Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4221

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
5,026,177	+		Psyr_4219	0.85	+0.3
5,026,177	+		Psyr_4219	0.85	+1.0
5,026,177	+		Psyr_4219	0.85	+0.7
5,026,177	+		Psyr_4219	0.85	+0.3
5,026,178	-		Psyr_4219	0.85	+0.9
5,026,206	+				-1.5
5,026,206	+				-0.7
5,026,207	-				+0.6
5,026,215	+				+0.0
5,026,249	-				-0.3
5,026,249	-				+0.7
5,026,296	+				-1.2
5,026,296	+				-0.6
5,026,296	+				+0.8
5,026,297	-				+2.9
5,026,297	-				-1.2
5,026,297	-				+0.4
5,026,297	-				-0.8
5,026,297	-				+1.1
5,026,297	-				-0.3
5,026,297	-				+0.4
5,026,350	-		Psyr_4220	0.19	-0.2
5,026,350	-		Psyr_4220	0.19	-2.0
5,026,378	+		Psyr_4220	0.25	-0.2
5,026,378	+		Psyr_4220	0.25	-0.6
5,026,379	-		Psyr_4220	0.25	+1.1
5,026,420	+		Psyr_4220	0.34	-1.7
5,026,420	+		Psyr_4220	0.34	-0.9
5,026,421	-		Psyr_4220	0.34	-1.1
5,026,421	-		Psyr_4220	0.34	-0.7
5,026,561	+		Psyr_4220	0.65	-1.7
5,026,561	+		Psyr_4220	0.65	-1.5
5,026,561	+		Psyr_4220	0.65	-0.2
5,026,561	+		Psyr_4220	0.65	+0.4
5,026,561	+		Psyr_4220	0.65	-0.3
5,026,562	-		Psyr_4220	0.65	+0.8
5,026,562	-		Psyr_4220	0.65	+0.1
5,026,613	-		Psyr_4220	0.77	+0.5
5,026,660	+		Psyr_4220	0.87	+0.6
5,026,713	+				+0.7
5,026,714	-				-0.5
5,026,744	-				+0.4
5,026,904	+				-0.1
5,026,909	+				+0.8
5,026,909	+				-0.2
5,026,913	+				-1.0
5,026,913	+				+0.5
5,026,914	-				-1.6
5,026,914	-				-0.8
5,026,953	+				-0.3
5,026,984	+				+0.9
5,026,984	+				-0.0
5,026,985	-				+1.8
5,026,985	-				+0.2
5,026,985	-				+0.4
5,027,026	+				+0.3
5,027,048	+				-0.3
5,027,049	-				+1.6
5,027,051	-				+1.2
5,027,051	-				+1.0
5,027,051	-				-1.6
5,027,064	+				+0.3
5,027,159	+				+0.2
5,027,160	-				-0.5
5,027,160	-				+1.6
5,027,173	+				-0.7
5,027,173	+				-0.9
5,027,173	+				+0.6
5,027,173	+				-1.4
5,027,173	+				-1.3
5,027,173	+				+0.8
5,027,173	+				+1.4
5,027,173	+				+1.8
5,027,174	-				+1.2
5,027,174	-				+1.2
5,027,174	-				+0.4
5,027,300	+		Psyr_4221	0.12	+0.4
5,027,300	+		Psyr_4221	0.12	-0.1
5,027,300	+		Psyr_4221	0.12	+0.1
5,027,300	+		Psyr_4221	0.12	+0.1
5,027,300	+		Psyr_4221	0.12	+1.0
5,027,300	+		Psyr_4221	0.12	+1.4
5,027,301	-		Psyr_4221	0.12	+4.9
5,027,301	-		Psyr_4221	0.12	+0.7
5,027,301	-		Psyr_4221	0.12	-0.9
5,027,301	-		Psyr_4221	0.12	+1.7
5,027,301	-		Psyr_4221	0.12	-1.8
5,027,301	-		Psyr_4221	0.12	+0.8
5,027,320	-		Psyr_4221	0.13	+0.8
5,027,320	-		Psyr_4221	0.13	+0.9
5,027,320	-		Psyr_4221	0.13	+1.0
5,027,320	-		Psyr_4221	0.13	-0.4
5,027,419	-		Psyr_4221	0.18	-0.0
5,027,421	+		Psyr_4221	0.19	+3.2
5,027,422	-		Psyr_4221	0.19	+0.9
5,027,422	-		Psyr_4221	0.19	+1.1
5,027,607	+		Psyr_4221	0.29	-1.3
5,027,607	+		Psyr_4221	0.29	+0.6
5,027,607	+		Psyr_4221	0.29	-0.7
5,027,607	+		Psyr_4221	0.29	+1.1
5,027,607	+		Psyr_4221	0.29	+1.1
5,027,608	-		Psyr_4221	0.29	+0.7
5,027,608	-		Psyr_4221	0.29	-0.8
5,027,608	-		Psyr_4221	0.29	+1.2
5,027,608	-		Psyr_4221	0.29	+2.5
5,027,608	-		Psyr_4221	0.29	+1.1
5,027,633	+		Psyr_4221	0.30	+0.8
5,027,633	+		Psyr_4221	0.30	+1.0
5,027,633	+		Psyr_4221	0.30	+1.4
5,027,633	+		Psyr_4221	0.30	-2.0
5,027,633	+		Psyr_4221	0.30	-0.6
5,027,634	-		Psyr_4221	0.30	-0.3
5,027,634	-		Psyr_4221	0.30	-0.3
5,027,634	-		Psyr_4221	0.30	-0.0
5,027,634	-		Psyr_4221	0.30	-2.3
5,027,634	-		Psyr_4221	0.30	+0.8
5,027,664	+		Psyr_4221	0.32	-0.3
5,027,665	-		Psyr_4221	0.32	+0.4
5,027,690	+		Psyr_4221	0.33	+0.3
5,027,690	+		Psyr_4221	0.33	+1.8
5,027,691	-		Psyr_4221	0.33	-1.1
5,027,805	+		Psyr_4221	0.40	-0.8
5,027,805	+		Psyr_4221	0.40	+0.4
5,027,805	+		Psyr_4221	0.40	-1.2
5,027,805	+		Psyr_4221	0.40	-0.8
5,027,805	+		Psyr_4221	0.40	+0.2
5,027,805	+		Psyr_4221	0.40	-0.6
5,027,805	+		Psyr_4221	0.40	+0.1
5,027,806	-		Psyr_4221	0.40	-1.4
5,027,806	-		Psyr_4221	0.40	-0.0
5,027,820	-		Psyr_4221	0.40	+2.2
5,027,915	+		Psyr_4221	0.46	+0.3
5,028,048	+		Psyr_4221	0.53	-1.9
5,028,048	+		Psyr_4221	0.53	+0.5
5,028,048	+		Psyr_4221	0.53	-1.7
5,028,048	+		Psyr_4221	0.53	+0.2
5,028,048	+		Psyr_4221	0.53	-1.7
5,028,048	+		Psyr_4221	0.53	+1.1
5,028,049	-		Psyr_4221	0.53	+0.4
5,028,049	-		Psyr_4221	0.53	-1.1
5,028,049	-		Psyr_4221	0.53	+2.1
5,028,049	-		Psyr_4221	0.53	+0.3
5,028,117	+		Psyr_4221	0.57	-1.1
5,028,117	+		Psyr_4221	0.57	+0.4
5,028,118	-		Psyr_4221	0.57	-0.3
5,028,118	-		Psyr_4221	0.57	-1.8
5,028,118	-		Psyr_4221	0.57	-0.3
5,028,118	-		Psyr_4221	0.57	+2.0
5,028,179	+		Psyr_4221	0.60	+0.4
5,028,179	+		Psyr_4221	0.60	+0.7
5,028,180	-		Psyr_4221	0.60	+1.7
5,028,436	+		Psyr_4221	0.74	-0.7
5,028,436	+		Psyr_4221	0.74	-0.9
5,028,437	-		Psyr_4221	0.74	-2.2
5,028,437	-		Psyr_4221	0.74	+0.3
5,028,437	-		Psyr_4221	0.74	+1.4
5,028,582	+		Psyr_4221	0.82	-0.6
5,028,582	+		Psyr_4221	0.82	+0.5
5,028,582	+		Psyr_4221	0.82	+0.8
5,028,583	-		Psyr_4221	0.82	+0.7
5,028,583	-		Psyr_4221	0.82	-0.1
5,028,583	-		Psyr_4221	0.82	+0.1
5,028,706	-		Psyr_4221	0.89	-0.2
5,028,787	-				-2.7
5,028,787	-				+0.2
5,028,903	+				+0.4
5,028,903	+				-0.1
5,028,904	-				+0.4
5,028,909	+				-0.4
5,028,909	+				-1.4
5,028,910	-				+2.0
5,028,910	-				-0.7
5,028,910	-				+0.4
5,028,910	-				-1.0
5,028,971	-				-1.4
5,029,037	+				+0.8
5,029,056	+				-3.0
5,029,094	+		Psyr_4222	0.12	-0.1
5,029,147	+		Psyr_4222	0.19	-0.7
5,029,147	+		Psyr_4222	0.19	-0.2
5,029,147	+		Psyr_4222	0.19	+1.6
5,029,408	+		Psyr_4222	0.52	+0.3
5,029,593	+		Psyr_4222	0.76	+0.4
5,029,594	-		Psyr_4222	0.76	-0.6
5,029,684	+		Psyr_4222	0.87	+0.6
5,029,684	+		Psyr_4222	0.87	-1.0
5,029,684	+		Psyr_4222	0.87	-0.4
5,029,685	-		Psyr_4222	0.88	+0.2
5,029,685	-		Psyr_4222	0.88	-0.8
5,029,685	-		Psyr_4222	0.88	+3.0
5,029,685	-		Psyr_4222	0.88	+0.2
5,029,699	-		Psyr_4222	0.89	-0.7
5,029,746	+				+1.4
5,029,746	+				+0.9