Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4235

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,043,789	+		Psyr_4234	0.55	-1.6
5,043,790	-		Psyr_4234	0.55	-0.9
5,044,003	+		Psyr_4234	0.68	-2.0
5,044,004	-		Psyr_4234	0.68	+0.9
5,044,134	+		Psyr_4234	0.76	+1.0
5,044,134	+		Psyr_4234	0.76	+0.7
5,044,134	+		Psyr_4234	0.76	+1.0
5,044,135	-		Psyr_4234	0.76	-0.9
5,044,135	-		Psyr_4234	0.76	-0.7
5,044,135	-		Psyr_4234	0.76	+0.3
5,044,135	-		Psyr_4234	0.76	+2.4
5,044,135	-		Psyr_4234	0.76	-0.4
5,044,149	+		Psyr_4234	0.77	+0.5
5,044,149	+		Psyr_4234	0.77	+0.9
5,044,149	+		Psyr_4234	0.77	-0.0
5,044,149	+		Psyr_4234	0.77	-0.4
5,044,149	+		Psyr_4234	0.77	-0.2
5,044,149	+		Psyr_4234	0.77	+0.3
5,044,150	-		Psyr_4234	0.77	+0.3
5,044,150	-		Psyr_4234	0.77	-0.9
5,044,150	-		Psyr_4234	0.77	+0.4
5,044,191	+		Psyr_4234	0.80	-0.2
5,044,243	-		Psyr_4234	0.83	+0.7
5,044,243	-		Psyr_4234	0.83	+0.3
5,044,272	+		Psyr_4234	0.85	+0.1
5,044,273	-		Psyr_4234	0.85	-1.3
5,044,273	-		Psyr_4234	0.85	-1.4
5,044,273	-		Psyr_4234	0.85	-0.4
5,044,296	+		Psyr_4234	0.86	+0.8
5,044,357	-				-1.4
5,044,357	-				-0.3
5,044,485	+				+0.6
5,044,485	+				-1.4
5,044,485	+				-1.4
5,044,485	+				-0.2
5,044,485	+				+0.1
5,044,486	-				+1.0
5,044,512	+				-0.5
5,044,512	+				+0.2
5,044,512	+				+1.2
5,044,512	+				+0.4
5,044,513	-				-0.9
5,044,513	-				+1.0
5,044,606	+				+2.4
5,044,606	+				-0.9
5,044,704	+				+1.6
5,044,704	+				+1.4
5,044,704	+				-0.2
5,044,704	+				+1.5
5,044,704	+				-1.7
5,044,704	+				-0.9
5,044,705	-				-1.2
5,044,705	-				-1.2
5,044,705	-				+0.3
5,044,705	-				-2.0
5,044,705	-				-1.1
5,044,705	-				-0.6
5,044,705	-				-0.3
5,044,705	-				-0.0
5,044,705	-				-0.2
5,044,705	-				+1.4
5,044,705	-				-0.0
5,044,705	-				-0.9
5,044,708	+				+1.0
5,044,742	+				-1.6
5,044,901	+				+0.0
5,044,902	-				-0.6
5,044,902	-				-0.3
5,044,902	-				-0.6
5,044,902	-				-2.4
5,044,902	-				+0.6
5,044,912	+				+1.4
5,044,912	+				-0.6
5,045,033	+		Psyr_4235	0.16	-0.8
5,045,033	+		Psyr_4235	0.16	-1.9
5,045,033	+		Psyr_4235	0.16	-0.3
5,045,033	+		Psyr_4235	0.16	+1.4
5,045,034	-		Psyr_4235	0.16	-1.0
5,045,034	-		Psyr_4235	0.16	-0.7
5,045,034	-		Psyr_4235	0.16	-2.2
5,045,034	-		Psyr_4235	0.16	-2.3
5,045,034	-		Psyr_4235	0.16	-2.1
5,045,034	-		Psyr_4235	0.16	-0.2
5,045,078	+		Psyr_4235	0.19	+1.4
5,045,457	-		Psyr_4235	0.42	-1.6
5,045,457	-		Psyr_4235	0.42	+0.4
5,045,645	+		Psyr_4235	0.54	+1.4
5,045,646	-		Psyr_4235	0.54	-0.8
5,045,646	-		Psyr_4235	0.54	-0.7
5,045,654	+		Psyr_4235	0.54	-0.7
5,045,655	-		Psyr_4235	0.54	-0.8
5,045,655	-		Psyr_4235	0.54	-1.0
5,045,769	-		Psyr_4235	0.61	-1.3
5,045,822	+		Psyr_4235	0.64	-1.1
5,045,823	-		Psyr_4235	0.65	-2.9
5,045,823	-		Psyr_4235	0.65	-0.2
5,045,849	+		Psyr_4235	0.66	-1.3
5,045,849	+		Psyr_4235	0.66	-0.5
5,045,849	+		Psyr_4235	0.66	-0.9
5,045,849	+		Psyr_4235	0.66	-1.2
5,045,849	+		Psyr_4235	0.66	-1.6
5,045,849	+		Psyr_4235	0.66	-2.3
5,045,849	+		Psyr_4235	0.66	-0.2
5,045,850	-		Psyr_4235	0.66	-2.3
5,045,850	-		Psyr_4235	0.66	-1.7
5,045,942	+		Psyr_4235	0.72	+0.5
5,045,942	+		Psyr_4235	0.72	+0.2
5,045,943	-		Psyr_4235	0.72	-3.2
5,046,023	+		Psyr_4235	0.77	-1.6
5,046,023	+		Psyr_4235	0.77	+1.0
5,046,023	+		Psyr_4235	0.77	-0.3
5,046,023	+		Psyr_4235	0.77	-0.0
5,046,023	+		Psyr_4235	0.77	-0.5
5,046,023	+		Psyr_4235	0.77	-1.2
5,046,023	+		Psyr_4235	0.77	-0.5
5,046,024	-		Psyr_4235	0.77	-0.7
5,046,024	-		Psyr_4235	0.77	+0.3
5,046,024	-		Psyr_4235	0.77	-0.5
5,046,024	-		Psyr_4235	0.77	-1.5
5,046,024	-		Psyr_4235	0.77	-1.0
5,046,038	+		Psyr_4235	0.78	-0.6
5,046,039	-		Psyr_4235	0.78	-0.2
5,046,039	-		Psyr_4235	0.78	+1.1
5,046,039	-		Psyr_4235	0.78	-0.6
5,046,039	-		Psyr_4235	0.78	-1.1
5,046,039	-		Psyr_4235	0.78	+0.8
5,046,039	-		Psyr_4235	0.78	-0.9
5,046,245	+				+0.6
5,046,245	+				-0.9
5,046,246	-				-1.3
5,046,246	-				-0.2
5,046,293	-				+0.9
5,046,311	+				-0.2
5,046,312	-				+0.9
5,046,333	+				-0.3
5,046,333	+				-1.0
5,046,334	-				-0.8
5,046,334	-				-2.5
5,046,334	-				+1.1
5,046,374	+				+1.9
5,046,375	-				+0.0
5,046,446	+				+0.2
5,046,446	+				+0.3
5,046,446	+				+1.6
5,046,446	+				+0.6
5,046,446	+				+2.2
5,046,446	+				-0.0
5,046,446	+				-0.2
5,046,447	-				-0.9
5,046,447	-				-1.0
5,046,447	-				-1.2
5,046,447	-				+0.5
5,046,447	-				+1.3
5,046,456	+				-0.3
5,046,456	+				-0.4
5,046,456	+				-1.2
5,046,456	+				+0.7
5,046,456	+				+0.2
5,046,456	+				+0.7
5,046,456	+				+1.2
5,046,457	-				-3.3
5,046,457	-				-1.0
5,046,457	-				-0.7
5,046,457	-				-1.9
5,046,457	-				-0.1
5,046,457	-				-0.4
5,046,457	-				-2.2
5,046,457	-				-0.0
5,046,457	-				-0.2
5,046,502	+				+0.5
5,046,502	+				+1.9
5,046,502	+				+0.2
5,046,503	-				-1.6
5,046,503	-				-0.4
5,046,505	+				+0.8
5,046,505	+				+2.1
5,046,506	-				+0.4
5,046,506	-				-2.2
5,046,506	-				+0.8
5,046,506	-				-2.3
5,046,511	+				-0.2
5,046,511	+				+1.2
5,046,512	-				+0.9
5,046,516	+				-0.5
5,046,516	+				+1.6
5,046,516	+				-0.9
5,046,516	+				+0.2
5,046,516	+				-0.5
5,046,517	-				+0.6
5,046,517	-				-1.7
5,046,517	-				+0.6
5,046,517	-				-0.2
5,046,517	-				-0.8
5,046,517	-				+2.8
5,046,517	-				+0.0
5,046,523	+				+1.0
5,046,547	+				+3.0
5,046,547	+				+0.2
5,046,547	+				-0.8
5,046,547	+				+1.7
5,046,548	-				-1.0
5,046,548	-				+0.2
5,046,548	-				-1.1
5,046,548	-				+0.6
5,046,548	-				-0.2
5,046,548	-				-2.4
5,046,548	-				+0.0
5,046,548	-				+0.1
5,046,548	-				-1.7
5,046,548	-				-2.0
5,046,548	-				-3.1
5,046,548	-				-0.4
5,046,549	+				+2.4
5,046,549	+				+1.7
5,046,549	+				+1.6
5,046,549	+				+0.8
5,046,549	+				+1.1
5,046,549	+				+1.2
5,046,549	+				+2.0
5,046,550	-				+1.2
5,046,550	-				+1.3
5,046,550	-				+0.6
5,046,551	+				+1.4
5,046,551	+				+4.3
5,046,551	+				+1.4
5,046,552	-				-0.3
5,046,552	-				+0.1
5,046,552	-				+0.6
5,046,552	-				+2.6
5,046,552	-				-1.0
5,046,552	-				-0.7
5,046,675	+				+0.5
5,046,675	+				+1.0
5,046,675	+				+2.1
5,046,676	-				-2.3
5,046,676	-				-0.5
5,046,676	-				-0.9
5,046,676	-				-1.6
5,046,676	-				+0.5
5,046,678	-				+0.1
5,046,679	+				+1.4
5,046,679	+				+2.2
5,046,680	-				-0.4
5,046,680	-				-1.0
5,046,680	-				-0.2
5,046,680	-				+0.3
5,046,680	-				+1.7
5,046,680	-				-0.6
5,046,682	+				+1.5
5,046,682	+				-1.2
5,046,683	-				-1.4
5,046,725	-				-0.4
5,046,725	-				+0.3
5,046,842	+				+1.4
5,046,842	+				+1.1
5,046,843	-				-1.3
5,046,843	-				-0.0
5,046,843	-				-0.2
5,046,881	+		Psyr_4236	0.10	+0.2
5,046,881	+		Psyr_4236	0.10	-1.2
5,046,882	-		Psyr_4236	0.10	+0.0
5,046,882	-		Psyr_4236	0.10	-0.9
5,047,204	+		Psyr_4236	0.30	-1.2
5,047,269	-		Psyr_4236	0.35	-1.4
5,047,353	-		Psyr_4236	0.40	-1.2
5,047,377	-		Psyr_4236	0.41	+0.1