Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2040

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
2,368,234	+				+0.3
2,368,262	-				+1.0
2,368,271	+				-1.3
2,368,296	+				-0.7
2,368,296	+				-0.1
2,368,296	+				+3.1
2,368,297	-				+0.2
2,368,297	-				+0.2
2,368,322	+				-0.2
2,368,322	+				-0.3
2,368,322	+				+1.6
2,368,322	+				+0.1
2,368,322	+				+0.6
2,368,323	-				+1.7
2,368,323	-				+0.4
2,368,323	-				-1.2
2,368,323	-				+2.0
2,368,323	-				+2.1
2,368,371	+		Psyr_2039	0.13	-0.1
2,368,375	-		Psyr_2039	0.14	+0.3
2,368,420	-		Psyr_2039	0.22	+0.5
2,368,725	-		Psyr_2039	0.77	-0.8
2,368,816	+				+1.0
2,368,870	+				-0.4
2,368,887	+				+0.6
2,368,887	+				-0.1
2,368,899	+				+0.7
2,368,899	+				-1.3
2,368,903	+				+2.8
2,368,969	+				+1.0
2,369,018	+				+0.0
2,369,019	-				+0.4
2,369,038	+				-1.0
2,369,059	+				+0.6
2,369,130	-				-1.2
2,369,209	+				+2.7
2,369,227	+				-0.6
2,369,227	+				-0.6
2,369,227	+				+0.6
2,369,227	+				-1.8
2,369,227	+				+0.9
2,369,227	+				+0.2
2,369,227	+				+0.2
2,369,228	-				+0.3
2,369,228	-				+1.3
2,369,228	-				+2.0
2,369,228	-				+0.7
2,369,228	-				-0.1
2,369,228	-				+0.6
2,369,228	-				+0.0
2,369,228	-				+0.0
2,369,231	+				+1.0
2,369,231	+				-1.6
2,369,231	+				+2.3
2,369,232	-				+0.4
2,369,232	-				+0.3
2,369,232	-				-1.1
2,369,269	-				-1.1
2,369,269	-				-1.4
2,369,390	+				-0.7
2,369,390	+				+3.5
2,369,390	+				+0.9
2,369,390	+				-0.1
2,369,391	-				-0.2
2,369,391	-				-0.7
2,369,391	-				+1.2
2,369,460	-				-0.2
2,369,632	-				+1.2
2,369,647	+				+3.4
2,369,657	-				+0.8
2,369,701	+				+0.3
2,369,701	+				+0.8
2,369,701	+				+3.3
2,369,701	+				-1.9
2,369,701	+				+0.5
2,369,701	+				-0.6
2,369,702	-				-0.2
2,369,702	-				-0.6
2,369,702	-				+2.7
2,369,702	-				+0.3
2,369,702	-				+0.8
2,369,702	-				-0.5
2,369,705	+				+1.3
2,369,705	+				-0.1
2,369,705	+				-0.4
2,369,705	+				+0.2
2,369,706	-				-0.5
2,369,706	-				-0.6
2,369,706	-				-0.6
2,369,706	-				-1.3
2,369,880	+		Psyr_2040	0.13	-1.6
2,369,880	+		Psyr_2040	0.13	+0.5
2,369,880	+		Psyr_2040	0.13	+1.4
2,369,881	-		Psyr_2040	0.13	-1.6
2,369,910	+		Psyr_2040	0.14	+0.4
2,369,941	-		Psyr_2040	0.14	+0.1
2,370,034	+		Psyr_2040	0.16	-1.3
2,370,034	+		Psyr_2040	0.16	+0.4
2,370,035	-		Psyr_2040	0.16	-0.6
2,370,112	+		Psyr_2040	0.18	-0.6
2,370,112	+		Psyr_2040	0.18	-0.7
2,370,113	-		Psyr_2040	0.18	+1.0
2,370,140	-		Psyr_2040	0.18	-1.0
2,370,162	+		Psyr_2040	0.19	-0.3
2,370,162	+		Psyr_2040	0.19	+0.7
2,370,162	+		Psyr_2040	0.19	+1.8
2,370,221	-		Psyr_2040	0.20	+1.3
2,370,229	+		Psyr_2040	0.20	+1.3
2,370,352	-		Psyr_2040	0.23	+1.8
2,370,352	-				-1.0
2,370,352	-		Psyr_2040	0.23	-2.3
2,370,355	+		Psyr_2040	0.23	-0.3
2,370,356	-		Psyr_2040	0.23	+1.4
2,370,356	-		Psyr_2040	0.23	+0.4
2,370,356	-		Psyr_2040	0.23	+0.7
2,370,368	+				-1.8
2,370,368	+		Psyr_2040	0.23	+0.0
2,370,369	-		Psyr_2040	0.23	+0.2
2,370,424	-		Psyr_2040	0.24	+1.3
2,370,481	+		Psyr_2040	0.25	-0.3
2,370,481	+		Psyr_2040	0.25	+0.4
2,370,481	+		Psyr_2040	0.25	+1.9
2,370,481	+		Psyr_2040	0.25	-0.4
2,370,481	+		Psyr_2040	0.25	+1.4
2,370,481	+		Psyr_2040	0.25	+2.3
2,370,482	-		Psyr_2040	0.25	+0.9
2,370,482	-		Psyr_2040	0.25	+0.5
2,370,482	-		Psyr_2040	0.25	+0.4
2,370,482	-		Psyr_2040	0.25	+1.0
2,370,482	-		Psyr_2040	0.25	-0.6
2,370,541	+		Psyr_2040	0.26	+0.6
2,370,544	+		Psyr_2040	0.26	-0.2
2,370,544	+		Psyr_2040	0.26	+0.4
2,370,544	+		Psyr_2040	0.26	+2.8
2,370,631	+		Psyr_2040	0.28	-2.0
2,370,631	+		Psyr_2040	0.28	+1.2
2,370,631	+		Psyr_2040	0.28	-0.2
2,370,632	-		Psyr_2040	0.28	+0.0
2,370,832	+		Psyr_2040	0.32	+0.2
2,370,832	+		Psyr_2040	0.32	-0.3
2,370,833	-		Psyr_2040	0.32	+0.9
2,370,833	-		Psyr_2040	0.32	+1.3
2,370,866	-		Psyr_2040	0.33	+0.1
2,370,956	+		Psyr_2040	0.35	-0.6
2,370,956	+		Psyr_2040	0.35	+0.6
2,370,956	+		Psyr_2040	0.35	-0.1
2,371,015	+		Psyr_2040	0.36	-0.8
2,371,015	+		Psyr_2040	0.36	-0.6
2,371,016	-		Psyr_2040	0.36	+0.1
2,371,016	-		Psyr_2040	0.36	-0.6
2,371,016	-		Psyr_2040	0.36	+1.7
2,371,016	-		Psyr_2040	0.36	-0.3
2,371,093	+		Psyr_2040	0.37	+0.5
2,371,255	+		Psyr_2040	0.40	+0.9
2,371,256	-		Psyr_2040	0.41	+1.0
2,371,311	+		Psyr_2040	0.42	-2.7
2,371,311	+		Psyr_2040	0.42	-2.4
2,371,312	-		Psyr_2040	0.42	-0.6
2,371,312	-		Psyr_2040	0.42	-2.0
2,371,312	-		Psyr_2040	0.42	-0.6
2,371,355	-		Psyr_2040	0.42	+1.6
2,371,355	-		Psyr_2040	0.42	-1.4
2,371,360	+		Psyr_2040	0.43	-0.1
2,371,418	-		Psyr_2040	0.44	+1.9
2,371,483	+		Psyr_2040	0.45	+0.2
2,371,483	+		Psyr_2040	0.45	+1.2
2,371,484	-		Psyr_2040	0.45	-0.9
2,371,484	-		Psyr_2040	0.45	+0.1
2,371,484	-		Psyr_2040	0.45	-2.3
2,371,484	-		Psyr_2040	0.45	-0.3
2,371,484	-		Psyr_2040	0.45	-0.2
2,371,490	-		Psyr_2040	0.45	+0.5
2,371,490	-		Psyr_2040	0.45	+0.2
2,371,549	+		Psyr_2040	0.46	-1.0
2,371,550	-		Psyr_2040	0.46	+0.4
2,371,555	+		Psyr_2040	0.46	+1.8
2,371,638	-		Psyr_2040	0.48	-1.0
2,371,699	+		Psyr_2040	0.49	+0.3
2,371,700	-		Psyr_2040	0.49	-0.4
2,371,700	-				-2.1
2,371,762	+		Psyr_2040	0.51	+0.5
2,371,762	+		Psyr_2040	0.51	+0.4
2,371,994	+		Psyr_2040	0.55	-1.6
2,371,994	+		Psyr_2040	0.55	-1.5
2,371,994	+		Psyr_2040	0.55	+0.5
2,371,995	-		Psyr_2040	0.55	-0.1
2,372,021	-		Psyr_2040	0.56	-2.0
2,372,023	+		Psyr_2040	0.56	-2.8
2,372,054	+		Psyr_2040	0.56	+1.0
2,372,054	+		Psyr_2040	0.56	+0.0
2,372,083	+		Psyr_2040	0.57	+0.6
2,372,089	+		Psyr_2040	0.57	-1.0
2,372,090	-		Psyr_2040	0.57	-0.2
2,372,170	+		Psyr_2040	0.59	+1.0
2,372,170	+		Psyr_2040	0.59	+0.0
2,372,170	+		Psyr_2040	0.59	-0.1
2,372,170	+		Psyr_2040	0.59	-1.2
2,372,170	+		Psyr_2040	0.59	+5.0
2,372,171	-		Psyr_2040	0.59	-0.1
2,372,171	-		Psyr_2040	0.59	+0.7
2,372,171	-		Psyr_2040	0.59	+2.1
2,372,338	+		Psyr_2040	0.62	-0.6
2,372,338	+		Psyr_2040	0.62	+0.1
2,372,339	-		Psyr_2040	0.62	+2.1
2,372,339	-		Psyr_2040	0.62	-0.2
2,372,339	-		Psyr_2040	0.62	-0.5
2,372,413	+		Psyr_2040	0.63	+1.0
2,372,413	+		Psyr_2040	0.63	-0.8
2,372,414	-		Psyr_2040	0.63	-0.2
2,372,493	+		Psyr_2040	0.65	-0.6
2,372,529	+		Psyr_2040	0.66	+0.4
2,372,529	+				+0.4
2,372,529	+		Psyr_2040	0.66	-1.8
2,372,530	-		Psyr_2040	0.66	+1.0
2,372,530	-		Psyr_2040	0.66	+0.6
2,372,538	+		Psyr_2040	0.66	-0.6
2,372,575	+		Psyr_2040	0.67	-1.5
2,372,575	+		Psyr_2040	0.67	-0.3
2,372,581	+		Psyr_2040	0.67	+2.0
2,372,618	+		Psyr_2040	0.67	+1.4
2,372,668	+		Psyr_2040	0.68	+1.5
2,372,668	+		Psyr_2040	0.68	-1.0
2,372,669	-		Psyr_2040	0.68	+0.0
2,372,669	-		Psyr_2040	0.68	-0.1
2,372,694	+		Psyr_2040	0.69	-1.6
2,372,694	+		Psyr_2040	0.69	-0.1
2,372,695	-		Psyr_2040	0.69	-2.4
2,372,986	+		Psyr_2040	0.75	+1.3
2,372,986	+		Psyr_2040	0.75	+0.6
2,372,986	+		Psyr_2040	0.75	-0.8
2,372,986	+		Psyr_2040	0.75	+0.7
2,372,986	+		Psyr_2040	0.75	-0.2
2,372,986	+		Psyr_2040	0.75	-0.4
2,372,987	-		Psyr_2040	0.75	-1.0
2,372,987	-		Psyr_2040	0.75	+0.0
2,372,987	-		Psyr_2040	0.75	+1.6
2,372,987	-		Psyr_2040	0.75	+0.6
2,373,091	+		Psyr_2040	0.77	+0.0
2,373,092	-		Psyr_2040	0.77	-1.1
2,373,092	-		Psyr_2040	0.77	-0.2
2,373,116	-		Psyr_2040	0.77	-0.0
2,373,116	-		Psyr_2040	0.77	-1.3
2,373,198	+		Psyr_2040	0.79	+0.7
2,373,198	+		Psyr_2040	0.79	+0.6
2,373,247	+		Psyr_2040	0.80	+1.0
2,373,247	+		Psyr_2040	0.80	-0.4
2,373,247	+		Psyr_2040	0.80	-0.6
2,373,247	+		Psyr_2040	0.80	-1.3
2,373,247	+		Psyr_2040	0.80	-0.1
2,373,247	+		Psyr_2040	0.80	+0.2
2,373,247	+		Psyr_2040	0.80	-0.7
2,373,247	+		Psyr_2040	0.80	-0.6
2,373,247	+		Psyr_2040	0.80	-2.1
2,373,247	+		Psyr_2040	0.80	+1.6
2,373,247	+		Psyr_2040	0.80	-0.1
2,373,247	+		Psyr_2040	0.80	+0.4
2,373,247	+		Psyr_2040	0.80	-2.0
2,373,247	+		Psyr_2040	0.80	-0.6
2,373,247	+		Psyr_2040	0.80	-0.2
2,373,247	+		Psyr_2040	0.80	+0.7
2,373,247	+		Psyr_2040	0.80	+0.9
2,373,248	-		Psyr_2040	0.80	-1.3
2,373,248	-		Psyr_2040	0.80	+1.0
2,373,248	-		Psyr_2040	0.80	-0.1
2,373,248	-		Psyr_2040	0.80	-0.3
2,373,248	-		Psyr_2040	0.80	-1.6
2,373,248	-		Psyr_2040	0.80	-0.9
2,373,248	-		Psyr_2040	0.80	-0.2
2,373,248	-		Psyr_2040	0.80	+1.0
2,373,248	-		Psyr_2040	0.80	-0.7
2,373,248	-		Psyr_2040	0.80	-1.1
2,373,248	-		Psyr_2040	0.80	+0.4
2,373,248	-		Psyr_2040	0.80	+0.6
2,373,248	-		Psyr_2040	0.80	+0.2
2,373,248	-		Psyr_2040	0.80	+0.2
2,373,248	-		Psyr_2040	0.80	+4.0
2,373,248	-		Psyr_2040	0.80	+1.5
2,373,248	-		Psyr_2040	0.80	-0.6
2,373,248	-		Psyr_2040	0.80	-0.6
2,373,254	-		Psyr_2040	0.80	-1.6
2,373,254	-		Psyr_2040	0.80	+1.3
2,373,265	+		Psyr_2040	0.80	+0.3
2,373,266	-		Psyr_2040	0.80	+1.8
2,373,269	+		Psyr_2040	0.80	+0.3
2,373,270	-		Psyr_2040	0.80	-1.1
2,373,355	+		Psyr_2040	0.82	-0.6
2,373,355	+		Psyr_2040	0.82	+1.0
2,373,355	+		Psyr_2040	0.82	+1.0
2,373,355	+		Psyr_2040	0.82	+0.7
2,373,355	+		Psyr_2040	0.82	-0.0
2,373,355	+		Psyr_2040	0.82	-2.3
2,373,356	-		Psyr_2040	0.82	+0.0
2,373,356	-		Psyr_2040	0.82	-1.3
2,373,356	-		Psyr_2040	0.82	-0.1
2,373,356	-		Psyr_2040	0.82	+0.4
2,373,356	-		Psyr_2040	0.82	-0.7
2,373,356	-		Psyr_2040	0.82	-1.0
2,373,359	+		Psyr_2040	0.82	+0.4
2,373,359	+		Psyr_2040	0.82	-1.6
2,373,359	+		Psyr_2040	0.82	-0.7
2,373,359	+		Psyr_2040	0.82	-0.7
2,373,359	+		Psyr_2040	0.82	-1.8
2,373,359	+		Psyr_2040	0.82	+1.0
2,373,360	-		Psyr_2040	0.82	+1.8
2,373,360	-		Psyr_2040	0.82	+0.2
2,373,360	-		Psyr_2040	0.82	-1.2
2,373,362	-		Psyr_2040	0.82	-1.2
2,373,472	+		Psyr_2040	0.84	+0.8
2,373,475	+		Psyr_2040	0.84	+1.2
2,373,475	+		Psyr_2040	0.84	-0.6
2,373,476	-		Psyr_2040	0.84	-0.3
2,373,523	-		Psyr_2040	0.85	+0.0
2,373,754	+		Psyr_2040	0.90	-3.1
2,373,754	+		Psyr_2040	0.90	+0.6
2,373,755	-				-1.0
2,373,755	-				-2.6
2,373,755	-				+0.8
2,373,755	-				-0.3
2,373,919	+				-1.0
2,373,919	+				-0.4
2,374,036	+				+2.0
2,374,037	-				+0.8
2,374,100	-				-1.2
2,374,174	+				+0.3
2,374,174	+				-0.7
2,374,174	+				-0.4
2,374,175	-				-1.1
2,374,175	-				-2.6
2,374,175	-				+2.5
2,374,175	-				+0.0
2,374,175	-				-1.4
2,374,175	-				+0.3
2,374,247	+				-0.2
2,374,247	+				-0.4
2,374,248	-				+0.6
2,374,248	-				+0.7
2,374,397	+				-0.4
2,374,423	+				+4.5
2,374,423	+				-0.1
2,374,424	-				+0.7
2,374,424	-				+2.6
2,374,424	-				-0.6
2,374,424	-				-0.4
2,374,430	-				-0.9
2,374,505	-				-0.3
2,374,505	-				+0.5
2,374,596	+				+0.1
2,374,597	-				+0.3
2,374,597	-				+1.3
2,374,655	+				-1.9
2,374,722	+				-1.4
2,374,722	+				+0.5
2,374,723	-				+0.6
2,374,723	-				-0.1
2,374,723	-				+1.4
2,374,784	+				+0.9
2,374,825	-				+0.0
2,374,825	-				-0.2
2,374,830	+				+1.0
2,374,831	-				-0.1
2,374,831	-				+0.1
2,374,831	-				+1.8
2,374,875	+				-0.8
2,374,875	+				+2.0
2,374,875	+				-1.3
2,374,875	+				-0.8
2,374,876	-				+1.0
2,374,876	-				+2.0
2,374,876	-				+2.1
2,374,876	-				-2.6