Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1865

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
2,139,726	+		Psyr_1864	0.21	+0.1
2,139,726	+		Psyr_1864	0.21	+0.7
2,139,848	+		Psyr_1864	0.35	+0.3
2,139,848	+		Psyr_1864	0.35	-1.5
2,139,848	+		Psyr_1864	0.35	-1.7
2,139,848	+		Psyr_1864	0.35	+0.1
2,139,849	-		Psyr_1864	0.35	+0.5
2,139,897	+		Psyr_1864	0.40	+1.4
2,140,195	-		Psyr_1864	0.75	-0.7
2,140,215	+		Psyr_1864	0.77	+0.8
2,140,215	+		Psyr_1864	0.77	-0.5
2,140,215	+		Psyr_1864	0.77	+0.2
2,140,216	-		Psyr_1864	0.77	+0.1
2,140,216	-		Psyr_1864	0.77	-1.5
2,140,216	-		Psyr_1864	0.77	-0.9
2,140,327	-				+0.9
2,140,329	+				+1.5
2,140,330	-				+1.3
2,140,371	+				+1.9
2,140,371	+				+0.4
2,140,371	+				+0.5
2,140,372	-				-1.1
2,140,372	-				-0.2
2,140,372	-				-3.1
2,140,464	+				-0.3
2,140,465	-				-1.4
2,140,465	-				+0.5
2,140,466	+				+0.3
2,140,467	-				-0.8
2,140,467	-				+0.4
2,140,474	+				+1.2
2,140,580	+				-1.2
2,140,580	+				+1.1
2,140,580	+				-0.8
2,140,581	-				+0.9
2,140,581	-				-0.1
2,140,581	-				+0.4
2,140,583	+				-2.7
2,140,584	-				+0.4
2,140,644	-				+1.1
2,140,644	-				-0.6
2,140,745	+				+0.0
2,140,745	+				+0.4
2,140,746	-				-0.5
2,140,746	-				-0.8
2,140,781	+				-1.3
2,140,781	+				-0.5
2,140,781	+				+1.8
2,140,781	+				+0.5
2,140,782	-				-0.9
2,140,782	-				+1.5
2,140,782	-				-0.6
2,140,782	-				+0.0
2,140,811	+				+0.1
2,140,811	+				+2.1
2,140,812	-				+0.7
2,140,812	-				-0.0
2,140,812	-				+0.8
2,140,901	+		Psyr_1865	0.11	-0.7
2,140,901	+		Psyr_1865	0.11	-1.2
2,140,901	+		Psyr_1865	0.11	-1.2
2,140,901	+		Psyr_1865	0.11	+1.2
2,140,901	+		Psyr_1865	0.11	+1.2
2,140,901	+		Psyr_1865	0.11	+0.1
2,140,901	+		Psyr_1865	0.11	-1.1
2,140,901	+		Psyr_1865	0.11	+0.6
2,140,901	+		Psyr_1865	0.11	+0.4
2,140,902	-		Psyr_1865	0.11	+0.6
2,140,902	-		Psyr_1865	0.11	+0.4
2,140,902	-		Psyr_1865	0.11	+2.7
2,140,902	-		Psyr_1865	0.11	+3.1
2,140,902	-		Psyr_1865	0.11	-0.0
2,140,902	-		Psyr_1865	0.11	-1.7
2,140,902	-		Psyr_1865	0.11	-0.5
2,140,902	-		Psyr_1865	0.11	-0.6
2,140,902	-		Psyr_1865	0.11	-0.9
2,140,902	-		Psyr_1865	0.11	+0.1
2,140,902	-		Psyr_1865	0.11	-0.9
2,141,031	-		Psyr_1865	0.17	-1.3
2,141,031	-		Psyr_1865	0.17	+0.5
2,141,072	+		Psyr_1865	0.19	-1.5
2,141,104	+		Psyr_1865	0.21	-0.7
2,141,105	-		Psyr_1865	0.21	+0.8
2,141,277	+		Psyr_1865	0.29	-3.2
2,141,360	+		Psyr_1865	0.33	+0.3
2,141,361	-		Psyr_1865	0.33	-0.6
2,141,437	+		Psyr_1865	0.37	-0.0
2,141,437	+		Psyr_1865	0.37	+0.4
2,141,438	-		Psyr_1865	0.37	+0.8
2,141,438	-		Psyr_1865	0.37	+2.2
2,141,684	+		Psyr_1865	0.48	+1.3
2,141,685	-		Psyr_1865	0.48	+1.8
2,141,876	+		Psyr_1865	0.58	-0.1
2,141,876	+		Psyr_1865	0.58	+1.1
2,141,876	+		Psyr_1865	0.58	+0.6
2,141,876	+		Psyr_1865	0.58	+0.1
2,141,888	+		Psyr_1865	0.58	-1.6
2,141,888	+		Psyr_1865	0.58	-1.2
2,141,889	-		Psyr_1865	0.58	-2.4
2,141,889	-		Psyr_1865	0.58	+1.5
2,141,889	-		Psyr_1865	0.58	+0.4
2,141,889	-		Psyr_1865	0.58	-0.8
2,141,889	-		Psyr_1865	0.58	-1.1
2,141,889	-		Psyr_1865	0.58	-0.2
2,141,894	+		Psyr_1865	0.58	-0.8
2,141,894	+		Psyr_1865	0.58	-0.6
2,141,894	+		Psyr_1865	0.58	-0.7
2,141,894	+		Psyr_1865	0.58	-2.5
2,141,895	-		Psyr_1865	0.59	-0.9
2,141,895	-		Psyr_1865	0.59	+1.0
2,141,895	-		Psyr_1865	0.59	-0.0
2,142,080	+		Psyr_1865	0.67	+2.4
2,142,081	-		Psyr_1865	0.67	+0.1
2,142,081	-		Psyr_1865	0.67	-0.1
2,142,081	-		Psyr_1865	0.67	-0.9
2,142,081	-		Psyr_1865	0.67	-1.1
2,142,081	-		Psyr_1865	0.67	+0.2
2,142,081	-		Psyr_1865	0.67	-0.2
2,142,081	-		Psyr_1865	0.67	+3.0
2,142,081	-		Psyr_1865	0.67	+0.5
2,142,245	+		Psyr_1865	0.75	-0.5
2,142,245	+		Psyr_1865	0.75	+0.2
2,142,246	-		Psyr_1865	0.75	+0.5
2,142,246	-				+0.7
2,142,246	-		Psyr_1865	0.75	+0.5
2,142,248	+		Psyr_1865	0.75	+0.2
2,142,248	+		Psyr_1865	0.75	-0.6
2,142,248	+		Psyr_1865	0.75	+1.8
2,142,248	+		Psyr_1865	0.75	-0.4
2,142,249	-		Psyr_1865	0.75	+2.5
2,142,249	-		Psyr_1865	0.75	-1.6
2,142,249	-		Psyr_1865	0.75	+0.7
2,142,391	+		Psyr_1865	0.82	+0.0
2,142,608	+				-0.0
2,142,608	+				+1.1
2,142,609	-				+1.1
2,142,609	-				-0.5
2,142,609	-				-0.5
2,142,735	+				-0.1
2,142,735	+				-0.9
2,142,735	+				-1.1
2,142,736	-				+0.1
2,142,736	-				+1.1
2,142,736	-				-2.5
2,142,915	+				+0.2
2,142,916	-				-0.7
2,142,916	-				-1.0
2,142,972	+				-1.7
2,142,972	+				+0.6
2,142,973	-				-1.2
2,143,125	-		Psyr_1866	0.73	-1.9
2,143,148	+		Psyr_1866	0.83	-0.4
2,143,149	-		Psyr_1866	0.84	-0.6
2,143,173	-				+0.9
2,143,241	+				-1.2
2,143,247	+				+1.0
2,143,248	-				-0.2
2,143,323	+				-0.2
2,143,323	+				-1.5
2,143,323	+				+0.1
2,143,324	-				+0.1
2,143,324	-				+0.1
2,143,324	-				+0.0
2,143,324	-				-0.7
2,143,324	-				+1.2
2,143,324	-				-1.7
2,143,350	-				-0.9
2,143,407	+				+0.1
2,143,407	+				-0.2
2,143,408	-				-2.2
2,143,408	-				+0.4
2,143,408	-				+1.7
2,143,411	+				+0.2
2,143,411	+				+0.0
2,143,411	+				-0.5
2,143,411	+				-0.2
2,143,412	-				+0.5
2,143,412	-				-0.4
2,143,412	-				+0.4
2,143,412	-				+1.8
2,143,412	-				+1.6
2,143,412	-				+0.6
2,143,421	+				+0.1
2,143,421	+				+1.8
2,143,422	-				-1.4
2,143,422	-				-1.0
2,143,447	+				+2.0
2,143,467	+				+0.0
2,143,467	+				-0.4
2,143,468	-				+2.3
2,143,468	-				+0.1
2,143,472	+		Psyr_1867	0.11	+1.1
2,143,472	+		Psyr_1867	0.11	-1.7
2,143,516	+		Psyr_1867	0.24	-0.9
2,143,517	-		Psyr_1867	0.24	-1.4
2,143,613	+		Psyr_1867	0.52	-0.1
2,143,614	-		Psyr_1867	0.52	-1.7
2,143,614	-		Psyr_1867	0.52	+4.0
2,143,614	-		Psyr_1867	0.52	-0.6
2,143,614	-		Psyr_1867	0.52	+0.9
2,143,614	-		Psyr_1867	0.52	+0.3
2,143,657	+		Psyr_1867	0.65	-0.5
2,143,658	-		Psyr_1867	0.65	-1.1
2,143,658	-		Psyr_1867	0.65	-1.2
2,143,658	-		Psyr_1867	0.65	-0.5
2,143,658	-		Psyr_1867	0.65	-0.3
2,143,666	+		Psyr_1867	0.68	+0.0
2,143,666	+		Psyr_1867	0.68	-1.7
2,143,667	-		Psyr_1867	0.68	+0.5
2,143,667	-		Psyr_1867	0.68	+0.4
2,143,716	+		Psyr_1867	0.82	+0.1
2,143,717	-		Psyr_1867	0.82	-2.7