Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3279 and Psyr_3280 are separated by 1 nucleotides Psyr_3280 and Psyr_3281 are separated by 9 nucleotides Psyr_3281 and Psyr_3282 are separated by 125 nucleotides
Psyr_3279: Psyr_3279 - Cytochrome B561, bacterial, at 3,927,085 to 3,927,624
_3279
Psyr_3280: Psyr_3280 - methylthioadenosine phosphorylase, at 3,927,626 to 3,928,366
_3280
Psyr_3281: Psyr_3281 - Glycoside hydrolase, family 3, N-terminal, at 3,928,376 to 3,929,386
_3281
Psyr_3282: Psyr_3282 - transcriptional regulator, TetR family, at 3,929,512 to 3,930,228
_3282
Position (kb)
3928
3929
3930 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3927.398 kb on + strand, within Psyr_3279 at 3927.541 kb on + strand, within Psyr_3279 at 3927.541 kb on + strand, within Psyr_3279 at 3927.541 kb on + strand, within Psyr_3279 at 3927.541 kb on + strand, within Psyr_3279 at 3927.542 kb on - strand, within Psyr_3279 at 3927.542 kb on - strand, within Psyr_3279 at 3927.542 kb on - strand, within Psyr_3279 at 3927.542 kb on - strand, within Psyr_3279 at 3927.542 kb on - strand, within Psyr_3279 at 3927.542 kb on - strand, within Psyr_3279 at 3927.542 kb on - strand, within Psyr_3279 at 3927.544 kb on + strand, within Psyr_3279 at 3927.544 kb on + strand, within Psyr_3279 at 3927.544 kb on + strand, within Psyr_3279 at 3927.544 kb on + strand, within Psyr_3279 at 3927.544 kb on + strand, within Psyr_3279 at 3927.544 kb on + strand, within Psyr_3279 at 3927.544 kb on + strand, within Psyr_3279 at 3927.544 kb on + strand, within Psyr_3279 at 3927.545 kb on - strand, within Psyr_3279 at 3927.545 kb on - strand, within Psyr_3279 at 3927.545 kb on - strand, within Psyr_3279 at 3927.545 kb on - strand, within Psyr_3279 at 3927.545 kb on - strand, within Psyr_3279 at 3927.545 kb on - strand, within Psyr_3279 at 3927.545 kb on - strand, within Psyr_3279 at 3927.545 kb on - strand, within Psyr_3279 at 3927.545 kb on - strand, within Psyr_3279 at 3927.545 kb on - strand, within Psyr_3279 at 3927.622 kb on + strand at 3927.622 kb on + strand at 3927.623 kb on - strand at 3927.623 kb on - strand at 3927.623 kb on - strand at 3927.766 kb on - strand, within Psyr_3280 at 3927.895 kb on - strand, within Psyr_3280 at 3928.045 kb on - strand, within Psyr_3280 at 3928.160 kb on - strand, within Psyr_3280 at 3928.170 kb on + strand, within Psyr_3280 at 3928.279 kb on - strand, within Psyr_3280 at 3928.348 kb on + strand at 3928.480 kb on + strand, within Psyr_3281 at 3928.741 kb on - strand, within Psyr_3281 at 3928.909 kb on + strand, within Psyr_3281 at 3929.147 kb on + strand, within Psyr_3281 at 3929.147 kb on + strand, within Psyr_3281 at 3929.386 kb on + strand at 3929.398 kb on + strand at 3929.664 kb on + strand, within Psyr_3282 at 3929.810 kb on + strand, within Psyr_3282 at 3929.810 kb on + strand at 3929.810 kb on + strand, within Psyr_3282 at 3929.811 kb on - strand, within Psyr_3282 at 3929.831 kb on + strand, within Psyr_3282 at 3929.831 kb on + strand, within Psyr_3282 at 3929.831 kb on + strand, within Psyr_3282 at 3929.831 kb on + strand, within Psyr_3282 at 3929.831 kb on + strand, within Psyr_3282 at 3929.831 kb on + strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3929.832 kb on - strand, within Psyr_3282 at 3930.098 kb on + strand, within Psyr_3282 at 3930.138 kb on + strand, within Psyr_3282 at 3930.262 kb on + strand at 3930.262 kb on + strand at 3930.263 kb on - strand at 3930.263 kb on - strand at 3930.263 kb on - strand at 3930.263 kb on - strand at 3930.266 kb on + strand at 3930.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 3,927,398 + Psyr_3279 0.58 -0.5 3,927,541 + Psyr_3279 0.84 +0.4 3,927,541 + Psyr_3279 0.84 -2.5 3,927,541 + Psyr_3279 0.84 -0.3 3,927,541 + Psyr_3279 0.84 -0.5 3,927,542 - Psyr_3279 0.85 +0.5 3,927,542 - Psyr_3279 0.85 -2.4 3,927,542 - Psyr_3279 0.85 -0.4 3,927,542 - Psyr_3279 0.85 +0.8 3,927,542 - Psyr_3279 0.85 +0.1 3,927,542 - Psyr_3279 0.85 +0.1 3,927,542 - Psyr_3279 0.85 +1.3 3,927,544 + Psyr_3279 0.85 +0.1 3,927,544 + Psyr_3279 0.85 -0.7 3,927,544 + Psyr_3279 0.85 -3.0 3,927,544 + Psyr_3279 0.85 -2.1 3,927,544 + Psyr_3279 0.85 -2.1 3,927,544 + Psyr_3279 0.85 -0.3 3,927,544 + Psyr_3279 0.85 -0.7 3,927,544 + Psyr_3279 0.85 -2.1 3,927,545 - Psyr_3279 0.85 -1.5 3,927,545 - Psyr_3279 0.85 -1.2 3,927,545 - Psyr_3279 0.85 +1.2 3,927,545 - Psyr_3279 0.85 -0.2 3,927,545 - Psyr_3279 0.85 +0.7 3,927,545 - Psyr_3279 0.85 +0.5 3,927,545 - Psyr_3279 0.85 +0.0 3,927,545 - Psyr_3279 0.85 +4.3 3,927,545 - Psyr_3279 0.85 -0.2 3,927,545 - Psyr_3279 0.85 -0.2 3,927,622 + +0.1 3,927,622 + +0.4 3,927,623 - -0.8 3,927,623 - +0.5 3,927,623 - +2.4 3,927,766 - Psyr_3280 0.19 -2.4 3,927,895 - Psyr_3280 0.36 -0.1 3,928,045 - Psyr_3280 0.57 -2.7 3,928,160 - Psyr_3280 0.72 -1.4 3,928,170 + Psyr_3280 0.73 +0.1 3,928,279 - Psyr_3280 0.88 +1.5 3,928,348 + +0.9 3,928,480 + Psyr_3281 0.10 -1.3 3,928,741 - Psyr_3281 0.36 +0.5 3,928,909 + Psyr_3281 0.53 -3.2 3,929,147 + Psyr_3281 0.76 -0.4 3,929,147 + Psyr_3281 0.76 -0.8 3,929,386 + -2.5 3,929,398 + -3.6 3,929,664 + Psyr_3282 0.21 -1.5 3,929,810 + Psyr_3282 0.42 +1.1 3,929,810 + +1.5 3,929,810 + Psyr_3282 0.42 -1.5 3,929,811 - Psyr_3282 0.42 -1.4 3,929,831 + Psyr_3282 0.44 +1.4 3,929,831 + Psyr_3282 0.44 -1.3 3,929,831 + Psyr_3282 0.44 -0.9 3,929,831 + Psyr_3282 0.44 -1.3 3,929,831 + Psyr_3282 0.44 +3.5 3,929,831 + Psyr_3282 0.44 -1.4 3,929,832 - Psyr_3282 0.45 -0.1 3,929,832 - Psyr_3282 0.45 +2.9 3,929,832 - Psyr_3282 0.45 -2.1 3,929,832 - Psyr_3282 0.45 +0.6 3,929,832 - Psyr_3282 0.45 +0.2 3,929,832 - Psyr_3282 0.45 -1.9 3,929,832 - Psyr_3282 0.45 +0.9 3,929,832 - Psyr_3282 0.45 +0.8 3,929,832 - Psyr_3282 0.45 -1.4 3,929,832 - Psyr_3282 0.45 -1.5 3,929,832 - Psyr_3282 0.45 +0.1 3,930,098 + Psyr_3282 0.82 +1.9 3,930,138 + Psyr_3282 0.87 -0.1 3,930,262 + +0.1 3,930,262 + +0.3 3,930,263 - +0.3 3,930,263 - -2.1 3,930,263 - -0.7 3,930,263 - -0.6 3,930,266 + +0.4 3,930,334 - +0.2
Or see this region's nucleotide sequence