Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1933

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
2,204,981	-		Psyr_1931	0.28	-1.7
2,204,981	-		Psyr_1931	0.28	+1.0
2,205,009	+		Psyr_1931	0.36	+0.7
2,205,009	+		Psyr_1931	0.36	-0.3
2,205,009	+		Psyr_1931	0.36	+0.4
2,205,017	+		Psyr_1931	0.39	-0.3
2,205,017	+		Psyr_1931	0.39	-0.4
2,205,071	+		Psyr_1931	0.56	-1.2
2,205,072	-		Psyr_1931	0.56	-0.7
2,205,106	+		Psyr_1931	0.66	-1.0
2,205,107	-		Psyr_1931	0.67	-0.8
2,205,129	-		Psyr_1931	0.73	-2.7
2,205,138	+		Psyr_1931	0.76	+0.0
2,205,139	-		Psyr_1931	0.77	-0.7
2,205,139	-		Psyr_1931	0.77	-1.6
2,205,159	-		Psyr_1931	0.83	+1.0
2,205,325	+		Psyr_1932	0.46	+3.0
2,205,325	+		Psyr_1932	0.46	+0.4
2,205,325	+		Psyr_1932	0.46	+0.9
2,205,325	+		Psyr_1932	0.46	+0.9
2,205,326	-		Psyr_1932	0.46	-0.1
2,205,326	-		Psyr_1932	0.46	-0.9
2,205,326	-		Psyr_1932	0.46	+0.0
2,205,326	-		Psyr_1932	0.46	+0.7
2,205,326	-		Psyr_1932	0.46	-1.2
2,205,361	+		Psyr_1932	0.60	+1.5
2,205,362	-		Psyr_1932	0.61	+0.4
2,205,390	+		Psyr_1932	0.72	+0.3
2,205,391	-		Psyr_1932	0.72	+0.8
2,205,415	+		Psyr_1932	0.82	+1.4
2,205,415	+		Psyr_1932	0.82	+0.6
2,205,415	+		Psyr_1932	0.82	+0.2
2,205,415	+		Psyr_1932	0.82	+0.1
2,205,415	+		Psyr_1932	0.82	-0.1
2,205,416	-		Psyr_1932	0.82	-1.5
2,205,416	-		Psyr_1932	0.82	+1.6
2,205,416	-		Psyr_1932	0.82	+1.0
2,205,416	-		Psyr_1932	0.82	+2.6
2,205,416	-		Psyr_1932	0.82	-0.8
2,205,416	-		Psyr_1932	0.82	-0.1
2,205,416	-		Psyr_1932	0.82	-1.7
2,205,416	-		Psyr_1932	0.82	+1.0
2,205,424	+		Psyr_1932	0.86	+1.0
2,205,499	+				+0.6
2,205,499	+				-0.2
2,205,499	+				-0.3
2,205,500	-				+5.0
2,205,500	-				+0.5
2,205,500	-				-0.3
2,205,500	-				-0.5
2,205,500	-				+0.2
2,205,500	-				-0.7
2,205,500	-				-0.4
2,205,500	-				+0.8
2,205,500	-				+0.1
2,205,502	+				+0.5
2,205,502	+				+1.6
2,205,502	+				+0.3
2,205,502	+				+0.4
2,205,502	+				-0.2
2,205,502	+				+1.1
2,205,502	+				+0.1
2,205,502	+				-2.1
2,205,502	+				+0.6
2,205,502	+				+0.4
2,205,502	+				+0.8
2,205,502	+				-1.6
2,205,502	+				-0.5
2,205,502	+				-0.2
2,205,503	-				+0.0
2,205,503	-				+1.3
2,205,503	-				+0.9
2,205,503	-				-0.9
2,205,503	-				-3.8
2,205,503	-				-0.3
2,205,503	-				+2.6
2,205,503	-				+0.5
2,205,503	-				+0.7
2,205,503	-				-1.3
2,205,503	-				+1.7
2,205,503	-				+0.4
2,205,503	-				-0.1
2,205,503	-				-0.8
2,205,509	-				+0.4
2,205,590	-				+0.6
2,205,593	+				-0.5
2,205,593	+				-0.2
2,205,594	-				+1.3
2,205,594	-				+0.7
2,205,594	-				+1.6
2,205,594	-				+1.4
2,205,599	+				-0.5
2,205,599	+				+0.5
2,205,600	-				+0.1
2,205,600	-				-0.6
2,205,702	+				+0.0
2,205,702	+				+0.5
2,205,702	+				-1.2
2,205,702	+				-1.1
2,205,702	+				+0.2
2,205,702	+				-1.0
2,205,702	+				+0.9
2,205,702	+				+4.2
2,205,702	+				-1.0
2,205,702	+				-0.5
2,205,702	+				+3.6
2,205,702	+				-1.9
2,205,702	+				+0.5
2,205,703	-				+0.3
2,205,703	-				+0.0
2,205,703	-				-0.4
2,205,703	-				+0.5
2,205,703	-				+0.5
2,205,703	-				+0.2
2,205,703	-				-3.1
2,205,831	+				-1.5
2,205,831	+				-0.6
2,205,832	-				+0.4
2,205,832	-				-2.0
2,205,834	+				+2.4
2,205,834	+				-2.3
2,205,834	+				+1.0
2,205,835	-				-0.8
2,205,835	-				+0.7
2,205,835	-				+0.2
2,205,930	-				+1.0
2,205,931	+				+0.0
2,206,048	+		Psyr_1933	0.26	+0.0
2,206,059	+		Psyr_1933	0.28	-2.8
2,206,174	+		Psyr_1933	0.53	-1.5
2,206,174	+		Psyr_1933	0.53	-0.3
2,206,174	+		Psyr_1933	0.53	+0.9
2,206,174	+		Psyr_1933	0.53	-1.5
2,206,174	+		Psyr_1933	0.53	-1.6
2,206,223	+		Psyr_1933	0.63	-1.3
2,206,224	-		Psyr_1933	0.64	-1.6
2,206,301	-		Psyr_1933	0.80	+0.6
2,206,318	-		Psyr_1933	0.84	-0.3
2,206,507	+				+0.8
2,206,507	+				-2.4
2,206,508	-				+1.4
2,206,508	-				-2.0
2,206,508	-				-0.2
2,206,534	+				+0.8
2,206,534	+				-1.0
2,206,534	+				-2.1
2,206,534	+				-0.1
2,206,535	-				+0.6
2,206,535	-				-1.5
2,206,535	-				+1.0
2,206,572	+				+2.4
2,206,572	+				+1.5
2,206,632	-				+0.6
2,206,644	+				-1.3
2,206,644	+				+0.2
2,206,644	+				-1.1
2,206,645	-				+1.4
2,206,645	-				-0.2
2,206,684	+				+1.2
2,206,684	+				+1.0
2,206,684	+				-0.9
2,206,684	+				+2.0
2,206,685	-				-0.6
2,206,685	-				+0.2
2,206,685	-				-0.3
2,206,685	-				+0.0
2,206,685	-				+0.5
2,206,685	-				+2.3
2,206,685	-				+1.2
2,206,694	+				-0.9
2,206,694	+				-0.8
2,206,694	+				+0.4
2,206,694	+				+1.3
2,206,694	+				+0.0
2,206,695	-				-1.3
2,206,695	-				+1.1
2,206,695	-				+0.7
2,206,695	-				+0.5
2,206,709	+				-1.1
2,206,709	+				-0.6
2,206,754	+				-0.5
2,206,754	+				-2.0
2,206,754	+				+2.0
2,206,754	+				+2.4
2,206,754	+				-1.6
2,206,755	-				-0.6
2,206,755	-				-2.3
2,206,755	-				-0.7
2,206,755	-				-0.6
2,206,755	-				-1.0
2,206,755	-				-1.0
2,206,786	+				-0.3
2,206,786	+				-0.1
2,206,787	-				+0.6
2,206,827	+				-0.2
2,206,874	+				-1.0
2,206,984	+				+1.2
2,206,984	+				+1.8
2,206,984	+				-1.7
2,206,984	+				+0.7
2,206,985	-				+0.5
2,206,985	-				-0.8
2,206,985	-				+1.6
2,207,000	-				+0.1
2,207,000	-				+0.7
2,207,015	+				+0.6
2,207,016	-				-1.9
2,207,043	+				-0.2
2,207,063	-				+2.7
2,207,096	-				+0.5
2,207,096	-				-0.2
2,207,168	+		Psyr_1934	0.17	+0.1
2,207,168	+		Psyr_1934	0.17	-0.5
2,207,169	-		Psyr_1934	0.18	-0.9
2,207,170	+		Psyr_1934	0.18	+0.7
2,207,172	+		Psyr_1934	0.18	-0.8
2,207,172	+		Psyr_1934	0.18	+1.3
2,207,172	+		Psyr_1934	0.18	-1.9
2,207,172	+		Psyr_1934	0.18	+2.4
2,207,172	+		Psyr_1934	0.18	-2.0
2,207,173	-		Psyr_1934	0.18	-1.0
2,207,213	+		Psyr_1934	0.25	+1.0
2,207,214	-		Psyr_1934	0.25	-0.0
2,207,215	+		Psyr_1934	0.25	-0.8
2,207,215	+		Psyr_1934	0.25	+0.6
2,207,217	+		Psyr_1934	0.25	-1.3
2,207,217	+		Psyr_1934	0.25	+0.0
2,207,299	+		Psyr_1934	0.38	+0.5
2,207,391	+		Psyr_1934	0.53	+0.2