Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1440

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,628,408	-		Psyr_1439	0.14	+1.2
1,628,470	+		Psyr_1439	0.21	+0.8
1,628,470	+		Psyr_1439	0.21	+0.3
1,628,470	+		Psyr_1439	0.21	+1.7
1,628,471	-		Psyr_1439	0.21	-1.6
1,628,471	-		Psyr_1439	0.21	+1.2
1,628,474	+		Psyr_1439	0.21	-2.4
1,628,509	+		Psyr_1439	0.25	-0.7
1,628,532	-		Psyr_1439	0.27	+0.5
1,628,551	-		Psyr_1439	0.29	+1.4
1,628,635	+		Psyr_1439	0.37	+2.4
1,628,635	+		Psyr_1439	0.37	-0.2
1,628,636	-		Psyr_1439	0.37	-2.5
1,628,702	+		Psyr_1439	0.44	-0.2
1,628,731	+		Psyr_1439	0.47	+0.9
1,628,731	+		Psyr_1439	0.47	+1.0
1,628,732	-		Psyr_1439	0.47	+0.7
1,628,732	-		Psyr_1439	0.47	-1.7
1,628,732	-		Psyr_1439	0.47	-3.4
1,628,732	-		Psyr_1439	0.47	-0.0
1,628,732	-		Psyr_1439	0.47	+1.0
1,628,740	+		Psyr_1439	0.48	-2.7
1,628,741	-		Psyr_1439	0.48	+0.6
1,628,754	+		Psyr_1439	0.49	-0.4
1,628,764	-		Psyr_1439	0.50	-0.4
1,628,777	+		Psyr_1439	0.52	+0.4
1,628,778	-		Psyr_1439	0.52	-0.7
1,628,783	+		Psyr_1439	0.52	+1.0
1,628,783	+		Psyr_1439	0.52	+0.0
1,628,784	-		Psyr_1439	0.52	-2.2
1,628,784	-		Psyr_1439	0.52	-1.9
1,628,791	+		Psyr_1439	0.53	+0.1
1,628,791	+		Psyr_1439	0.53	-0.3
1,628,791	+		Psyr_1439	0.53	-0.3
1,628,792	-		Psyr_1439	0.53	-0.3
1,628,795	+		Psyr_1439	0.53	-0.6
1,628,796	-		Psyr_1439	0.53	+0.4
1,628,822	+		Psyr_1439	0.56	-0.1
1,628,822	+		Psyr_1439	0.56	+1.3
1,628,822	+		Psyr_1439	0.56	+1.0
1,628,822	+		Psyr_1439	0.56	+1.0
1,628,834	+		Psyr_1439	0.57	+0.5
1,628,835	-		Psyr_1439	0.57	-0.2
1,628,882	+		Psyr_1439	0.62	+0.2
1,628,882	+		Psyr_1439	0.62	-0.5
1,628,920	+		Psyr_1439	0.66	-0.1
1,628,920	+		Psyr_1439	0.66	+0.3
1,628,923	+		Psyr_1439	0.66	+0.7
1,628,923	+		Psyr_1439	0.66	+3.5
1,628,923	+		Psyr_1439	0.66	-0.1
1,628,924	-		Psyr_1439	0.66	+0.8
1,628,924	-		Psyr_1439	0.66	+4.2
1,628,945	+		Psyr_1439	0.68	-2.5
1,628,946	-		Psyr_1439	0.69	+0.1
1,628,980	+		Psyr_1439	0.72	+0.8
1,628,988	+		Psyr_1439	0.73	-2.2
1,628,988	+		Psyr_1439	0.73	+0.4
1,628,988	+		Psyr_1439	0.73	-0.6
1,628,998	+		Psyr_1439	0.74	-0.6
1,628,998	+		Psyr_1439	0.74	-0.6
1,628,999	-		Psyr_1439	0.74	+0.4
1,629,049	+		Psyr_1439	0.79	-1.0
1,629,143	+		Psyr_1439	0.88	+0.6
1,629,143	+		Psyr_1439	0.88	+1.3
1,629,147	+		Psyr_1439	0.89	+0.8
1,629,148	-		Psyr_1439	0.89	+5.3
1,629,269	-				+1.9
1,629,397	+				+0.3
1,629,397	+				-0.7
1,629,398	-				-2.0
1,629,398	-				+0.1
1,629,398	-				+1.7
1,629,398	-				-0.4
1,629,398	-				+0.3
1,629,398	-				-2.5
1,629,401	+				+0.6
1,629,401	+				+1.0
1,629,497	+		Psyr_1440	0.15	-0.4
1,629,596	+		Psyr_1440	0.29	-1.0
1,629,671	+		Psyr_1440	0.40	+0.6
1,629,754	+		Psyr_1440	0.52	+1.8
1,629,754	+		Psyr_1440	0.52	-0.4
1,629,754	+		Psyr_1440	0.52	-1.8
1,629,754	+		Psyr_1440	0.52	+0.2
1,629,754	+		Psyr_1440	0.52	+0.5
1,629,754	+		Psyr_1440	0.52	+1.3
1,629,754	+		Psyr_1440	0.52	-3.0
1,629,755	-		Psyr_1440	0.52	+1.3
1,629,755	-		Psyr_1440	0.52	+0.3
1,629,755	-		Psyr_1440	0.52	+1.9
1,629,850	+		Psyr_1440	0.66	+0.7
1,629,851	-		Psyr_1440	0.66	+1.0
1,629,851	-		Psyr_1440	0.66	+1.9
1,629,851	-		Psyr_1440	0.66	-2.6
1,629,935	+		Psyr_1440	0.78	-2.3
1,629,935	+		Psyr_1440	0.78	-0.0
1,629,935	+		Psyr_1440	0.78	-3.2
1,629,935	+		Psyr_1440	0.78	-1.5
1,629,936	-		Psyr_1440	0.79	-0.7
1,629,936	-		Psyr_1440	0.79	-0.4
1,629,989	+		Psyr_1440	0.86	-1.0
1,629,990	-		Psyr_1440	0.86	-1.9
1,630,025	+				+0.4
1,630,051	+				+1.7
1,630,232	+		Psyr_1441	0.51	+1.3
1,630,256	+		Psyr_1441	0.59	-2.4
1,630,256	+		Psyr_1441	0.59	+1.0
1,630,256	+		Psyr_1441	0.59	-0.2
1,630,256	+		Psyr_1441	0.59	+0.2
1,630,256	+		Psyr_1441	0.59	+0.1
1,630,256	+		Psyr_1441	0.59	-0.7
1,630,256	+		Psyr_1441	0.59	-0.3
1,630,257	-		Psyr_1441	0.59	+1.8
1,630,257	-		Psyr_1441	0.59	-0.3
1,630,257	-		Psyr_1441	0.59	-1.2
1,630,325	+		Psyr_1441	0.82	-2.0
1,630,325	+		Psyr_1441	0.82	-0.3
1,630,325	+		Psyr_1441	0.82	-1.0
1,630,326	-		Psyr_1441	0.82	-0.4
1,630,326	-		Psyr_1441	0.82	-1.2
1,630,326	-		Psyr_1441	0.82	-0.5
1,630,413	+				+1.3
1,630,413	+				-1.3
1,630,413	+				-1.7
1,630,413	+				-2.6
1,630,413	+				+0.8
1,630,413	+				+0.3
1,630,413	+				-0.5
1,630,413	+				-0.1
1,630,413	+				+1.6
1,630,414	-				+1.1
1,630,414	-				+1.0
1,630,414	-				-0.7
1,630,414	-				-0.3
1,630,414	-				+0.3
1,630,414	-				+0.7
1,630,414	-				-0.3
1,630,431	+				-0.8
1,630,431	+				+1.4
1,630,432	-				-1.5
1,630,556	+				-0.4
1,630,622	+				+1.7
1,630,622	+				+0.5
1,630,622	+				-2.9
1,630,622	+				+0.4
1,630,622	+				+0.3
1,630,845	+		Psyr_1442	0.16	-1.6
1,630,845	+		Psyr_1442	0.16	-0.1
1,630,846	-		Psyr_1442	0.16	+2.6
1,630,846	-		Psyr_1442	0.16	-2.3
1,630,850	+		Psyr_1442	0.16	-0.6
1,630,850	+		Psyr_1442	0.16	-0.1
1,630,851	-		Psyr_1442	0.16	+0.3
1,630,851	-		Psyr_1442	0.16	-0.4
1,630,851	-		Psyr_1442	0.16	-0.5
1,630,851	-		Psyr_1442	0.16	+0.3
1,630,851	-		Psyr_1442	0.16	+1.3
1,630,922	+		Psyr_1442	0.18	+1.3
1,630,922	+		Psyr_1442	0.18	+0.1
1,630,922	+		Psyr_1442	0.18	-1.1
1,630,922	+		Psyr_1442	0.18	+0.8
1,630,923	-		Psyr_1442	0.18	-1.7
1,630,923	-		Psyr_1442	0.18	+0.3
1,630,939	+		Psyr_1442	0.19	-1.0
1,630,939	+		Psyr_1442	0.19	+2.1
1,630,940	-		Psyr_1442	0.19	-1.1
1,630,970	+		Psyr_1442	0.20	+1.1
1,630,970	+		Psyr_1442	0.20	-0.3
1,630,970	+		Psyr_1442	0.20	-0.3
1,630,970	+		Psyr_1442	0.20	-0.0
1,630,970	+		Psyr_1442	0.20	+1.1
1,630,970	+		Psyr_1442	0.20	+0.5
1,630,970	+		Psyr_1442	0.20	+0.1
1,630,971	-		Psyr_1442	0.20	-0.5
1,630,971	-		Psyr_1442	0.20	-1.0
1,630,971	-		Psyr_1442	0.20	+0.8
1,630,971	-		Psyr_1442	0.20	+1.3
1,630,971	-		Psyr_1442	0.20	-0.0
1,630,971	-		Psyr_1442	0.20	-0.7
1,630,971	-		Psyr_1442	0.20	+1.2
1,630,971	-		Psyr_1442	0.20	+0.1
1,630,994	+		Psyr_1442	0.21	+1.1
1,630,995	-		Psyr_1442	0.21	+0.5
1,631,009	+		Psyr_1442	0.21	+0.8
1,631,009	+		Psyr_1442	0.21	-0.3
1,631,009	+		Psyr_1442	0.21	+1.0
1,631,009	+		Psyr_1442	0.21	-0.6
1,631,010	-		Psyr_1442	0.21	+0.0
1,631,062	-		Psyr_1442	0.23	-2.0