Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1945

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
2,216,773	+				-0.2
2,216,774	-				-0.4
2,216,777	+				+0.2
2,216,778	-				-0.6
2,216,838	+				+1.2
2,216,839	-				-3.1
2,216,885	+				+0.7
2,216,886	-				+1.0
2,216,886	-				+1.6
2,216,956	+				+1.3
2,216,980	+				-0.8
2,216,980	+				-0.3
2,216,980	+				+1.5
2,216,981	-				-3.7
2,216,981	-				-1.4
2,216,981	-				-2.6
2,217,137	-		Psyr_1944	0.29	+1.8
2,217,421	+		Psyr_1944	0.66	+0.0
2,217,458	+		Psyr_1944	0.71	+1.0
2,217,459	-		Psyr_1944	0.71	+1.1
2,217,459	-		Psyr_1944	0.71	+0.3
2,217,459	-		Psyr_1944	0.71	-0.6
2,217,563	-		Psyr_1944	0.85	+0.4
2,217,737	+				-0.1
2,217,738	-				-0.7
2,217,997	-				+0.5
2,217,997	-				+0.6
2,218,023	+				+1.3
2,218,024	-				-0.7
2,218,024	-				-2.0
2,218,284	+				+0.0
2,218,285	-				+0.3
2,218,285	-				+1.3
2,218,422	+				+0.3
2,218,423	-				-0.8
2,218,501	-				+2.0
2,218,749	+				+1.1
2,218,773	+				+1.0
2,218,773	+				+0.5
2,218,773	+				+0.8
2,218,773	+				+1.8
2,218,774	-				+0.8
2,218,774	-				+2.3
2,218,774	-				-0.4
2,218,774	-				-0.1
2,218,774	-				-2.0
2,219,100	+		Psyr_1945	0.10	+2.0
2,219,100	+		Psyr_1945	0.10	+1.7
2,219,100	+		Psyr_1945	0.10	+0.3
2,219,100	+		Psyr_1945	0.10	-0.7
2,219,100	+		Psyr_1945	0.10	-0.6
2,219,100	+		Psyr_1945	0.10	-1.0
2,219,101	-		Psyr_1945	0.10	+0.6
2,219,101	-		Psyr_1945	0.10	-1.9
2,219,861	+		Psyr_1945	0.16	-1.7
2,219,871	+		Psyr_1945	0.16	+0.7
2,219,979	+		Psyr_1945	0.17	+1.0
2,220,262	-		Psyr_1945	0.19	+0.8
2,220,262	-		Psyr_1945	0.19	-0.5
2,220,381	+		Psyr_1945	0.20	+2.2
2,220,382	-				+1.8
2,220,678	-		Psyr_1945	0.22	-2.4
2,221,044	+		Psyr_1945	0.25	+0.1
2,221,044	+		Psyr_1945	0.25	+1.3
2,221,044	+		Psyr_1945	0.25	+2.0
2,221,044	+		Psyr_1945	0.25	+0.5
2,221,044	+		Psyr_1945	0.25	+1.0
2,221,045	-		Psyr_1945	0.25	-0.4
2,221,045	-		Psyr_1945	0.25	-1.3
2,221,045	-		Psyr_1945	0.25	+1.2
2,221,045	-		Psyr_1945	0.25	-1.6
2,221,045	-		Psyr_1945	0.25	-0.3
2,221,048	+		Psyr_1945	0.25	-2.8
2,221,048	+		Psyr_1945	0.25	+1.0
2,221,048	+		Psyr_1945	0.25	-2.1
2,221,049	-		Psyr_1945	0.25	-2.0
2,221,049	-		Psyr_1945	0.25	-1.1
2,221,049	-				+2.0
2,221,049	-		Psyr_1945	0.25	-1.2
2,221,049	-		Psyr_1945	0.25	+0.6
2,221,049	-		Psyr_1945	0.25	+0.7
2,221,049	-		Psyr_1945	0.25	+1.0
2,221,293	+		Psyr_1945	0.27	-1.1
2,221,402	-		Psyr_1945	0.28	+1.6
2,221,444	-		Psyr_1945	0.28	-0.3
2,221,617	+		Psyr_1945	0.30	-1.4
2,221,704	+		Psyr_1945	0.30	-2.8
2,221,705	-		Psyr_1945	0.30	+0.4
2,221,705	-		Psyr_1945	0.30	-0.4
2,222,024	-		Psyr_1945	0.33	+0.1
2,222,134	+		Psyr_1945	0.34	+1.3
2,222,134	+		Psyr_1945	0.34	-0.7
2,222,134	+		Psyr_1945	0.34	-0.2
2,222,134	+		Psyr_1945	0.34	+0.2
2,222,135	-		Psyr_1945	0.34	+0.7
2,222,135	-		Psyr_1945	0.34	+1.2
2,222,135	-		Psyr_1945	0.34	+0.0
2,222,226	+		Psyr_1945	0.34	-0.4
2,222,346	+		Psyr_1945	0.35	+1.0
2,222,346	+		Psyr_1945	0.35	+0.8
2,222,347	-		Psyr_1945	0.35	-1.2
2,222,496	+		Psyr_1945	0.36	-1.0
2,222,497	-		Psyr_1945	0.36	-0.2
2,222,568	+		Psyr_1945	0.37	-1.6
2,222,568	+		Psyr_1945	0.37	-0.6
2,222,568	+		Psyr_1945	0.37	-0.1
2,222,568	+		Psyr_1945	0.37	+1.0
2,222,568	+		Psyr_1945	0.37	+0.3
2,222,569	-		Psyr_1945	0.37	+0.9
2,222,569	-		Psyr_1945	0.37	-1.1
2,222,569	-		Psyr_1945	0.37	-1.0
2,222,570	+		Psyr_1945	0.37	+1.1
2,222,570	+		Psyr_1945	0.37	+1.0
2,222,570	+		Psyr_1945	0.37	-0.1
2,222,570	+		Psyr_1945	0.37	-1.0
2,222,571	-		Psyr_1945	0.37	+0.2
2,222,571	-		Psyr_1945	0.37	+1.6
2,222,571	-		Psyr_1945	0.37	+0.8
2,222,571	-		Psyr_1945	0.37	-1.0
2,222,977	-		Psyr_1945	0.40	+0.7
2,223,030	+		Psyr_1945	0.40	+0.5
2,223,342	+		Psyr_1945	0.43	+0.9
2,223,342	+		Psyr_1945	0.43	+0.0
2,223,342	+		Psyr_1945	0.43	+0.2
2,223,343	-		Psyr_1945	0.43	-1.3
2,223,343	-		Psyr_1945	0.43	+1.1
2,223,343	-		Psyr_1945	0.43	+0.5
2,223,343	-		Psyr_1945	0.43	-1.0
2,223,484	-		Psyr_1945	0.44	+0.2
2,223,540	+		Psyr_1945	0.44	+0.4
2,223,633	+		Psyr_1945	0.45	-0.3
2,223,987	+		Psyr_1945	0.48	+0.3
2,223,987	+		Psyr_1945	0.48	+0.2
2,224,158	+		Psyr_1945	0.49	+4.2
2,224,158	+		Psyr_1945	0.49	-0.4
2,224,158	+		Psyr_1945	0.49	-1.2
2,224,159	-		Psyr_1945	0.49	-3.1
2,224,159	-		Psyr_1945	0.49	+3.0
2,224,425	+		Psyr_1945	0.51	+0.8
2,224,572	+		Psyr_1945	0.52	-0.4
2,224,573	-		Psyr_1945	0.52	-0.1
2,224,614	+		Psyr_1945	0.53	-0.8
2,224,614	+		Psyr_1945	0.53	-0.1
2,224,614	+		Psyr_1945	0.53	+0.5
2,224,615	-		Psyr_1945	0.53	-0.6
2,224,615	-		Psyr_1945	0.53	-0.7
2,224,788	+		Psyr_1945	0.54	+1.2
2,224,789	-		Psyr_1945	0.54	-1.0
2,224,797	+		Psyr_1945	0.54	+1.8
2,224,798	-		Psyr_1945	0.54	+0.4
2,224,798	-		Psyr_1945	0.54	-0.6
2,224,798	-		Psyr_1945	0.54	+0.8
2,225,055	-		Psyr_1945	0.56	-1.0
2,225,055	-		Psyr_1945	0.56	-0.8
2,225,072	+		Psyr_1945	0.56	-0.6
2,225,077	-		Psyr_1945	0.56	-0.7
2,225,220	+		Psyr_1945	0.57	+1.0
2,225,331	+		Psyr_1945	0.58	+1.8
2,225,331	+		Psyr_1945	0.58	-0.6
2,225,385	+		Psyr_1945	0.59	-0.8
2,225,385	+		Psyr_1945	0.59	-0.2
2,225,385	+		Psyr_1945	0.59	-1.2
2,225,386	-		Psyr_1945	0.59	+1.4
2,225,386	-		Psyr_1945	0.59	-0.4
2,225,386	-		Psyr_1945	0.59	-0.7
2,225,535	+		Psyr_1945	0.60	+2.0
2,225,698	+		Psyr_1945	0.61	-1.7
2,225,775	+		Psyr_1945	0.62	+0.4
2,225,775	+		Psyr_1945	0.62	+0.3
2,225,775	+		Psyr_1945	0.62	+2.1
2,225,775	+		Psyr_1945	0.62	+0.5
2,225,775	+		Psyr_1945	0.62	+4.6
2,225,776	-		Psyr_1945	0.62	-0.1
2,225,776	-		Psyr_1945	0.62	-1.1
2,225,776	-		Psyr_1945	0.62	-2.4
2,225,776	-		Psyr_1945	0.62	+0.1
2,225,887	-		Psyr_1945	0.62	-0.3
2,225,887	-		Psyr_1945	0.62	+0.0
2,225,891	-		Psyr_1945	0.62	+0.6
2,225,972	+		Psyr_1945	0.63	+0.7
2,226,150	-				+0.4
2,226,335	+		Psyr_1945	0.66	+1.5
2,226,336	-		Psyr_1945	0.66	-0.3
2,226,336	-		Psyr_1945	0.66	-0.6
2,226,586	-		Psyr_1945	0.68	-0.8
2,227,134	+		Psyr_1945	0.72	+1.0
2,227,200	+		Psyr_1945	0.72	+0.6
2,227,200	+		Psyr_1945	0.72	+1.7
2,227,200	+		Psyr_1945	0.72	+0.8
2,227,201	-		Psyr_1945	0.72	-1.0
2,227,201	-		Psyr_1945	0.72	-0.6
2,227,201	-		Psyr_1945	0.72	+2.6
2,227,201	-		Psyr_1945	0.72	+0.3
2,227,201	-		Psyr_1945	0.72	-0.4
2,227,201	-		Psyr_1945	0.72	+0.5
2,227,327	-		Psyr_1945	0.73	-0.6
2,227,327	-		Psyr_1945	0.73	+3.1
2,227,617	+		Psyr_1945	0.76	+0.7
2,227,617	+		Psyr_1945	0.76	+0.8
2,227,618	-		Psyr_1945	0.76	-0.2
2,227,620	+		Psyr_1945	0.76	-1.0
2,227,620	+		Psyr_1945	0.76	+0.0
2,227,620	+		Psyr_1945	0.76	-0.1
2,227,620	+		Psyr_1945	0.76	+1.0
2,227,621	-		Psyr_1945	0.76	+1.0
2,227,621	-		Psyr_1945	0.76	+1.0
2,227,621	-		Psyr_1945	0.76	+0.0
2,227,621	-		Psyr_1945	0.76	-0.2
2,227,621	-		Psyr_1945	0.76	+1.0
2,227,788	+		Psyr_1945	0.77	-0.1
2,227,789	-		Psyr_1945	0.77	+0.1
2,227,789	-		Psyr_1945	0.77	-0.2
2,227,789	-		Psyr_1945	0.77	-1.3
2,228,010	+		Psyr_1945	0.79	+0.5
2,228,010	+		Psyr_1945	0.79	+2.9
2,228,010	+		Psyr_1945	0.79	+2.2
2,228,011	-		Psyr_1945	0.79	-0.9
2,228,071	-		Psyr_1945	0.79	+1.5
2,228,227	-		Psyr_1945	0.80	-0.4
2,228,538	+		Psyr_1945	0.83	+1.2
2,228,943	+		Psyr_1945	0.86	-0.7
2,228,943	+		Psyr_1945	0.86	+0.0
2,228,943	+		Psyr_1945	0.86	-1.1
2,228,944	-		Psyr_1945	0.86	-2.3
2,228,944	-		Psyr_1945	0.86	-1.6
2,228,947	+		Psyr_1945	0.86	-0.3
2,228,948	-		Psyr_1945	0.86	-1.2
2,228,948	-		Psyr_1945	0.86	-0.1
2,228,948	-		Psyr_1945	0.86	-1.0
2,228,948	-		Psyr_1945	0.86	+4.3
2,229,021	+		Psyr_1945	0.86	-1.6
2,229,021	+		Psyr_1945	0.86	-0.3
2,229,396	+		Psyr_1945	0.89	+0.4
2,229,396	+		Psyr_1945	0.89	+1.8
2,229,397	-		Psyr_1945	0.89	+2.5
2,229,397	-		Psyr_1945	0.89	+0.9
2,229,397	-		Psyr_1945	0.89	+0.1
2,229,490	-				+0.4
2,229,826	-				+0.2
2,229,933	+				-1.6
2,229,934	-				-0.2
2,230,017	+				-1.3
2,230,018	-				-2.6
2,230,137	+				-2.9
2,230,138	-				+0.1
2,230,138	-				+0.6
2,230,138	-				+0.2
2,230,368	+				-2.4
2,230,369	-				+0.2
2,230,369	-				-0.9
2,230,640	+				-1.3
2,230,904	+				+0.0
2,230,904	+				+0.8
2,230,905	-				-0.1
2,231,015	+				-1.6
2,231,254	+		Psyr_1946	0.22	-3.2
2,231,255	-		Psyr_1946	0.22	+0.9