Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2780 and Psyr_2781 are separated by 10 nucleotides Psyr_2781 and Psyr_2782 are separated by 62 nucleotides Psyr_2782 and Psyr_2783 are separated by 3 nucleotides
Psyr_2780: Psyr_2780 - Phage tail tape measure protein lambda, at 3,364,992 to 3,368,477
_2780
Psyr_2781: Psyr_2781 - hypothetical protein, at 3,368,488 to 3,368,736
_2781
Psyr_2782: Psyr_2782 - hypothetical protein, at 3,368,799 to 3,369,182
_2782
Psyr_2783: Psyr_2783 - conserved hypothetical protein, at 3,369,186 to 3,369,842
_2783
Position (kb)
3368
3369 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3367.605 kb on + strand, within Psyr_2780 at 3367.605 kb on + strand, within Psyr_2780 at 3367.605 kb on + strand, within Psyr_2780 at 3367.605 kb on + strand, within Psyr_2780 at 3367.606 kb on - strand, within Psyr_2780 at 3367.606 kb on - strand, within Psyr_2780 at 3367.606 kb on - strand, within Psyr_2780 at 3367.647 kb on + strand, within Psyr_2780 at 3367.727 kb on + strand, within Psyr_2780 at 3367.728 kb on - strand, within Psyr_2780 at 3367.728 kb on - strand, within Psyr_2780 at 3367.728 kb on - strand, within Psyr_2780 at 3367.767 kb on + strand, within Psyr_2780 at 3367.767 kb on + strand, within Psyr_2780 at 3367.767 kb on + strand, within Psyr_2780 at 3367.767 kb on + strand, within Psyr_2780 at 3367.768 kb on - strand, within Psyr_2780 at 3367.768 kb on - strand, within Psyr_2780 at 3367.768 kb on - strand, within Psyr_2780 at 3367.768 kb on - strand, within Psyr_2780 at 3367.768 kb on - strand, within Psyr_2780 at 3367.768 kb on - strand, within Psyr_2780 at 3367.768 kb on - strand, within Psyr_2780 at 3367.922 kb on + strand, within Psyr_2780 at 3367.951 kb on + strand, within Psyr_2780 at 3368.003 kb on + strand, within Psyr_2780 at 3368.003 kb on + strand, within Psyr_2780 at 3368.003 kb on + strand, within Psyr_2780 at 3368.003 kb on + strand, within Psyr_2780 at 3368.004 kb on - strand, within Psyr_2780 at 3368.210 kb on + strand at 3368.210 kb on + strand at 3368.211 kb on - strand at 3368.557 kb on + strand, within Psyr_2781 at 3368.557 kb on + strand, within Psyr_2781 at 3368.558 kb on - strand, within Psyr_2781 at 3368.609 kb on + strand, within Psyr_2781 at 3368.610 kb on - strand, within Psyr_2781 at 3368.777 kb on + strand at 3368.777 kb on + strand at 3368.837 kb on - strand at 3368.980 kb on - strand, within Psyr_2782 at 3369.039 kb on - strand, within Psyr_2782 at 3369.039 kb on - strand, within Psyr_2782 at 3369.080 kb on + strand, within Psyr_2782 at 3369.080 kb on + strand, within Psyr_2782 at 3369.082 kb on + strand, within Psyr_2782 at 3369.082 kb on + strand, within Psyr_2782 at 3369.082 kb on + strand, within Psyr_2782 at 3369.082 kb on + strand, within Psyr_2782 at 3369.082 kb on + strand, within Psyr_2782 at 3369.082 kb on + strand, within Psyr_2782 at 3369.082 kb on + strand, within Psyr_2782 at 3369.082 kb on + strand, within Psyr_2782 at 3369.082 kb on + strand, within Psyr_2782 at 3369.082 kb on + strand, within Psyr_2782 at 3369.082 kb on + strand, within Psyr_2782 at 3369.082 kb on + strand, within Psyr_2782 at 3369.083 kb on - strand, within Psyr_2782 at 3369.083 kb on - strand, within Psyr_2782 at 3369.083 kb on - strand, within Psyr_2782 at 3369.083 kb on - strand, within Psyr_2782 at 3369.083 kb on - strand, within Psyr_2782 at 3369.083 kb on - strand, within Psyr_2782 at 3369.083 kb on - strand, within Psyr_2782 at 3369.295 kb on + strand, within Psyr_2783 at 3369.296 kb on - strand, within Psyr_2783 at 3369.304 kb on + strand, within Psyr_2783 at 3369.304 kb on + strand, within Psyr_2783 at 3369.305 kb on - strand, within Psyr_2783 at 3369.388 kb on + strand, within Psyr_2783 at 3369.388 kb on + strand, within Psyr_2783 at 3369.388 kb on + strand, within Psyr_2783 at 3369.389 kb on - strand, within Psyr_2783 at 3369.389 kb on - strand, within Psyr_2783 at 3369.389 kb on - strand, within Psyr_2783 at 3369.389 kb on - strand, within Psyr_2783
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 3,367,605 + Psyr_2780 0.75 +0.6 3,367,605 + Psyr_2780 0.75 -0.4 3,367,605 + Psyr_2780 0.75 -1.2 3,367,605 + Psyr_2780 0.75 +2.3 3,367,606 - Psyr_2780 0.75 -1.0 3,367,606 - Psyr_2780 0.75 -0.8 3,367,606 - Psyr_2780 0.75 +1.0 3,367,647 + Psyr_2780 0.76 +0.5 3,367,727 + Psyr_2780 0.78 +2.9 3,367,728 - Psyr_2780 0.78 +0.5 3,367,728 - Psyr_2780 0.78 -2.4 3,367,728 - Psyr_2780 0.78 -0.8 3,367,767 + Psyr_2780 0.80 +2.1 3,367,767 + Psyr_2780 0.80 -0.0 3,367,767 + Psyr_2780 0.80 +0.1 3,367,767 + Psyr_2780 0.80 +0.5 3,367,768 - Psyr_2780 0.80 +0.3 3,367,768 - Psyr_2780 0.80 +0.0 3,367,768 - Psyr_2780 0.80 +0.4 3,367,768 - Psyr_2780 0.80 -1.6 3,367,768 - Psyr_2780 0.80 +1.0 3,367,768 - Psyr_2780 0.80 +1.2 3,367,768 - Psyr_2780 0.80 +3.3 3,367,922 + Psyr_2780 0.84 -0.4 3,367,951 + Psyr_2780 0.85 -0.3 3,368,003 + Psyr_2780 0.86 +1.1 3,368,003 + Psyr_2780 0.86 +1.5 3,368,003 + Psyr_2780 0.86 -0.3 3,368,003 + Psyr_2780 0.86 -0.8 3,368,004 - Psyr_2780 0.86 -0.7 3,368,210 + -0.8 3,368,210 + -1.0 3,368,211 - +0.2 3,368,557 + Psyr_2781 0.28 -0.8 3,368,557 + Psyr_2781 0.28 -1.0 3,368,558 - Psyr_2781 0.28 -0.2 3,368,609 + Psyr_2781 0.49 -0.4 3,368,610 - Psyr_2781 0.49 -0.8 3,368,777 + +0.0 3,368,777 + +2.2 3,368,837 - +1.0 3,368,980 - Psyr_2782 0.47 -0.0 3,369,039 - Psyr_2782 0.62 +0.8 3,369,039 - Psyr_2782 0.62 +0.3 3,369,080 + Psyr_2782 0.73 -0.2 3,369,080 + Psyr_2782 0.73 -3.5 3,369,082 + Psyr_2782 0.74 +1.0 3,369,082 + Psyr_2782 0.74 +1.0 3,369,082 + Psyr_2782 0.74 -1.8 3,369,082 + Psyr_2782 0.74 -1.5 3,369,082 + Psyr_2782 0.74 -0.6 3,369,082 + Psyr_2782 0.74 -1.2 3,369,082 + Psyr_2782 0.74 -1.8 3,369,082 + Psyr_2782 0.74 -0.8 3,369,082 + Psyr_2782 0.74 +1.4 3,369,082 + Psyr_2782 0.74 -0.3 3,369,082 + Psyr_2782 0.74 +0.2 3,369,082 + Psyr_2782 0.74 +0.9 3,369,083 - Psyr_2782 0.74 -0.9 3,369,083 - Psyr_2782 0.74 -0.6 3,369,083 - Psyr_2782 0.74 -0.2 3,369,083 - Psyr_2782 0.74 +0.2 3,369,083 - Psyr_2782 0.74 -3.2 3,369,083 - Psyr_2782 0.74 +1.9 3,369,083 - Psyr_2782 0.74 +0.8 3,369,295 + Psyr_2783 0.17 -0.0 3,369,296 - Psyr_2783 0.17 -0.8 3,369,304 + Psyr_2783 0.18 +1.3 3,369,304 + Psyr_2783 0.18 +1.6 3,369,305 - Psyr_2783 0.18 -1.2 3,369,388 + Psyr_2783 0.31 +0.1 3,369,388 + Psyr_2783 0.31 +0.1 3,369,388 + Psyr_2783 0.31 +0.1 3,369,389 - Psyr_2783 0.31 +0.3 3,369,389 - Psyr_2783 0.31 -0.7 3,369,389 - Psyr_2783 0.31 -0.5 3,369,389 - Psyr_2783 0.31 +0.7
Or see this region's nucleotide sequence