Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3268

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
3,912,494	+				-1.1
3,912,504	-				+2.4
3,912,540	+				+2.6
3,912,541	-				+1.2
3,912,541	-				+7.6
3,912,541	-				+0.1
3,912,665	-		Psyr_3267	0.13	-0.1
3,912,765	+		Psyr_3267	0.24	-0.9
3,912,793	+		Psyr_3267	0.27	-0.2
3,912,793	+		Psyr_3267	0.27	+1.6
3,912,795	+		Psyr_3267	0.28	+1.1
3,912,795	+		Psyr_3267	0.28	-0.8
3,912,795	+		Psyr_3267	0.28	+0.9
3,912,795	+		Psyr_3267	0.28	-1.3
3,912,795	+		Psyr_3267	0.28	+2.1
3,912,795	+		Psyr_3267	0.28	+0.1
3,912,795	+		Psyr_3267	0.28	+0.5
3,912,795	+		Psyr_3267	0.28	+0.2
3,912,795	+		Psyr_3267	0.28	-0.1
3,912,795	+		Psyr_3267	0.28	+1.4
3,912,795	+		Psyr_3267	0.28	-0.3
3,912,796	-		Psyr_3267	0.28	+0.0
3,912,796	-		Psyr_3267	0.28	+0.2
3,912,796	-		Psyr_3267	0.28	-1.5
3,912,796	-		Psyr_3267	0.28	+0.9
3,912,796	-		Psyr_3267	0.28	-0.8
3,912,876	+		Psyr_3267	0.37	-0.3
3,912,906	+		Psyr_3267	0.41	-0.9
3,912,906	+		Psyr_3267	0.41	+0.7
3,912,907	-		Psyr_3267	0.41	+2.9
3,912,907	-		Psyr_3267	0.41	+4.1
3,912,907	-		Psyr_3267	0.41	+1.5
3,912,907	-		Psyr_3267	0.41	-0.3
3,913,002	-		Psyr_3267	0.52	+0.1
3,913,169	-		Psyr_3267	0.71	-0.9
3,913,201	-		Psyr_3267	0.75	-2.3
3,913,287	+		Psyr_3267	0.85	+0.1
3,913,294	-		Psyr_3267	0.86	-0.7
3,913,294	-		Psyr_3267	0.86	+0.1
3,913,332	+				+0.2
3,913,332	+				+1.0
3,913,332	+				-1.6
3,913,333	-				+0.9
3,913,333	-				+0.6
3,913,333	-				-0.9
3,913,333	-				-0.3
3,913,389	+				+1.1
3,913,389	+				+0.1
3,913,389	+				+0.3
3,913,389	+				-0.1
3,913,390	-				+0.1
3,913,390	-				+0.4
3,913,390	-				-0.5
3,913,395	+				+0.5
3,913,395	+				-1.5
3,913,395	+				+0.1
3,913,395	+				+1.1
3,913,395	+				+2.6
3,913,395	+				+0.1
3,913,395	+				+0.6
3,913,395	+				-0.8
3,913,396	-				+0.3
3,913,396	-				-0.2
3,913,396	-				+1.3
3,913,411	+				-1.1
3,913,430	+				+0.1
3,913,430	+				+0.1
3,913,430	+				-1.2
3,913,431	-				-0.1
3,913,431	-				-0.2
3,913,448	+				+0.1
3,913,448	+				+1.1
3,913,448	+				-0.9
3,913,448	+				-0.8
3,913,449	-				-0.8
3,913,449	-				-1.1
3,913,449	-				-2.6
3,913,449	-				-0.7
3,913,449	-				+0.4
3,913,449	-				-1.3
3,913,474	+				-0.1
3,913,475	-				+0.4
3,913,475	-				+0.3
3,913,475	-				+0.8
3,913,476	+				-0.4
3,913,476	+				+0.9
3,913,476	+				+0.2
3,913,476	+				+5.4
3,913,476	+				-2.6
3,913,476	+				-0.1
3,913,476	+				+0.6
3,913,476	+				-0.8
3,913,476	-				-2.2
3,913,477	-				-1.9
3,913,477	-				-0.9
3,913,477	-				-0.3
3,913,477	-				+0.1
3,913,477	-				+1.2
3,913,477	-				-0.4
3,913,477	-				+0.1
3,913,477	-				+0.6
3,913,566	+				+0.6
3,913,782	+		Psyr_3268	0.31	+0.7
3,913,782	+		Psyr_3268	0.31	+1.1
3,913,799	+		Psyr_3268	0.33	-0.4
3,913,800	-		Psyr_3268	0.33	-0.5
3,913,879	+		Psyr_3268	0.41	+1.8
3,913,895	+		Psyr_3268	0.42	-0.3
3,913,896	-		Psyr_3268	0.42	+1.1
3,913,896	-		Psyr_3268	0.42	-0.0
3,913,914	+		Psyr_3268	0.44	-2.5
3,913,914	+		Psyr_3268	0.44	+0.1
3,913,914	+		Psyr_3268	0.44	-0.8
3,913,914	+		Psyr_3268	0.44	+0.8
3,913,914	+		Psyr_3268	0.44	+0.1
3,913,915	-		Psyr_3268	0.44	+3.7
3,913,940	+		Psyr_3268	0.47	+1.1
3,913,957	+		Psyr_3268	0.48	-2.0
3,913,958	-		Psyr_3268	0.48	-0.9
3,913,958	-		Psyr_3268	0.48	-1.4
3,913,990	-		Psyr_3268	0.52	-1.9
3,913,990	-		Psyr_3268	0.52	+0.9
3,914,117	+		Psyr_3268	0.64	+0.4
3,914,118	-		Psyr_3268	0.64	+0.2
3,914,235	+		Psyr_3268	0.76	+0.9
3,914,235	+		Psyr_3268	0.76	-1.3
3,914,235	+		Psyr_3268	0.76	+2.1
3,914,235	+		Psyr_3268	0.76	-1.9
3,914,235	+		Psyr_3268	0.76	-1.2
3,914,235	+		Psyr_3268	0.76	+0.1
3,914,235	+		Psyr_3268	0.76	+0.8
3,914,235	+		Psyr_3268	0.76	+1.6
3,914,235	+		Psyr_3268	0.76	+1.1
3,914,235	+		Psyr_3268	0.76	+1.6
3,914,236	-		Psyr_3268	0.76	+0.5
3,914,236	-		Psyr_3268	0.76	+0.1
3,914,236	-		Psyr_3268	0.76	+3.5
3,914,316	+		Psyr_3268	0.84	+0.1
3,914,316	+		Psyr_3268	0.84	-1.5
3,914,317	-		Psyr_3268	0.84	-0.3
3,914,317	-		Psyr_3268	0.84	+0.1
3,914,317	-		Psyr_3268	0.84	-0.1
3,914,508	+				+0.2
3,914,540	-				-0.4
3,914,654	+				+1.3
3,914,654	+				-1.1
3,914,655	-				+0.0
3,914,655	-				-0.8
3,914,765	+		Psyr_3269	0.11	+0.3
3,914,765	+		Psyr_3269	0.11	-1.1
3,914,765	+		Psyr_3269	0.11	+5.7
3,914,765	+		Psyr_3269	0.11	+1.3
3,914,765	+		Psyr_3269	0.11	+0.2
3,914,765	+		Psyr_3269	0.11	+0.9
3,914,766	-		Psyr_3269	0.11	-1.5
3,914,766	-		Psyr_3269	0.11	-3.0
3,914,781	-		Psyr_3269	0.12	+0.7
3,914,922	+		Psyr_3269	0.19	-1.3
3,914,922	+		Psyr_3269	0.19	-3.0
3,914,923	-		Psyr_3269	0.19	-0.1
3,914,923	-		Psyr_3269	0.19	-0.7
3,914,923	-		Psyr_3269	0.19	-0.9
3,914,996	+		Psyr_3269	0.23	-1.4
3,914,996	+		Psyr_3269	0.23	+1.5
3,914,996	+		Psyr_3269	0.23	+2.8
3,914,996	+		Psyr_3269	0.23	-0.2
3,914,996	+		Psyr_3269	0.23	+0.5
3,914,996	+		Psyr_3269	0.23	+1.0
3,914,997	-		Psyr_3269	0.23	-0.9
3,914,997	-		Psyr_3269	0.23	+1.4
3,914,997	-		Psyr_3269	0.23	-1.3
3,914,997	-		Psyr_3269	0.23	-1.6
3,914,997	-		Psyr_3269	0.23	+1.3
3,914,997	-		Psyr_3269	0.23	+1.4
3,914,997	-		Psyr_3269	0.23	+0.8
3,914,997	-		Psyr_3269	0.23	-1.5
3,914,997	-		Psyr_3269	0.23	-0.7
3,915,095	+		Psyr_3269	0.28	-0.5
3,915,096	-		Psyr_3269	0.28	+2.1
3,915,096	-		Psyr_3269	0.28	-3.7
3,915,107	+		Psyr_3269	0.29	-0.5
3,915,108	-		Psyr_3269	0.29	+0.2
3,915,108	-		Psyr_3269	0.29	+0.3
3,915,108	-		Psyr_3269	0.29	-1.4
3,915,108	-		Psyr_3269	0.29	+1.6
3,915,108	-		Psyr_3269	0.29	+0.6
3,915,108	-		Psyr_3269	0.29	+1.5
3,915,111	+		Psyr_3269	0.29	-0.0
3,915,111	+		Psyr_3269	0.29	+0.8
3,915,111	+		Psyr_3269	0.29	-0.2
3,915,112	-		Psyr_3269	0.29	+0.8
3,915,116	-		Psyr_3269	0.29	+0.8
3,915,116	-		Psyr_3269	0.29	+1.6
3,915,116	-		Psyr_3269	0.29	-2.1