Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1502

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,688,700	+		Psyr_1500	0.63	+0.7
1,688,700	+		Psyr_1500	0.63	+0.8
1,688,742	+		Psyr_1500	0.71	-2.3
1,688,838	+		Psyr_1500	0.88	-0.3
1,688,838	+		Psyr_1500	0.88	+0.6
1,688,838	+		Psyr_1500	0.88	-1.1
1,688,838	+		Psyr_1500	0.88	-0.5
1,688,838	+		Psyr_1500	0.88	+0.5
1,688,838	+		Psyr_1500	0.88	-2.2
1,688,838	+		Psyr_1500	0.88	-2.5
1,688,838	+		Psyr_1500	0.88	+2.4
1,688,838	+		Psyr_1500	0.88	-1.5
1,688,838	+		Psyr_1500	0.88	-0.4
1,688,838	+		Psyr_1500	0.88	-1.3
1,688,838	+		Psyr_1500	0.88	-1.2
1,688,838	+		Psyr_1500	0.88	+0.4
1,688,839	-		Psyr_1500	0.88	-1.6
1,688,839	-		Psyr_1500	0.88	+0.1
1,688,839	-		Psyr_1500	0.88	-0.1
1,688,839	-		Psyr_1500	0.88	-1.5
1,688,839	-		Psyr_1500	0.88	+1.1
1,688,839	-		Psyr_1500	0.88	-0.3
1,688,839	-		Psyr_1500	0.88	-1.1
1,688,839	-		Psyr_1500	0.88	-1.0
1,688,839	-		Psyr_1500	0.88	+0.8
1,688,839	-		Psyr_1500	0.88	+0.8
1,688,839	-		Psyr_1500	0.88	+0.4
1,688,839	-		Psyr_1500	0.88	-1.3
1,688,839	-		Psyr_1500	0.88	+0.3
1,688,842	+		Psyr_1500	0.89	+1.1
1,688,842	+		Psyr_1500	0.89	+0.5
1,688,921	+				-1.6
1,688,983	-				+0.5
1,689,002	-				-0.1
1,689,008	+		Psyr_1501	0.10	-0.1
1,689,008	+		Psyr_1501	0.10	-1.1
1,689,009	-		Psyr_1501	0.10	+0.4
1,689,009	-		Psyr_1501	0.10	+0.8
1,689,009	-		Psyr_1501	0.10	-0.5
1,689,077	+		Psyr_1501	0.20	-1.0
1,689,078	-		Psyr_1501	0.20	+1.5
1,689,078	-		Psyr_1501	0.20	+0.3
1,689,078	-		Psyr_1501	0.20	-0.2
1,689,078	-		Psyr_1501	0.20	+1.1
1,689,080	+		Psyr_1501	0.20	-0.3
1,689,080	+		Psyr_1501	0.20	-0.3
1,689,080	+		Psyr_1501	0.20	+0.7
1,689,227	-		Psyr_1501	0.40	+1.0
1,689,266	-		Psyr_1501	0.45	-1.3
1,689,374	-		Psyr_1501	0.60	+0.0
1,689,374	-		Psyr_1501	0.60	+0.5
1,689,374	-		Psyr_1501	0.60	+2.6
1,689,374	-		Psyr_1501	0.60	-0.1
1,689,383	-		Psyr_1501	0.61	-1.3
1,689,383	-		Psyr_1501	0.61	-0.0
1,689,610	+				-1.0
1,689,610	+				-1.3
1,689,616	+				+0.6
1,689,616	+				+0.7
1,689,616	+				+0.3
1,689,616	+				-0.2
1,689,616	+				+1.1
1,689,617	-				+0.6
1,689,678	+				-0.0
1,689,678	+				+0.1
1,689,678	+				-0.3
1,689,678	+				+2.9
1,689,678	+				-1.2
1,689,678	+				+0.7
1,689,679	-				-1.9
1,689,679	-				-0.9
1,689,679	-				+0.4
1,689,679	-				+2.5
1,689,679	-				+0.4
1,689,679	-				-1.3
1,689,679	-				+0.4
1,689,679	-				-1.1
1,689,679	-				-0.3
1,689,761	+		Psyr_1502	0.20	+0.1
1,689,865	+		Psyr_1502	0.42	-0.9
1,689,865	+		Psyr_1502	0.42	-1.1
1,689,865	+		Psyr_1502	0.42	+0.1
1,689,866	-		Psyr_1502	0.42	-0.3
1,689,866	-		Psyr_1502	0.42	+0.1
1,689,866	-		Psyr_1502	0.42	-0.9
1,689,866	-		Psyr_1502	0.42	-0.1
1,689,866	-		Psyr_1502	0.42	-1.7
1,689,868	-		Psyr_1502	0.43	-0.6
1,689,915	-		Psyr_1502	0.53	+0.8
1,689,955	+		Psyr_1502	0.61	+0.7
1,689,969	-		Psyr_1502	0.64	+1.6
1,689,978	+		Psyr_1502	0.66	-0.6
1,689,979	-		Psyr_1502	0.66	-1.7
1,689,992	+		Psyr_1502	0.69	-1.0
1,689,992	+		Psyr_1502	0.69	+0.1
1,689,992	+		Psyr_1502	0.69	-1.1
1,689,993	-		Psyr_1502	0.69	+0.9
1,689,993	-		Psyr_1502	0.69	-2.0
1,689,993	-		Psyr_1502	0.69	-0.7
1,690,107	-				-0.9
1,690,121	+				-0.3
1,690,121	+				+0.1
1,690,121	+				+1.3
1,690,121	+				-0.2
1,690,121	+				-0.3
1,690,121	+				-0.6
1,690,121	+				+0.3
1,690,121	+				-1.1
1,690,121	+				-2.4
1,690,121	+				+1.6
1,690,122	-				-0.9
1,690,122	-				-1.9
1,690,122	-				+0.2
1,690,122	-				+0.3
1,690,122	-				-0.6
1,690,122	-				+0.8
1,690,122	-				+0.8
1,690,122	-				-0.9
1,690,122	-				-1.1
1,690,122	-				+1.3
1,690,122	-				-0.2
1,690,122	-				+1.4
1,690,125	+				+0.3
1,690,125	+				-2.3
1,690,125	+				+1.2
1,690,125	+				-0.5
1,690,126	-				-2.6
1,690,147	-				+0.5
1,690,147	-				-1.1
1,690,230	+				+0.9
1,690,230	+				+1.4
1,690,230	+				-0.9
1,690,230	+				+1.1
1,690,230	+				-1.3
1,690,231	-				-0.7
1,690,231	-				-0.2
1,690,231	-				-0.3
1,690,231	-				+1.3
1,690,231	-				+0.8
1,690,231	-				-0.0
1,690,231	-				+0.1
1,690,234	-				-1.2
1,690,304	-		Psyr_1503	0.12	+1.3
1,690,328	-		Psyr_1503	0.14	+0.2
1,690,347	+		Psyr_1503	0.16	-0.6
1,690,347	+		Psyr_1503	0.16	-1.3
1,690,347	+		Psyr_1503	0.16	-0.0
1,690,347	+		Psyr_1503	0.16	-2.1
1,690,348	-		Psyr_1503	0.16	+0.3
1,690,348	-		Psyr_1503	0.16	-3.1
1,690,393	+		Psyr_1503	0.19	+0.7
1,690,418	-		Psyr_1503	0.21	-0.3
1,690,475	-		Psyr_1503	0.26	+1.7
1,690,511	+		Psyr_1503	0.28	-0.1
1,690,554	+		Psyr_1503	0.32	-1.5
1,690,566	+		Psyr_1503	0.33	+0.6
1,690,566	+		Psyr_1503	0.33	-0.5
1,690,566	+		Psyr_1503	0.33	-1.1
1,690,567	-		Psyr_1503	0.33	-0.2
1,690,567	-		Psyr_1503	0.33	-1.7
1,690,567	-		Psyr_1503	0.33	+0.8
1,690,567	-		Psyr_1503	0.33	-1.4
1,690,567	-		Psyr_1503	0.33	+1.6
1,690,567	-		Psyr_1503	0.33	-1.6
1,690,712	+		Psyr_1503	0.44	+1.8
1,690,736	+		Psyr_1503	0.46	+0.3
1,690,737	-		Psyr_1503	0.46	-0.0
1,690,737	-		Psyr_1503	0.46	-0.3
1,690,843	-		Psyr_1503	0.54	-0.1
1,690,843	-		Psyr_1503	0.54	+1.3
1,690,911	+		Psyr_1503	0.59	-0.6
1,690,925	+		Psyr_1503	0.60	-0.3
1,690,925	+		Psyr_1503	0.60	+1.1
1,690,925	+		Psyr_1503	0.60	-0.2
1,691,025	-		Psyr_1503	0.68	+0.7
1,691,029	+		Psyr_1503	0.69	-1.2
1,691,029	+		Psyr_1503	0.69	-0.5
1,691,030	-		Psyr_1503	0.69	-2.1
1,691,030	-		Psyr_1503	0.69	+0.4
1,691,069	+		Psyr_1503	0.72	-0.2
1,691,069	+		Psyr_1503	0.72	+0.7
1,691,069	+		Psyr_1503	0.72	+0.6
1,691,069	+		Psyr_1503	0.72	-0.2
1,691,069	+				-0.2
1,691,069	+		Psyr_1503	0.72	-0.4
1,691,070	-		Psyr_1503	0.72	+0.3
1,691,111	+		Psyr_1503	0.75	+1.4
1,691,111	+		Psyr_1503	0.75	+0.4
1,691,111	+		Psyr_1503	0.75	+0.3
1,691,112	-		Psyr_1503	0.75	-0.2
1,691,132	+		Psyr_1503	0.77	+1.6
1,691,132	+		Psyr_1503	0.77	+0.3
1,691,132	+		Psyr_1503	0.77	+0.3
1,691,132	+		Psyr_1503	0.77	+1.1
1,691,132	+		Psyr_1503	0.77	-1.5
1,691,133	-		Psyr_1503	0.77	-0.4
1,691,133	-		Psyr_1503	0.77	+0.1
1,691,133	-		Psyr_1503	0.77	-1.5
1,691,133	-		Psyr_1503	0.77	+0.1
1,691,133	-		Psyr_1503	0.77	-1.6