Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3944

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
4,690,499	-				-0.3
4,690,499	-				-1.3
4,690,568	+				+0.7
4,690,839	+		Psyr_3943	0.39	+2.3
4,690,839	+		Psyr_3943	0.39	+0.5
4,690,839	+		Psyr_3943	0.39	+1.0
4,690,839	+		Psyr_3943	0.39	+1.3
4,690,839	+		Psyr_3943	0.39	-0.3
4,690,839	+		Psyr_3943	0.39	+3.5
4,690,839	+		Psyr_3943	0.39	+1.8
4,690,840	-		Psyr_3943	0.39	+0.5
4,690,840	-		Psyr_3943	0.39	+0.5
4,690,840	-		Psyr_3943	0.39	+0.2
4,690,840	-		Psyr_3943	0.39	-1.5
4,690,840	-		Psyr_3943	0.39	-2.7
4,690,840	-		Psyr_3943	0.39	-0.9
4,690,840	-		Psyr_3943	0.39	+1.2
4,690,840	-		Psyr_3943	0.39	+1.1
4,690,840	-		Psyr_3943	0.39	+0.5
4,690,840	-		Psyr_3943	0.39	-1.1
4,690,840	-		Psyr_3943	0.39	+1.3
4,690,845	+		Psyr_3943	0.40	-1.4
4,690,846	-		Psyr_3943	0.40	-3.0
4,691,036	+		Psyr_3943	0.68	+0.9
4,691,036	+		Psyr_3943	0.68	-0.1
4,691,036	+		Psyr_3943	0.68	-0.9
4,691,036	+		Psyr_3943	0.68	+0.4
4,691,036	+		Psyr_3943	0.68	-0.2
4,691,037	-		Psyr_3943	0.69	-2.1
4,691,089	+		Psyr_3943	0.76	-0.3
4,691,089	+		Psyr_3943	0.76	+0.8
4,691,090	-		Psyr_3943	0.76	+0.5
4,691,090	-		Psyr_3943	0.76	-1.0
4,691,090	-		Psyr_3943	0.76	-0.1
4,691,090	-		Psyr_3943	0.76	-1.7
4,691,090	-		Psyr_3943	0.76	+0.4
4,691,090	-		Psyr_3943	0.76	+0.4
4,691,159	+		Psyr_3943	0.87	+0.3
4,691,159	+		Psyr_3943	0.87	+0.2
4,691,160	-		Psyr_3943	0.87	+0.0
4,691,223	-				-0.5
4,691,233	+				+0.1
4,691,233	+				+1.9
4,691,233	+				-0.3
4,691,233	+				-2.1
4,691,233	+				+0.2
4,691,234	-				+1.6
4,691,234	-				+0.6
4,691,234	-				+0.9
4,691,237	+				+1.4
4,691,237	+				-0.2
4,691,238	-				-1.5
4,691,238	-				+1.5
4,691,279	-				+0.3
4,691,279	-				+0.7
4,691,287	+				+0.9
4,691,287	+				+1.3
4,691,288	-				-2.5
4,691,288	-				-1.1
4,691,288	-				-0.8
4,691,288	-				-0.5
4,691,288	-				+0.5
4,691,323	+				+0.8
4,691,323	+				+0.4
4,691,324	-				+1.5
4,691,368	-				+1.7
4,691,368	-				-0.1
4,691,396	+				-0.4
4,691,396	+				-2.0
4,691,396	+				-1.2
4,691,396	+				-3.8
4,691,397	-				+1.0
4,691,397	-				+1.0
4,691,397	-				-1.0
4,691,397	-				+0.6
4,691,397	-				+0.9
4,691,548	-				+0.9
4,691,548	-				+0.3
4,691,548	-				+5.4
4,691,782	+		Psyr_3944	0.15	+0.6
4,691,858	-		Psyr_3944	0.18	-0.6
4,691,965	-		Psyr_3944	0.22	+0.4
4,691,965	-		Psyr_3944	0.22	+1.6
4,691,985	+		Psyr_3944	0.23	-0.1
4,691,986	-		Psyr_3944	0.23	+1.6
4,691,986	-		Psyr_3944	0.23	+1.3
4,691,986	-		Psyr_3944	0.23	+1.0
4,692,067	+		Psyr_3944	0.26	+0.3
4,692,067	+		Psyr_3944	0.26	-1.2
4,692,076	+		Psyr_3944	0.27	+0.5
4,692,076	+		Psyr_3944	0.27	+2.0
4,692,077	-		Psyr_3944	0.27	+0.1
4,692,077	-		Psyr_3944	0.27	-1.8
4,692,077	-		Psyr_3944	0.27	-0.7
4,692,393	+		Psyr_3944	0.40	+1.5
4,692,411	+		Psyr_3944	0.41	+0.1
4,692,412	-		Psyr_3944	0.41	-1.3
4,692,412	-		Psyr_3944	0.41	-0.1
4,692,412	-		Psyr_3944	0.41	+1.1
4,692,558	+		Psyr_3944	0.47	-2.3
4,692,558	+		Psyr_3944	0.47	-1.1
4,692,558	+		Psyr_3944	0.47	-0.4
4,692,558	+		Psyr_3944	0.47	+0.0
4,692,559	-		Psyr_3944	0.47	-2.5
4,692,559	-		Psyr_3944	0.47	-0.3
4,692,559	-		Psyr_3944	0.47	-0.5
4,692,723	+		Psyr_3944	0.54	-0.2
4,692,723	+		Psyr_3944	0.54	+0.5
4,692,723	+		Psyr_3944	0.54	-1.3
4,692,723	+		Psyr_3944	0.54	+0.5
4,692,723	+		Psyr_3944	0.54	+0.9
4,692,723	+		Psyr_3944	0.54	+0.9
4,692,723	+		Psyr_3944	0.54	-3.0
4,692,723	+		Psyr_3944	0.54	+0.8
4,692,723	+		Psyr_3944	0.54	-1.0
4,692,723	+		Psyr_3944	0.54	+1.8
4,692,723	+		Psyr_3944	0.54	-0.6
4,692,723	+		Psyr_3944	0.54	+0.5
4,692,723	+		Psyr_3944	0.54	+1.0
4,692,723	+		Psyr_3944	0.54	+3.5
4,692,724	-		Psyr_3944	0.54	+0.5
4,692,724	-		Psyr_3944	0.54	-0.5
4,692,724	-		Psyr_3944	0.54	+1.3
4,692,724	-		Psyr_3944	0.54	+0.4
4,692,724	-		Psyr_3944	0.54	+0.7
4,692,724	-		Psyr_3944	0.54	-1.3
4,692,724	-		Psyr_3944	0.54	+1.5
4,692,724	-		Psyr_3944	0.54	+2.3
4,692,724	-		Psyr_3944	0.54	+0.0
4,692,724	-		Psyr_3944	0.54	-0.4
4,692,724	-		Psyr_3944	0.54	-1.9
4,692,724	-		Psyr_3944	0.54	-0.5
4,692,724	-		Psyr_3944	0.54	-0.3
4,692,724	-		Psyr_3944	0.54	+0.3
4,692,724	-		Psyr_3944	0.54	-0.6
4,692,724	-		Psyr_3944	0.54	+0.4
4,692,724	-		Psyr_3944	0.54	+0.0
4,692,724	-		Psyr_3944	0.54	-1.0
4,692,724	-		Psyr_3944	0.54	+1.5
4,692,724	-		Psyr_3944	0.54	-0.7
4,692,724	-		Psyr_3944	0.54	-1.1
4,692,724	-		Psyr_3944	0.54	-3.2
4,692,724	-		Psyr_3944	0.54	-1.3
4,692,825	+		Psyr_3944	0.58	-1.0
4,692,825	+		Psyr_3944	0.58	+0.8
4,692,825	+		Psyr_3944	0.58	-0.4
4,692,825	+		Psyr_3944	0.58	+1.4
4,692,826	-		Psyr_3944	0.58	-2.4
4,692,826	-		Psyr_3944	0.58	+0.5
4,692,898	-		Psyr_3944	0.61	-0.7
4,692,898	-		Psyr_3944	0.61	-1.3
4,693,011	+		Psyr_3944	0.66	+1.0
4,693,012	-		Psyr_3944	0.66	+4.9
4,693,012	-		Psyr_3944	0.66	+3.3
4,693,013	+		Psyr_3944	0.66	+0.9
4,693,013	+		Psyr_3944	0.66	-1.4
4,693,014	-		Psyr_3944	0.66	-1.5
4,693,382	+		Psyr_3944	0.81	-0.5
4,693,382	+		Psyr_3944	0.81	-1.0
4,693,382	+		Psyr_3944	0.81	+2.9
4,693,453	-		Psyr_3944	0.84	-0.4
4,693,458	+		Psyr_3944	0.84	-0.2
4,693,458	+		Psyr_3944	0.84	-0.7
4,693,458	+		Psyr_3944	0.84	+0.7
4,693,458	+		Psyr_3944	0.84	+0.0
4,693,458	+		Psyr_3944	0.84	-0.2
4,693,459	-		Psyr_3944	0.84	-0.3
4,693,459	-		Psyr_3944	0.84	+1.6
4,693,459	-		Psyr_3944	0.84	-1.6
4,693,459	-		Psyr_3944	0.84	+2.2
4,693,459	-		Psyr_3944	0.84	+0.4
4,693,459	-		Psyr_3944	0.84	-0.2
4,693,459	-		Psyr_3944	0.84	-1.9
4,693,525	+		Psyr_3944	0.87	+0.8
4,693,525	+		Psyr_3944	0.87	-1.4
4,693,525	+		Psyr_3944	0.87	+1.1
4,693,525	+		Psyr_3944	0.87	+0.3
4,693,526	-		Psyr_3944	0.87	+1.0
4,693,526	-		Psyr_3944	0.87	-1.0
4,693,526	-		Psyr_3944	0.87	+2.7
4,693,526	-		Psyr_3944	0.87	-2.0
4,693,526	-		Psyr_3944	0.87	+0.4
4,693,526	-		Psyr_3944	0.87	-0.5
4,693,526	-		Psyr_3944	0.87	-1.0
4,693,666	+				+0.7
4,693,666	+				+0.3
4,693,666	+				+0.7
4,693,666	+				+0.6
4,693,666	+				+1.9
4,693,666	+				+0.1
4,693,667	-				+1.5
4,693,667	-				+0.7
4,693,667	-				-1.1
4,693,667	-				-0.3
4,693,667	-				+0.6
4,693,667	-				+0.8
4,693,667	-				+0.3
4,693,667	-				+1.4
4,693,667	-				+0.1
4,693,667	-				+0.3
4,693,776	+				-0.9
4,693,776	+				-0.3
4,693,777	-				-0.5
4,693,777	-				-1.5
4,693,843	-				+0.4
4,693,853	-				+0.7
4,693,853	-				-0.8
4,693,893	+				-2.2
4,694,025	-				-1.9
4,694,271	+		Psyr_3945	0.57	+1.3
4,694,271	+		Psyr_3945	0.57	-0.2
4,694,271	+		Psyr_3945	0.57	-2.3
4,694,271	+		Psyr_3945	0.57	+1.0
4,694,271	+		Psyr_3945	0.57	+0.3
4,694,271	+		Psyr_3945	0.57	+1.1
4,694,271	+		Psyr_3945	0.57	-0.2
4,694,272	-		Psyr_3945	0.58	+0.8
4,694,272	-		Psyr_3945	0.58	-0.6
4,694,272	-		Psyr_3945	0.58	-1.1
4,694,272	-		Psyr_3945	0.58	+1.3
4,694,272	-		Psyr_3945	0.58	+0.5
4,694,370	+		Psyr_3945	0.82	+2.2
4,694,370	+		Psyr_3945	0.82	+0.3
4,694,470	-				+0.5
4,694,723	-		Psyr_3946	0.25	-0.8
4,694,842	+		Psyr_3946	0.41	+1.1
4,694,843	-		Psyr_3946	0.41	+0.5
4,694,843	-		Psyr_3946	0.41	-0.7
4,694,843	-		Psyr_3946	0.41	-1.3