Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2412

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
2,792,430	+				-0.1
2,792,521	-		Psyr_2411	0.12	-0.2
2,792,521	-		Psyr_2411	0.12	+0.5
2,792,521	-		Psyr_2411	0.12	+0.9
2,792,638	-		Psyr_2411	0.26	+0.8
2,792,638	-		Psyr_2411	0.26	-2.5
2,792,918	+		Psyr_2411	0.58	-0.8
2,792,919	-		Psyr_2411	0.58	+0.1
2,792,945	+		Psyr_2411	0.61	-1.4
2,793,198	+				+1.7
2,793,198	+				-1.2
2,793,198	+				-1.2
2,793,198	+				-0.7
2,793,198	+				-1.4
2,793,198	+				+1.9
2,793,198	+				+0.4
2,793,198	+				-0.1
2,793,198	+				-0.7
2,793,199	-				+0.6
2,793,199	-				+1.1
2,793,199	-				-3.1
2,793,199	-				+0.1
2,793,199	-				+0.7
2,793,199	-				-1.1
2,793,199	-				+0.6
2,793,199	-				+0.4
2,793,229	-				-0.9
2,793,276	+				-0.9
2,793,277	-				+1.3
2,793,277	-				+1.1
2,793,296	-				+0.1
2,793,354	+				+0.1
2,793,355	-				+0.5
2,793,355	-				-1.6
2,793,355	-				+1.8
2,793,388	-				-0.7
2,793,388	-				-1.7
2,793,388	-				-0.9
2,793,404	+				-1.1
2,793,572	+				-0.1
2,793,572	+				+0.9
2,793,573	-				-0.1
2,793,573	-				+1.7
2,793,573	-				+4.8
2,793,573	-				-0.9
2,793,573	-				+0.9
2,793,574	+				-0.7
2,793,574	+				+1.2
2,793,574	+				-1.9
2,793,574	+				-0.7
2,793,574	+				-0.0
2,793,574	+				-0.9
2,793,574	+				-0.4
2,793,574	+				-0.7
2,793,574	+				-1.6
2,793,574	+				-0.1
2,793,574	+				-0.9
2,793,575	-				-0.7
2,793,575	-				-0.5
2,793,575	-				+0.3
2,793,575	-				+0.7
2,793,575	-				-0.4
2,793,575	-				-0.4
2,793,576	+				+1.1
2,793,576	+				+0.2
2,793,576	+				-1.9
2,793,576	+				+0.9
2,793,576	+				-0.5
2,793,576	+				-0.8
2,793,576	+				-0.4
2,793,576	+				-0.7
2,793,576	+				-1.2
2,793,576	+				+0.2
2,793,576	+				+0.0
2,793,576	+				+0.9
2,793,576	+				+0.9
2,793,577	-				-1.9
2,793,577	-				+1.2
2,793,577	-				-1.4
2,793,577	-				+1.3
2,793,577	-				-0.5
2,793,577	-				-2.7
2,793,577	-				+0.3
2,793,577	-				-0.1
2,793,577	-				+0.3
2,793,577	-				-1.2
2,793,577	-				+3.5
2,793,577	-				+0.2
2,793,577	-				-0.5
2,793,717	+		Psyr_2412	0.12	-0.8
2,793,718	-		Psyr_2412	0.12	+0.7
2,793,734	-		Psyr_2412	0.13	-0.8
2,793,734	-		Psyr_2412	0.13	+0.0
2,793,763	+		Psyr_2412	0.14	+0.5
2,793,763	+		Psyr_2412	0.14	-0.2
2,793,792	+		Psyr_2412	0.15	-0.3
2,793,792	+		Psyr_2412	0.15	-0.9
2,793,792	+		Psyr_2412	0.15	+0.7
2,793,792	+		Psyr_2412	0.15	-0.1
2,793,792	+		Psyr_2412	0.15	+0.2
2,793,793	-		Psyr_2412	0.15	-0.1
2,793,793	-		Psyr_2412	0.15	-1.2
2,793,793	-		Psyr_2412	0.15	-2.2
2,793,793	-		Psyr_2412	0.15	-1.4
2,793,793	-		Psyr_2412	0.15	-0.7
2,794,037	+		Psyr_2412	0.23	+2.1
2,794,037	+		Psyr_2412	0.23	-1.1
2,794,038	-		Psyr_2412	0.24	-0.7
2,794,116	+		Psyr_2412	0.26	-1.7
2,794,117	-		Psyr_2412	0.26	+0.9
2,794,188	+		Psyr_2412	0.29	+0.0
2,794,329	+		Psyr_2412	0.34	-1.9
2,794,330	-		Psyr_2412	0.34	-1.7
2,794,332	+		Psyr_2412	0.34	-0.2
2,794,332	+		Psyr_2412	0.34	-0.7
2,794,378	+		Psyr_2412	0.36	-0.1
2,794,378	+		Psyr_2412	0.36	-0.2
2,794,378	+		Psyr_2412	0.36	-0.1
2,794,379	-		Psyr_2412	0.36	+3.4
2,794,379	-		Psyr_2412	0.36	-2.5
2,794,379	-		Psyr_2412	0.36	+0.4
2,794,380	+		Psyr_2412	0.36	-0.5
2,794,396	+		Psyr_2412	0.36	+0.6
2,794,396	+		Psyr_2412	0.36	+0.1
2,794,420	+		Psyr_2412	0.37	-2.4
2,794,421	-		Psyr_2412	0.37	-0.2
2,794,438	-		Psyr_2412	0.38	+0.8
2,794,571	+		Psyr_2412	0.43	-1.8
2,794,740	+		Psyr_2412	0.49	-0.2
2,794,741	-		Psyr_2412	0.49	+0.5
2,794,741	-		Psyr_2412	0.49	+1.2
2,794,801	+		Psyr_2412	0.51	-0.6
2,795,007	+		Psyr_2412	0.58	-1.5
2,795,127	+		Psyr_2412	0.63	-1.1
2,795,127	+		Psyr_2412	0.63	+0.3
2,795,140	-		Psyr_2412	0.63	-0.1
2,795,145	+		Psyr_2412	0.63	-0.5
2,795,146	-		Psyr_2412	0.63	+0.3
2,795,146	-		Psyr_2412	0.63	-1.2
2,795,146	-		Psyr_2412	0.63	-0.6
2,795,182	-		Psyr_2412	0.65	-0.3
2,795,210	-		Psyr_2412	0.66	+1.1
2,795,210	-		Psyr_2412	0.66	+0.1
2,795,235	+		Psyr_2412	0.67	+3.7
2,795,236	-		Psyr_2412	0.67	+0.9
2,795,241	+		Psyr_2412	0.67	-0.1
2,795,241	+		Psyr_2412	0.67	-0.6
2,795,241	+		Psyr_2412	0.67	+0.6
2,795,241	+		Psyr_2412	0.67	+0.8
2,795,242	-		Psyr_2412	0.67	-0.8
2,795,242	-		Psyr_2412	0.67	-0.7
2,795,333	-		Psyr_2412	0.70	-0.7
2,795,360	+		Psyr_2412	0.71	-0.3
2,795,443	+		Psyr_2412	0.74	-1.1
2,795,536	+		Psyr_2412	0.78	-0.7
2,795,537	-		Psyr_2412	0.78	-0.0
2,795,699	+		Psyr_2412	0.83	-0.7
2,795,699	+		Psyr_2412	0.83	-0.7
2,795,699	+		Psyr_2412	0.83	-1.1
2,795,700	-		Psyr_2412	0.83	-0.8
2,795,700	-		Psyr_2412	0.83	+0.8
2,795,808	+		Psyr_2412	0.87	-0.1
2,795,941	+				+1.0
2,795,942	-				-0.4
2,795,942	-				+0.1
2,795,942	-				-3.0
2,795,947	+				-0.5
2,795,947	+				-0.5
2,795,948	-				+1.3
2,795,948	-				+0.3
2,796,029	+				-0.3
2,796,124	+				-0.7
2,796,124	+				-0.1
2,796,125	-				-1.1
2,796,199	+				+0.6
2,796,199	+				-2.4
2,796,199	+				+0.1
2,796,200	-				-1.4
2,796,209	-				+0.3
2,796,216	+				+2.1
2,796,216	+				-0.8
2,796,216	+				-0.9
2,796,217	-				+0.0
2,796,217	-				-0.4
2,796,392	+				+0.9
2,796,393	-				+0.6
2,796,411	+				-0.2
2,796,411	+				-1.1
2,796,412	-				-2.2
2,796,412	-				-0.9
2,796,421	+				+1.3
2,796,421	+				+0.2
2,796,422	-				-0.7
2,796,422	-				-0.3
2,796,429	+				-1.7
2,796,429	+				+2.5
2,796,429	+				+2.7
2,796,429	+				+2.5
2,796,429	+				+0.6
2,796,429	+				-0.4
2,796,430	-				-0.1
2,796,430	-				-0.9
2,796,430	-				+2.2
2,796,430	-				+0.1
2,796,430	-				+1.9
2,796,430	-				-1.5
2,796,432	-				-0.8
2,796,597	+		Psyr_2413	0.13	-0.3
2,796,598	-		Psyr_2413	0.13	+0.3
2,796,768	+		Psyr_2413	0.25	-1.9