Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1507

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,692,607	+		Psyr_1506	0.34	+1.9
1,692,608	-		Psyr_1506	0.34	+0.8
1,692,618	+		Psyr_1506	0.35	-0.4
1,692,619	-		Psyr_1506	0.35	-0.1
1,692,621	+		Psyr_1506	0.35	-0.7
1,692,621	+		Psyr_1506	0.35	+0.2
1,692,621	+		Psyr_1506	0.35	-2.5
1,692,621	+		Psyr_1506	0.35	+0.4
1,692,622	-		Psyr_1506	0.35	+0.7
1,692,622	-		Psyr_1506	0.35	-2.1
1,692,622	-		Psyr_1506	0.35	+0.5
1,692,622	-		Psyr_1506	0.35	-0.1
1,692,667	+		Psyr_1506	0.40	-0.4
1,692,667	+		Psyr_1506	0.40	-0.1
1,692,668	-		Psyr_1506	0.40	-1.8
1,692,668	-		Psyr_1506	0.40	-1.8
1,692,670	+		Psyr_1506	0.40	+0.2
1,692,671	-		Psyr_1506	0.41	-3.1
1,692,708	+		Psyr_1506	0.44	+0.9
1,692,708	+		Psyr_1506	0.44	+0.9
1,692,796	+		Psyr_1506	0.54	+1.4
1,692,796	+		Psyr_1506	0.54	+0.0
1,692,823	+		Psyr_1506	0.56	+2.2
1,692,823	+		Psyr_1506	0.56	-0.0
1,692,823	+		Psyr_1506	0.56	+0.2
1,692,823	+		Psyr_1506	0.56	-1.9
1,692,823	+		Psyr_1506	0.56	-1.5
1,692,823	+		Psyr_1506	0.56	-1.8
1,692,823	+		Psyr_1506	0.56	+0.0
1,692,824	-		Psyr_1506	0.57	-0.2
1,692,824	-		Psyr_1506	0.57	-0.9
1,692,824	-		Psyr_1506	0.57	-1.5
1,692,824	-		Psyr_1506	0.57	-0.8
1,692,824	-		Psyr_1506	0.57	+0.2
1,692,824	-		Psyr_1506	0.57	-0.3
1,692,833	+		Psyr_1506	0.58	-0.3
1,692,833	+		Psyr_1506	0.58	-0.3
1,692,833	+		Psyr_1506	0.58	+1.4
1,692,833	+		Psyr_1506	0.58	-0.4
1,692,834	-		Psyr_1506	0.58	+0.1
1,692,834	-		Psyr_1506	0.58	-0.1
1,692,834	-		Psyr_1506	0.58	-0.3
1,692,834	-		Psyr_1506	0.58	+0.2
1,692,834	-		Psyr_1506	0.58	+0.3
1,692,834	-		Psyr_1506	0.58	+0.1
1,693,141	+		Psyr_1506	0.90	+0.7
1,693,142	-				-2.5
1,693,142	-				+1.8
1,693,193	-				-0.9
1,693,231	+				+0.9
1,693,231	+				-0.7
1,693,232	-				-1.6
1,693,232	-				-0.7
1,693,232	-				+0.2
1,693,235	+				-3.3
1,693,235	+				-1.3
1,693,235	+				-1.8
1,693,235	+				+1.1
1,693,235	+				-1.6
1,693,235	+				-0.1
1,693,235	+				+0.2
1,693,236	-				-0.4
1,693,236	-				+0.8
1,693,236	-				+0.1
1,693,236	-				+0.8
1,693,236	-				-0.8
1,693,236	-				-0.8
1,693,236	-				-0.3
1,693,294	-				-0.5
1,693,294	-				+1.7
1,693,302	+				+4.1
1,693,302	+				-0.7
1,693,302	+				-0.3
1,693,303	-				-0.5
1,693,303	-				+0.9
1,693,303	-				-0.8
1,693,303	-				+0.0
1,693,306	-				+0.9
1,693,348	+				-2.2
1,693,425	+				+0.4
1,693,496	-				-0.9
1,693,496	-				-0.2
1,693,500	-				+0.8
1,693,500	-				-2.0
1,693,500	-				-1.3
1,693,542	+				+2.2
1,693,542	+				-1.1
1,693,542	+				+0.7
1,693,542	+				+1.0
1,693,542	+				-2.2
1,693,542	+				-0.3
1,693,542	+				-0.3
1,693,542	+				+0.7
1,693,543	-				+1.2
1,693,543	-				-0.9
1,693,543	-				-0.2
1,693,548	-				-0.3
1,693,556	-				+0.5
1,693,575	+				-0.2
1,693,575	+				-0.8
1,693,576	-				-2.2
1,693,576	-				-1.0
1,693,576	-				-0.4
1,693,576	-				-0.3
1,693,581	+				+0.2
1,693,581	+				+0.7
1,693,582	-				+1.7
1,693,582	-				+1.8
1,693,582	-				+1.1
1,693,603	+				-2.4
1,693,604	-				-0.3
1,693,604	-				+3.3
1,693,714	+		Psyr_1507	0.31	+0.4
1,693,714	+		Psyr_1507	0.31	+0.2
1,693,715	-		Psyr_1507	0.32	+2.2
1,693,762	+		Psyr_1507	0.42	-0.5
1,693,792	+		Psyr_1507	0.49	-0.8
1,693,792	+		Psyr_1507	0.49	-1.6
1,693,793	-		Psyr_1507	0.49	-1.3
1,693,886	+		Psyr_1507	0.70	-1.2
1,693,886	+		Psyr_1507	0.70	-1.9
1,693,983	+				-1.8
1,693,983	+				-1.5
1,694,024	+				-0.3
1,694,024	+				+1.3
1,694,024	+				-1.6
1,694,024	+				+1.3
1,694,024	+				+0.1
1,694,025	-				+0.2
1,694,025	-				-0.6
1,694,025	-				-1.9
1,694,088	+				-1.3
1,694,088	+				-0.9
1,694,089	-				-0.4
1,694,089	-				-0.1
1,694,089	-				-2.7
1,694,091	+				-1.6
1,694,091	+				+0.7
1,694,092	-				-0.6
1,694,097	+				+4.6
1,694,097	+				-0.9
1,694,097	+				+1.1
1,694,097	+				-0.3
1,694,098	-				+0.7
1,694,098	-				-0.1
1,694,113	+				-0.3
1,694,114	-				-1.4
1,694,114	-				+0.1
1,694,253	+		Psyr_1508	0.14	+1.2
1,694,266	+		Psyr_1508	0.15	-0.6
1,694,266	+		Psyr_1508	0.15	-0.0
1,694,266	+		Psyr_1508	0.15	+2.1
1,694,266	+		Psyr_1508	0.15	+1.0
1,694,267	-		Psyr_1508	0.15	-1.0
1,694,267	-		Psyr_1508	0.15	+0.1
1,694,267	-		Psyr_1508	0.15	+0.4
1,694,678	+		Psyr_1508	0.58	+0.7
1,694,750	+		Psyr_1508	0.66	+0.4
1,694,750	+		Psyr_1508	0.66	-1.8
1,694,750	+		Psyr_1508	0.66	+0.1
1,694,750	+		Psyr_1508	0.66	+0.5
1,694,750	+		Psyr_1508	0.66	-1.6
1,694,750	+		Psyr_1508	0.66	+0.9
1,694,750	+		Psyr_1508	0.66	+1.2
1,694,750	+		Psyr_1508	0.66	+1.1
1,694,751	-		Psyr_1508	0.66	-0.5
1,694,751	-		Psyr_1508	0.66	-0.2
1,694,751	-		Psyr_1508	0.66	-0.5
1,694,754	+		Psyr_1508	0.66	-0.4
1,694,754	+		Psyr_1508	0.66	+0.2
1,694,754	+		Psyr_1508	0.66	-0.3
1,694,754	+		Psyr_1508	0.66	-1.8
1,694,754	+		Psyr_1508	0.66	+0.3
1,694,754	+		Psyr_1508	0.66	-0.7
1,694,754	+		Psyr_1508	0.66	+2.2
1,694,754	+		Psyr_1508	0.66	-1.3
1,694,755	-		Psyr_1508	0.66	-0.4
1,694,755	-		Psyr_1508	0.66	-1.0
1,694,755	-		Psyr_1508	0.66	-1.1
1,694,755	-		Psyr_1508	0.66	-1.3
1,694,755	-		Psyr_1508	0.66	-0.6
1,694,755	-		Psyr_1508	0.66	-0.7
1,694,755	-		Psyr_1508	0.66	-0.1
1,694,755	-		Psyr_1508	0.66	-0.7
1,694,760	+		Psyr_1508	0.67	+1.2
1,694,760	+		Psyr_1508	0.67	+1.9
1,694,760	+		Psyr_1508	0.67	+0.1
1,694,760	+		Psyr_1508	0.67	-0.6
1,694,760	+		Psyr_1508	0.67	+1.1
1,694,760	+		Psyr_1508	0.67	-0.1
1,694,760	+		Psyr_1508	0.67	-1.1
1,694,760	+		Psyr_1508	0.67	-0.3
1,694,760	+		Psyr_1508	0.67	-1.1
1,694,760	+		Psyr_1508	0.67	+0.1
1,694,760	+		Psyr_1508	0.67	-1.8
1,694,760	+		Psyr_1508	0.67	+1.1
1,694,760	+		Psyr_1508	0.67	-0.9
1,694,760	+		Psyr_1508	0.67	+0.2
1,694,760	+		Psyr_1508	0.67	-0.6
1,694,761	-		Psyr_1508	0.67	+1.5
1,694,761	-		Psyr_1508	0.67	-0.1
1,694,761	-		Psyr_1508	0.67	-0.9
1,694,761	-		Psyr_1508	0.67	+0.2
1,694,761	-		Psyr_1508	0.67	-1.1
1,694,761	-		Psyr_1508	0.67	+0.5
1,694,761	-		Psyr_1508	0.67	+1.1
1,694,761	-		Psyr_1508	0.67	-0.7
1,694,761	-		Psyr_1508	0.67	-0.1
1,694,761	-		Psyr_1508	0.67	+0.2
1,694,761	-		Psyr_1508	0.67	-0.8
1,694,761	-		Psyr_1508	0.67	-0.4
1,694,761	-		Psyr_1508	0.67	+0.7
1,694,761	-		Psyr_1508	0.67	-0.8
1,694,761	-		Psyr_1508	0.67	-0.7
1,694,761	-		Psyr_1508	0.67	-0.8
1,694,761	-		Psyr_1508	0.67	+1.0
1,694,762	+		Psyr_1508	0.67	-1.9
1,694,762	+		Psyr_1508	0.67	-1.3
1,694,762	+		Psyr_1508	0.67	-1.0
1,694,763	-		Psyr_1508	0.67	-0.2
1,694,763	-		Psyr_1508	0.67	-0.5
1,694,807	+		Psyr_1508	0.71	+0.0
1,694,808	-		Psyr_1508	0.72	+1.2
1,694,859	+		Psyr_1508	0.77	+0.1
1,694,859	+		Psyr_1508	0.77	-0.8
1,694,860	-		Psyr_1508	0.77	+0.0
1,694,860	-		Psyr_1508	0.77	+0.2
1,694,860	-		Psyr_1508	0.77	-1.6
1,694,860	-		Psyr_1508	0.77	+1.5
1,694,862	-		Psyr_1508	0.77	-0.3
1,694,862	-		Psyr_1508	0.77	+1.2
1,694,862	-		Psyr_1508	0.77	+0.7
1,694,943	-		Psyr_1508	0.86	-0.9