Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3202

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3201 and Psyr_3202 are separated by 136 nucleotidesPsyr_3202 and Psyr_3203 overlap by 4 nucleotides Psyr_3201: Psyr_3201 - NADH dehydrogenase subunit F, at 3,831,157 to 3,832,515 _3201 Psyr_3202: Psyr_3202 - NADH dehydrogenase subunit G, at 3,832,652 to 3,835,369 _3202 Psyr_3203: Psyr_3203 - NADH dehydrogenase subunit H, at 3,835,366 to 3,836,373 _3203 Position (kb) 3832 3833 3834 3835 3836Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3832.513 kb on + strandat 3832.557 kb on + strandat 3832.557 kb on + strandat 3832.557 kb on + strandat 3833.124 kb on + strand, within Psyr_3202at 3833.125 kb on - strand, within Psyr_3202at 3833.190 kb on - strand, within Psyr_3202at 3833.266 kb on - strand, within Psyr_3202at 3833.619 kb on - strand, within Psyr_3202at 3833.655 kb on - strand, within Psyr_3202at 3833.982 kb on + strand, within Psyr_3202at 3835.158 kb on - strandat 3835.158 kb on - strandat 3835.745 kb on + strand, within Psyr_3203at 3836.093 kb on - strand, within Psyr_3203

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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3,832,513 + +1.6
3,832,557 + -2.9
3,832,557 + -0.3
3,832,557 + +4.0
3,833,124 + Psyr_3202 0.17 -1.0
3,833,125 - Psyr_3202 0.17 -0.5
3,833,190 - Psyr_3202 0.20 -1.3
3,833,266 - Psyr_3202 0.23 -1.5
3,833,619 - Psyr_3202 0.36 -1.0
3,833,655 - Psyr_3202 0.37 -1.3
3,833,982 + Psyr_3202 0.49 +1.0
3,835,158 - -2.7
3,835,158 - -0.5
3,835,745 + Psyr_3203 0.38 -1.3
3,836,093 - Psyr_3203 0.72 +0.0

Or see this region's nucleotide sequence