Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4132

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
4,921,945	+		Psyr_4131	0.76	-1.4
4,921,948	+		Psyr_4131	0.76	+0.3
4,921,948	+		Psyr_4131	0.76	+0.4
4,921,948	+		Psyr_4131	0.76	-2.6
4,921,949	-		Psyr_4131	0.76	+0.6
4,921,949	-		Psyr_4131	0.76	+3.1
4,922,052	+		Psyr_4131	0.87	+0.8
4,922,083	+				+0.1
4,922,083	+				-0.8
4,922,083	+				+1.7
4,922,084	-				-0.6
4,922,086	+				+1.1
4,922,086	+				-1.6
4,922,086	+				+0.7
4,922,086	+				+0.4
4,922,086	+				-0.7
4,922,086	+				+0.8
4,922,086	+				-0.5
4,922,087	-				+0.7
4,922,087	-				-1.6
4,922,087	-				-0.6
4,922,087	-				+0.3
4,922,087	-				+0.2
4,922,090	+				-1.3
4,922,090	+				+0.2
4,922,090	+				+1.6
4,922,090	+				+1.6
4,922,090	+				+1.4
4,922,091	-				+0.7
4,922,091	-				+2.0
4,922,091	-				+0.3
4,922,091	-				-2.3
4,922,091	-				-0.5
4,922,160	+				-0.8
4,922,174	+				+0.4
4,922,174	+				-0.1
4,922,174	+				-0.4
4,922,174	+				-0.6
4,922,175	-				+1.0
4,922,184	-				-2.2
4,922,189	-				-0.3
4,922,360	+				-0.8
4,922,402	-				-2.3
4,922,402	-				-1.4
4,922,412	-				-0.5
4,922,412	-				-0.1
4,922,412	-				-1.4
4,922,412	-				-3.3
4,922,414	-				-1.9
4,922,414	-				-2.1
4,922,414	-				+0.5
4,922,416	-				+0.4
4,922,416	-				-1.8
4,922,416	-				+0.7
4,922,416	-				+2.1
4,922,676	+				+0.1
4,922,677	-				+2.4
4,922,677	-				-0.4
4,922,680	+				-0.6
4,922,680	+				-1.8
4,922,680	+				+1.4
4,922,680	+				+1.0
4,922,680	+				-0.9
4,922,680	+				+1.4
4,922,680	+				-0.7
4,922,680	+				-0.6
4,922,680	+				-0.3
4,922,680	+				-0.2
4,922,681	-				+0.4
4,922,681	-				+0.1
4,922,681	-				+1.4
4,922,681	-				+2.6
4,922,681	-				+0.4
4,922,681	-				-3.4
4,922,681	-				+1.7
4,922,681	-				+2.8
4,923,059	-		Psyr_4132	0.30	-0.8
4,923,218	-		Psyr_4132	0.45	+0.5
4,923,246	+		Psyr_4132	0.48	-0.7
4,923,246	+		Psyr_4132	0.48	-1.4
4,923,246	+		Psyr_4132	0.48	-1.5
4,923,246	+		Psyr_4132	0.48	-3.1
4,923,246	+		Psyr_4132	0.48	-1.9
4,923,246	+		Psyr_4132	0.48	-2.5
4,923,246	+		Psyr_4132	0.48	-2.8
4,923,246	+		Psyr_4132	0.48	-1.4
4,923,246	+		Psyr_4132	0.48	-2.0
4,923,246	+		Psyr_4132	0.48	+0.0
4,923,246	+		Psyr_4132	0.48	+0.7
4,923,246	+		Psyr_4132	0.48	-2.1
4,923,246	+		Psyr_4132	0.48	+0.9
4,923,246	+		Psyr_4132	0.48	-2.4
4,923,246	+		Psyr_4132	0.48	+1.1
4,923,247	-		Psyr_4132	0.48	-2.8
4,923,247	-		Psyr_4132	0.48	-1.2
4,923,247	-		Psyr_4132	0.48	-1.2
4,923,247	-		Psyr_4132	0.48	-1.2
4,923,423	+		Psyr_4132	0.64	+0.4
4,923,436	-		Psyr_4132	0.66	-2.5
4,923,447	+		Psyr_4132	0.67	-2.3
4,923,447	+		Psyr_4132	0.67	-1.8
4,923,448	-		Psyr_4132	0.67	-2.1
4,923,465	+		Psyr_4132	0.68	-0.8
4,923,465	+		Psyr_4132	0.68	-2.5
4,923,466	-		Psyr_4132	0.69	-0.5
4,923,466	-		Psyr_4132	0.69	-1.4
4,923,558	-		Psyr_4132	0.77	-0.4
4,923,579	+		Psyr_4132	0.79	-2.5
4,923,580	-		Psyr_4132	0.79	-2.1
4,923,580	-		Psyr_4132	0.79	-1.2
4,923,580	-		Psyr_4132	0.79	-1.4
4,923,580	-		Psyr_4132	0.79	-3.1
4,923,580	-		Psyr_4132	0.79	-0.9
4,923,580	-		Psyr_4132	0.79	-0.7
4,923,580	-		Psyr_4132	0.79	-2.4
4,923,580	-		Psyr_4132	0.79	-2.1
4,923,580	-		Psyr_4132	0.79	-2.0
4,923,583	-		Psyr_4132	0.80	-0.6
4,923,753	+				+0.0
4,923,753	+				-1.2
4,923,753	+				+0.4
4,923,753	+				-0.4
4,923,753	+				-1.6
4,923,754	-				-0.6
4,923,754	-				-3.8
4,923,754	-				+0.0
4,923,754	-				-1.7
4,923,754	-				-2.9
4,923,754	-				-0.9
4,923,754	-				-1.6
4,923,797	+				-1.8
4,923,797	+				-0.7
4,923,797	+				-1.8
4,923,797	+				-1.2
4,923,798	-				-3.4
4,923,798	-				-0.2
4,923,798	-				-0.5
4,923,798	-				-0.6
4,923,941	+		Psyr_4133	0.11	-2.2
4,923,941	+		Psyr_4133	0.11	-1.1
4,923,941	+		Psyr_4133	0.11	+0.1
4,923,941	+		Psyr_4133	0.11	-2.2
4,923,941	+		Psyr_4133	0.11	-0.2
4,923,941	+		Psyr_4133	0.11	-2.1
4,923,941	+		Psyr_4133	0.11	-0.8
4,923,941	+		Psyr_4133	0.11	-0.2
4,923,941	+		Psyr_4133	0.11	-3.2
4,923,942	-		Psyr_4133	0.11	+1.0
4,923,942	-		Psyr_4133	0.11	+0.4
4,923,942	-		Psyr_4133	0.11	+5.1
4,923,942	-		Psyr_4133	0.11	-1.6
4,923,942	-		Psyr_4133	0.11	-0.2
4,923,942	-		Psyr_4133	0.11	-2.3
4,923,942	-		Psyr_4133	0.11	-1.6
4,923,942	-		Psyr_4133	0.11	+0.8
4,923,942	-		Psyr_4133	0.11	-2.3
4,924,478	+		Psyr_4133	0.51	-2.9
4,924,478	+		Psyr_4133	0.51	-0.5
4,924,478	+		Psyr_4133	0.51	-0.3
4,924,478	+		Psyr_4133	0.51	-1.6
4,924,478	+		Psyr_4133	0.51	-2.9
4,924,478	+		Psyr_4133	0.51	-0.2
4,924,478	+		Psyr_4133	0.51	-1.4
4,924,478	+		Psyr_4133	0.51	-1.2
4,924,478	+		Psyr_4133	0.51	-0.8
4,924,478	+		Psyr_4133	0.51	-2.6
4,924,478	+		Psyr_4133	0.51	-2.1
4,924,478	+		Psyr_4133	0.51	-2.4
4,924,478	+		Psyr_4133	0.51	-1.5
4,924,478	+		Psyr_4133	0.51	-1.2
4,924,478	+		Psyr_4133	0.51	-2.1
4,924,478	+		Psyr_4133	0.51	-0.9
4,924,478	+		Psyr_4133	0.51	-3.6
4,924,479	-		Psyr_4133	0.51	-2.1
4,924,479	-		Psyr_4133	0.51	-1.1
4,924,479	-		Psyr_4133	0.51	-2.7
4,924,479	-		Psyr_4133	0.51	-3.4
4,924,479	-		Psyr_4133	0.51	-2.5
4,924,479	-		Psyr_4133	0.51	-2.3
4,924,479	-		Psyr_4133	0.51	-0.8
4,924,479	-		Psyr_4133	0.51	-0.6
4,924,479	-		Psyr_4133	0.51	-0.0
4,924,479	-		Psyr_4133	0.51	-2.2
4,924,479	-		Psyr_4133	0.51	-0.8
4,924,479	-		Psyr_4133	0.51	-1.9
4,924,479	-		Psyr_4133	0.51	+1.7
4,924,479	-		Psyr_4133	0.51	-0.1
4,924,479	-		Psyr_4133	0.51	-0.9
4,924,479	-		Psyr_4133	0.51	+0.6
4,924,479	-		Psyr_4133	0.51	+0.2
4,924,482	+		Psyr_4133	0.51	-1.2
4,924,483	-		Psyr_4133	0.51	-0.9
4,924,532	+		Psyr_4133	0.55	-2.9
4,924,736	+		Psyr_4133	0.70	-0.3
4,924,736	+		Psyr_4133	0.70	-1.8
4,924,737	-		Psyr_4133	0.70	-3.2