Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3815

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
4,535,077	+				-0.6
4,535,077	+				+1.3
4,535,078	-				+1.4
4,535,078	-				+3.7
4,535,078	-				+1.0
4,535,078	-				+0.2
4,535,083	+				-0.7
4,535,083	+				+0.7
4,535,084	-				+0.6
4,535,084	-				+0.2
4,535,086	-				+4.2
4,535,086	-				+0.2
4,535,096	-				+1.2
4,535,123	+				-1.3
4,535,123	+				+0.2
4,535,124	-				+0.5
4,535,125	+				-0.1
4,535,126	-				-1.7
4,535,137	+				-1.1
4,535,137	+				-0.8
4,535,138	-				-0.3
4,535,138	-				+1.8
4,535,138	-				-0.5
4,535,140	+				-0.3
4,535,140	+				+0.4
4,535,140	+				+0.2
4,535,140	+				-0.2
4,535,141	-				-1.0
4,535,141	-				-0.9
4,535,141	-				-0.2
4,535,141	-				-1.0
4,535,141	-				-1.0
4,535,229	-				+0.7
4,535,436	+		Psyr_3814	0.30	-1.9
4,535,440	+		Psyr_3814	0.31	+1.0
4,535,441	-		Psyr_3814	0.31	-2.1
4,535,441	-		Psyr_3814	0.31	+0.6
4,535,510	+		Psyr_3814	0.44	-1.8
4,535,510	+		Psyr_3814	0.44	-1.8
4,535,510	+		Psyr_3814	0.44	-0.6
4,535,511	-		Psyr_3814	0.44	-0.2
4,535,670	+		Psyr_3814	0.74	-1.1
4,535,708	-		Psyr_3814	0.81	-0.3
4,535,746	-		Psyr_3814	0.88	-0.1
4,535,762	+				+0.5
4,535,762	+				+0.1
4,535,762	+				+2.1
4,535,762	+				+0.1
4,535,763	-				+0.1
4,535,763	-				-1.8
4,535,763	-				-1.5
4,535,782	+				+1.4
4,535,782	+				-0.1
4,535,782	+				+1.4
4,535,783	-				+0.7
4,535,783	-				-0.2
4,535,783	-				-1.8
4,535,783	-				-0.4
4,535,806	+				-0.8
4,535,812	+				-2.8
4,535,812	+				-0.2
4,535,813	-				-2.1
4,535,879	+				+1.2
4,535,880	-				-1.3
4,535,880	-				-1.3
4,535,880	-				-1.6
4,535,880	-				+2.1
4,535,932	+				+1.7
4,535,966	+				+0.1
4,535,967	-				+2.8
4,535,968	+				-0.3
4,536,127	-				+0.4
4,536,198	+				-1.3
4,536,199	-				+0.2
4,536,247	+		Psyr_3815	0.12	+1.1
4,536,247	+		Psyr_3815	0.12	-1.1
4,536,247	+		Psyr_3815	0.12	+1.1
4,536,247	+		Psyr_3815	0.12	-1.3
4,536,333	+		Psyr_3815	0.16	-0.8
4,536,333	+		Psyr_3815	0.16	+0.4
4,536,347	+		Psyr_3815	0.17	-0.0
4,536,513	-		Psyr_3815	0.24	+2.9
4,536,513	-		Psyr_3815	0.24	+1.2
4,536,516	+		Psyr_3815	0.25	-0.1
4,536,516	+		Psyr_3815	0.25	+2.3
4,536,516	+		Psyr_3815	0.25	-1.7
4,536,516	+		Psyr_3815	0.25	-0.4
4,536,516	+		Psyr_3815	0.25	-1.4
4,536,516	+		Psyr_3815	0.25	-1.0
4,536,534	-		Psyr_3815	0.25	+0.6
4,536,624	+		Psyr_3815	0.30	+2.7
4,536,624	+		Psyr_3815	0.30	+1.6
4,536,624	+		Psyr_3815	0.30	-1.1
4,536,625	-		Psyr_3815	0.30	+0.4
4,536,625	-		Psyr_3815	0.30	+1.4
4,536,631	+		Psyr_3815	0.30	+0.9
4,536,631	+		Psyr_3815	0.30	+0.2
4,536,631	+		Psyr_3815	0.30	-0.1
4,536,631	+		Psyr_3815	0.30	+0.4
4,536,632	-		Psyr_3815	0.30	+1.1
4,536,632	-		Psyr_3815	0.30	-1.6
4,536,632	-		Psyr_3815	0.30	-0.5
4,536,633	+		Psyr_3815	0.30	+1.4
4,536,633	+		Psyr_3815	0.30	-1.0
4,536,633	+		Psyr_3815	0.30	-0.1
4,536,633	+		Psyr_3815	0.30	-0.0
4,536,634	-		Psyr_3815	0.30	-1.2
4,536,634	-		Psyr_3815	0.30	+0.7
4,536,634	-		Psyr_3815	0.30	+3.3
4,536,634	-		Psyr_3815	0.30	+0.6
4,536,634	-		Psyr_3815	0.30	-1.8
4,536,654	+		Psyr_3815	0.31	+1.2
4,536,655	-		Psyr_3815	0.31	-1.0
4,536,763	-		Psyr_3815	0.36	-0.6
4,536,782	+		Psyr_3815	0.37	-0.3
4,536,782	+		Psyr_3815	0.37	-0.5
4,536,782	+		Psyr_3815	0.37	-1.6
4,536,783	-		Psyr_3815	0.37	+0.9
4,536,783	-		Psyr_3815	0.37	+2.2
4,536,783	-		Psyr_3815	0.37	-0.3
4,536,818	-		Psyr_3815	0.39	+1.4
4,536,830	-		Psyr_3815	0.39	-0.5
4,536,830	-		Psyr_3815	0.39	+0.8
4,536,830	-		Psyr_3815	0.39	+0.2
4,537,052	-		Psyr_3815	0.50	-0.8
4,537,173	+		Psyr_3815	0.56	-0.8
4,537,173	+		Psyr_3815	0.56	-0.6
4,537,174	-		Psyr_3815	0.56	-1.5
4,537,177	+		Psyr_3815	0.56	+1.0
4,537,177	+		Psyr_3815	0.56	+0.9
4,537,178	-		Psyr_3815	0.56	-1.3
4,537,178	-		Psyr_3815	0.56	+1.0
4,537,178	-		Psyr_3815	0.56	+0.4
4,537,178	-		Psyr_3815	0.56	-2.1
4,537,178	-		Psyr_3815	0.56	-0.6
4,537,240	-		Psyr_3815	0.59	+0.6
4,537,245	+		Psyr_3815	0.59	-1.7
4,537,245	+		Psyr_3815	0.59	-0.6
4,537,245	+		Psyr_3815	0.59	+0.7
4,537,245	+		Psyr_3815	0.59	-2.2
4,537,245	+		Psyr_3815	0.59	+0.6
4,537,245	+		Psyr_3815	0.59	-0.3
4,537,245	+		Psyr_3815	0.59	+0.6
4,537,245	+		Psyr_3815	0.59	+1.0
4,537,245	+		Psyr_3815	0.59	-0.6
4,537,245	+		Psyr_3815	0.59	+3.1
4,537,245	+		Psyr_3815	0.59	-1.3
4,537,245	+		Psyr_3815	0.59	+2.3
4,537,246	-		Psyr_3815	0.59	-0.3
4,537,246	-		Psyr_3815	0.59	+0.0
4,537,246	-		Psyr_3815	0.59	-0.3
4,537,246	-		Psyr_3815	0.59	+0.7
4,537,246	-		Psyr_3815	0.59	+1.0
4,537,246	-		Psyr_3815	0.59	+1.2
4,537,246	-		Psyr_3815	0.59	+0.0
4,537,246	-		Psyr_3815	0.59	+2.4
4,537,246	-		Psyr_3815	0.59	+0.8
4,537,246	-		Psyr_3815	0.59	+0.4
4,537,246	-		Psyr_3815	0.59	-1.0
4,537,246	-		Psyr_3815	0.59	-1.3
4,537,259	+		Psyr_3815	0.60	+2.1
4,537,260	-		Psyr_3815	0.60	+0.6
4,537,260	-		Psyr_3815	0.60	+0.6
4,537,314	+		Psyr_3815	0.62	+1.7
4,537,315	-		Psyr_3815	0.62	+0.1
4,537,368	+		Psyr_3815	0.65	+0.2
4,537,368	+		Psyr_3815	0.65	-0.5
4,537,369	-		Psyr_3815	0.65	+2.0
4,537,369	-		Psyr_3815	0.65	+1.6
4,537,369	-		Psyr_3815	0.65	-1.0
4,537,371	+		Psyr_3815	0.65	+0.2
4,537,372	-		Psyr_3815	0.65	+0.2
4,537,372	-		Psyr_3815	0.65	-0.9
4,537,381	-		Psyr_3815	0.65	-2.1
4,537,381	-		Psyr_3815	0.65	-2.3
4,537,381	-		Psyr_3815	0.65	-2.8
4,537,381	-		Psyr_3815	0.65	-0.3
4,537,381	-		Psyr_3815	0.65	-0.6
4,537,612	+		Psyr_3815	0.76	+0.8
4,537,613	-		Psyr_3815	0.76	-0.3
4,537,613	-		Psyr_3815	0.76	+0.4
4,537,613	-		Psyr_3815	0.76	-1.3
4,537,750	-		Psyr_3815	0.83	-1.1
4,537,753	+		Psyr_3815	0.83	+1.2
4,537,754	-		Psyr_3815	0.83	-2.1
4,537,767	-		Psyr_3815	0.84	+0.4
4,537,816	+		Psyr_3815	0.86	+1.3
4,537,816	+		Psyr_3815	0.86	+0.6
4,537,816	+		Psyr_3815	0.86	-1.8
4,537,816	+		Psyr_3815	0.86	-0.2
4,537,816	+		Psyr_3815	0.86	+1.2
4,537,817	-		Psyr_3815	0.86	+1.4
4,537,817	-		Psyr_3815	0.86	-1.5
4,537,817	-		Psyr_3815	0.86	-0.8
4,537,840	+		Psyr_3815	0.87	+0.2
4,537,840	+		Psyr_3815	0.87	+0.4
4,537,840	+		Psyr_3815	0.87	+0.2
4,537,840	+		Psyr_3815	0.87	-1.3
4,537,840	+		Psyr_3815	0.87	-0.3
4,537,840	+		Psyr_3815	0.87	-1.3
4,537,840	+		Psyr_3815	0.87	+0.7
4,537,840	+		Psyr_3815	0.87	-0.6
4,537,840	+		Psyr_3815	0.87	-1.3
4,537,841	-		Psyr_3815	0.87	+0.0
4,537,841	-		Psyr_3815	0.87	+0.5
4,537,841	-		Psyr_3815	0.87	+1.0
4,537,841	-		Psyr_3815	0.87	+0.4
4,537,841	-		Psyr_3815	0.87	+0.2
4,537,854	+		Psyr_3815	0.88	+1.2
4,537,854	+		Psyr_3815	0.88	-0.2
4,537,891	-		Psyr_3815	0.89	+1.6
4,537,996	+				+0.2
4,537,996	+				-1.1
4,537,996	+				-1.9
4,537,996	+				-0.5
4,537,996	+				-0.1
4,537,996	+				+1.3
4,537,996	+				+0.3
4,537,996	+				+0.7
4,537,996	+				+1.2
4,537,996	+				+0.6
4,537,996	+				-0.8
4,537,996	+				-0.4
4,537,996	+				-0.7
4,537,996	+				+0.1
4,537,996	+				+1.1
4,537,997	-				-1.1
4,537,997	-				-1.1
4,537,997	-				-1.0
4,537,997	-				+0.5
4,537,997	-				+0.6
4,537,997	-				+0.7
4,537,997	-				-2.3
4,537,997	-				-0.5
4,537,997	-				+2.7
4,537,997	-				+0.7
4,537,997	-				+1.8
4,537,997	-				+0.0
4,537,997	-				-1.6
4,537,997	-				-1.3
4,537,997	-				+0.7
4,537,997	-				+0.6
4,537,997	-				-1.3
4,537,997	-				-1.0
4,537,997	-				+0.4
4,537,997	-				-0.2
4,537,997	-				+1.2
4,538,014	-				-0.3
4,538,076	-				-0.6
4,538,076	-				-0.7
4,538,076	-				-1.6
4,538,076	-				-0.5
4,538,076	-				-1.3
4,538,133	+				-1.3
4,538,133	+				-2.2
4,538,134	-				-1.2
4,538,134	-				+0.3
4,538,134	-				+0.4
4,538,134	-				+0.8
4,538,142	-				-0.3
4,538,162	+				-0.0
4,538,163	-				+0.7
4,538,163	-				-0.6
4,538,163	-				-0.3
4,538,211	+				-0.5
4,538,272	-				-0.3
4,538,346	+				+0.8
4,538,347	-				-0.1
4,538,347	-				+0.2
4,538,347	-				+0.8
4,538,371	-				+0.9
4,538,418	+				-1.6
4,538,433	+				+0.9
4,538,433	+				+2.0
4,538,434	-				+0.4
4,538,491	+				+0.0
4,538,491	+				+0.2
4,538,491	+				-1.1
4,538,491	+				+0.8
4,538,492	-				+0.9
4,538,492	-				+0.4
4,538,492	-				-0.4
4,538,492	-				-0.9
4,538,492	-				+1.2
4,538,492	-				+0.7
4,538,542	+				+0.9
4,538,543	-				+1.1
4,538,554	-				-1.5
4,538,557	-				+1.5
4,538,557	-				+1.2
4,538,557	-				-0.2
4,538,557	-				+1.0
4,538,557	-				-2.7
4,538,574	+				-0.0
4,538,574	+				+0.4
4,538,587	+				+0.7
4,538,587	+				+0.2
4,538,587	+				-1.2
4,538,587	+				+0.8
4,538,587	+				-1.1
4,538,587	+				-0.2
4,538,587	+				-1.1
4,538,587	+				+0.6
4,538,587	+				-0.4
4,538,587	+				-0.7
4,538,587	+				+0.9
4,538,587	+				-1.0
4,538,587	+				+1.4
4,538,587	+				-0.5
4,538,587	+				+0.7
4,538,587	+				+0.1
4,538,587	+				-1.9
4,538,587	+				+1.2
4,538,587	+				+0.0
4,538,587	+				+0.2
4,538,587	+				-0.6
4,538,588	-				+0.4
4,538,588	-				+0.0
4,538,588	-				-1.6
4,538,588	-				-0.1
4,538,588	-				-0.5
4,538,588	-				-0.3
4,538,588	-				+2.5
4,538,588	-				-1.1
4,538,588	-				+0.5
4,538,588	-				+1.0
4,538,588	-				+0.7
4,538,588	-				-0.2
4,538,588	-				+1.1
4,538,588	-				-1.3
4,538,588	-				-2.5
4,538,596	+				-0.9
4,538,596	+				-2.2
4,538,597	-				-1.1
4,538,597	-				+1.0
4,538,626	+				+1.2
4,538,634	+				+1.4
4,538,634	+				-2.5
4,538,634	+				-0.0
4,538,635	-				+0.7
4,538,635	-				-0.2
4,538,635	-				+0.2
4,538,659	+				+0.4
4,538,705	-				+1.2
4,538,752	+				-1.4
4,538,752	+				-0.9
4,538,753	-				+1.2
4,538,753	-				-0.4
4,538,753	-				-0.6
4,538,753	-				-1.6
4,538,754	+				-1.6
4,538,754	+				-1.6
4,538,754	+				+0.0
4,538,755	-				-1.1
4,538,770	-				+0.5
4,538,784	-				-0.3
4,538,784	-				+0.4
4,538,784	-				-1.0
4,538,784	-				-1.2
4,538,872	-				+0.2
4,538,973	-				-2.1
4,538,983	+				-2.7
4,538,983	+				-1.3
4,539,026	+				+0.9
4,539,027	-				+0.5
4,539,027	-				+0.3
4,539,095	-		Psyr_3816	0.11	-0.3