Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2037

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
2,364,044	+		Psyr_2036	0.28	+0.5
2,364,044	+		Psyr_2036	0.28	-0.2
2,364,044	+		Psyr_2036	0.28	-3.0
2,364,045	-		Psyr_2036	0.28	-0.3
2,364,045	-		Psyr_2036	0.28	+1.4
2,364,045	-		Psyr_2036	0.28	+1.8
2,364,191	-		Psyr_2036	0.41	-0.7
2,364,314	+		Psyr_2036	0.52	-1.0
2,364,314	+		Psyr_2036	0.52	-0.1
2,364,314	+		Psyr_2036	0.52	+1.2
2,364,314	+		Psyr_2036	0.52	-1.6
2,364,315	-		Psyr_2036	0.52	-0.3
2,364,315	-		Psyr_2036	0.52	-0.2
2,364,315	-		Psyr_2036	0.52	+0.0
2,364,315	-		Psyr_2036	0.52	-0.1
2,364,315	-		Psyr_2036	0.52	+0.3
2,364,400	+		Psyr_2036	0.60	-0.3
2,364,400	+		Psyr_2036	0.60	-1.6
2,364,401	-		Psyr_2036	0.60	-1.8
2,364,452	-		Psyr_2036	0.65	+1.2
2,364,487	+		Psyr_2036	0.68	-0.5
2,364,516	+		Psyr_2036	0.70	-1.9
2,364,517	-		Psyr_2036	0.70	+1.6
2,364,517	-		Psyr_2036	0.70	+0.2
2,364,517	-		Psyr_2036	0.70	-0.3
2,364,592	-		Psyr_2036	0.77	-0.4
2,364,592	-		Psyr_2036	0.77	+0.1
2,364,592	-		Psyr_2036	0.77	+0.3
2,364,683	+		Psyr_2036	0.85	-2.6
2,364,683	+		Psyr_2036	0.85	-1.6
2,364,684	-		Psyr_2036	0.85	-0.3
2,364,684	-		Psyr_2036	0.85	+0.3
2,364,776	+				+0.5
2,364,789	+				+1.0
2,364,790	-				-0.2
2,364,790	-				+0.7
2,364,862	+				-1.1
2,364,862	+				-1.2
2,364,863	-				+1.0
2,364,956	+				+0.5
2,365,343	+		Psyr_2037	0.18	-0.6
2,365,459	+		Psyr_2037	0.23	-1.9
2,365,484	+		Psyr_2037	0.24	+0.4
2,365,485	-		Psyr_2037	0.24	+0.0
2,365,485	-		Psyr_2037	0.24	+0.7
2,365,579	-		Psyr_2037	0.27	+1.3
2,365,770	+		Psyr_2037	0.35	-1.3
2,365,770	+		Psyr_2037	0.35	-2.3
2,365,770	+		Psyr_2037	0.35	+0.4
2,365,770	+		Psyr_2037	0.35	+2.6
2,365,770	+		Psyr_2037	0.35	-0.3
2,365,770	+		Psyr_2037	0.35	-0.3
2,365,770	+		Psyr_2037	0.35	-0.2
2,365,770	+		Psyr_2037	0.35	+0.5
2,365,770	+		Psyr_2037	0.35	-1.7
2,365,770	+		Psyr_2037	0.35	+2.7
2,365,771	-		Psyr_2037	0.35	-0.0
2,365,771	-		Psyr_2037	0.35	-0.5
2,365,771	-		Psyr_2037	0.35	-0.8
2,365,771	-		Psyr_2037	0.35	-1.1
2,365,771	-		Psyr_2037	0.35	-1.0
2,365,771	-		Psyr_2037	0.35	+0.5
2,365,771	-		Psyr_2037	0.35	+0.9
2,365,840	-		Psyr_2037	0.38	-0.4
2,365,840	-		Psyr_2037	0.38	+0.0
2,365,858	+		Psyr_2037	0.38	+0.7
2,365,858	+		Psyr_2037	0.38	+0.8
2,365,858	+		Psyr_2037	0.38	-1.8
2,366,023	+		Psyr_2037	0.45	+1.3
2,366,047	-		Psyr_2037	0.46	+0.6
2,366,182	-		Psyr_2037	0.51	+2.2
2,366,182	-		Psyr_2037	0.51	+0.3
2,366,338	+		Psyr_2037	0.57	-0.6
2,366,438	+		Psyr_2037	0.61	+0.4
2,366,438	+		Psyr_2037	0.61	+0.7
2,366,439	-		Psyr_2037	0.61	+1.8
2,366,439	-		Psyr_2037	0.61	-0.6
2,366,439	-		Psyr_2037	0.61	+0.5
2,366,463	+		Psyr_2037	0.62	+0.8
2,366,463	+		Psyr_2037	0.62	+0.8
2,366,463	+		Psyr_2037	0.62	-0.3
2,366,463	+		Psyr_2037	0.62	+1.1
2,366,463	+		Psyr_2037	0.62	-1.3
2,366,463	+		Psyr_2037	0.62	+0.2
2,366,463	+		Psyr_2037	0.62	+3.0
2,366,463	+		Psyr_2037	0.62	+0.5
2,366,463	+		Psyr_2037	0.62	+0.2
2,366,463	+		Psyr_2037	0.62	-0.2
2,366,463	+		Psyr_2037	0.62	+1.8
2,366,463	+		Psyr_2037	0.62	+1.0
2,366,463	+		Psyr_2037	0.62	+0.7
2,366,463	+		Psyr_2037	0.62	-0.4
2,366,464	-		Psyr_2037	0.62	+0.5
2,366,464	-		Psyr_2037	0.62	-2.6
2,366,464	-		Psyr_2037	0.62	-0.7
2,366,464	-		Psyr_2037	0.62	-0.3
2,366,464	-		Psyr_2037	0.62	+1.5
2,366,464	-		Psyr_2037	0.62	+0.4
2,366,464	-		Psyr_2037	0.62	-1.4
2,366,464	-		Psyr_2037	0.62	-0.4
2,366,464	-		Psyr_2037	0.62	-1.6
2,366,472	+		Psyr_2037	0.63	-0.7
2,366,472	+		Psyr_2037	0.63	+4.0
2,366,472	+		Psyr_2037	0.63	-0.3
2,366,473	-		Psyr_2037	0.63	-0.6
2,366,688	+		Psyr_2037	0.71	+0.6
2,366,689	-		Psyr_2037	0.71	+2.4
2,366,689	-		Psyr_2037	0.71	-2.0
2,366,689	-		Psyr_2037	0.71	-1.3
2,366,787	-		Psyr_2037	0.75	-2.1
2,366,787	-		Psyr_2037	0.75	-1.3
2,366,853	+		Psyr_2037	0.78	+3.0
2,366,880	+		Psyr_2037	0.79	-0.6
2,366,880	+		Psyr_2037	0.79	+1.5
2,367,060	-		Psyr_2037	0.86	-0.5
2,367,176	+				+2.3
2,367,252	+				+0.3
2,367,252	+				-0.2
2,367,359	-				+0.4
2,367,359	-				-0.7
2,367,399	-				+0.0
2,367,399	-				+0.9
2,367,464	+				+0.0
2,367,464	+				+0.0
2,367,464	+				+0.4
2,367,464	+				-1.1
2,367,464	+				+1.0
2,367,464	+				-2.0
2,367,465	-				+1.8
2,367,465	-				+0.7
2,367,740	+		Psyr_2038	0.40	-0.3
2,367,741	-		Psyr_2038	0.40	-1.9
2,367,763	+		Psyr_2038	0.43	+0.4
2,367,795	-		Psyr_2038	0.47	+0.4
2,367,801	+		Psyr_2038	0.48	+0.0
2,367,850	+		Psyr_2038	0.54	+1.6
2,367,851	-		Psyr_2038	0.54	-0.3
2,367,903	+		Psyr_2038	0.61	+1.0
2,367,903	+		Psyr_2038	0.61	+1.0
2,367,989	+		Psyr_2038	0.73	-0.8
2,368,049	+		Psyr_2038	0.81	-0.2
2,368,049	+		Psyr_2038	0.81	+1.5
2,368,050	-		Psyr_2038	0.81	+0.2
2,368,050	-		Psyr_2038	0.81	-0.4
2,368,116	+				+1.1
2,368,116	+				+0.1
2,368,117	-				+0.5
2,368,117	-				-0.1
2,368,117	-				+0.5
2,368,118	+				-0.7
2,368,118	+				-1.3
2,368,119	-				-0.3
2,368,119	-				-2.4
2,368,119	-				-0.9
2,368,119	-				-1.0
2,368,119	-				-1.8
2,368,119	-				-0.1
2,368,120	+				+0.0
2,368,120	+				-1.4
2,368,120	+				+0.8
2,368,120	+				-0.6
2,368,120	+				-1.3
2,368,120	+				+1.0
2,368,121	-				+2.3
2,368,121	-				-1.8
2,368,121	-				+0.5
2,368,121	-				-0.6
2,368,121	-				-2.6
2,368,121	-				-0.6
2,368,121	-				-0.4
2,368,121	-				+1.0
2,368,121	-				+0.3
2,368,121	-				+0.2
2,368,121	-				-0.3
2,368,121	-				-1.1
2,368,121	-				+0.0
2,368,121	-				-2.7
2,368,121	-				+0.8
2,368,198	+				-1.2
2,368,205	+				-2.9
2,368,205	+				-0.2
2,368,206	-				-2.3
2,368,234	+				+0.3
2,368,262	-				+1.0
2,368,271	+				-1.3
2,368,296	+				-0.7
2,368,296	+				-0.1
2,368,296	+				+3.1
2,368,297	-				+0.2
2,368,297	-				+0.2
2,368,322	+				-0.2
2,368,322	+				-0.3
2,368,322	+				+1.6
2,368,322	+				+0.1
2,368,322	+				+0.6
2,368,323	-				+1.7
2,368,323	-				+0.4
2,368,323	-				-1.2
2,368,323	-				+2.0
2,368,323	-				+2.1
2,368,371	+		Psyr_2039	0.13	-0.1
2,368,375	-		Psyr_2039	0.14	+0.3