647 - +1.1 5,083,907 + Psyr_4265 0.12 -2.5 5,083,907 + Psyr_4265 0.12 -0.1 5,083,908 - Psyr_4265 0.12 -1.4 5,083,913 + Psyr_4265 0.12 -0.0 5,083,913 + Psyr_4265 0.12 -0.6 5,083,913 + Psyr_4265 0.12 -2.3 5,083,913 + Psyr_4265 0.12 -0.7 5,083,913 + Psyr_4265 0.12 +0.3 5,083,913 + Psyr_4265 0.12 +0.3 5,083,914 - Psyr_4265 0.12 +0.6 5,083,914 - Psyr_4265 0.12 -1.3 5,083,914 - Psyr_4265 0.12 -0.1 5,083,914 - Psyr_4265 0.12 +0.6 5,083,914 - Psyr_4265 0.12 -0.9 5,083,914 - Psyr_4265 0.12 +0.2 5,083,914 - Psyr_4265 0.12 -0.7 5,083,916 - Psyr_4265 0.12 +1.5 5,083,943 + Psyr_4265 0.13 +1.4 5,083,943 + Psyr_4265 0.13 -0.8 5,083,943 + Psyr_4265 0.13 -0.4 5,083,943 + Psyr_4265 0.13 +1.1 5,083,943 + Psyr_4265 0.13 -0.9 5,083,943 + Psyr_4265 0.13 -0.5 5,083,943 + Psyr_4265 0.13 -0.2 5,083,943 + Psyr_4265 0.13 -0.9 5,083,943 + Psyr_4265 0.13 -0.1 5,083,943 + Psyr_4265 0.13 +0.4 5,083,943 + Psyr_4265 0.13 -1.0 5,083,944 - Psyr_4265 0.13 +2.3 5,083,944 - Psyr_4265 0.13 +1.1 5,083,944 - Psyr_4265 0.13 +0.6 5,083,944 - Psyr_4265 0.13 -0.1 5,083,944 - Psyr_4265 0.13 +0.6 5,083,944 - Psyr_4265 0.13 +0.9 5,083,944 - Psyr_4265 0.13 +0.3 5,083,944 - Psyr_4265 0.13 -0.9 5,083,944 - Psyr_4265 0.13 +0.6 5,083,944 - Psyr_4265 0.13 -0.6 5,083,944 - Psyr_4265 0.13 +0.5 5,083,944 - Psyr_4265 0.13 -2.4 5,083,944 - Psyr_4265 0.13 -0.2 5,083,945 + Psyr_4265 0.13 +1.0 5,083,946 - Psyr_4265 0.13 -0.6 5,083,946 - Psyr_4265 0.13 -0.6 5,083,946 - Psyr_4265 0.13 +0.3 5,083,946 - Psyr_4265 0.13 +0.8 5,083,946 - Psyr_4265 0.13 -1.3 5,083,947 + Psyr_4265 0.13 -0.6 5,083,947 + Psyr_4265 0.13 +1.2 5,083,947 + Psyr_4265 0.13 -0.9 5,083,947 + Psyr_4265 0.13 -0.3 5,083,948 - Psyr_4265 0.13 -1.1 5,083,948 - Psyr_4265 0.13 +1.1 5,083,948 - Psyr_4265 0.13 +0.3 5,083,983 - Psyr_4265 0.14 +1.2 5,084,052 - Psyr_4265 0.15 -0.7
Or see this region's nucleotide sequence