Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1436

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,624,047	+				+0.6
1,624,047	+				-2.5
1,624,211	-		Psyr_1435	0.25	-0.4
1,624,211	-		Psyr_1435	0.25	+0.0
1,624,273	-		Psyr_1435	0.31	+0.3
1,624,318	+		Psyr_1435	0.36	-1.9
1,624,318	+		Psyr_1435	0.36	-0.3
1,624,318	+		Psyr_1435	0.36	-0.2
1,624,339	+		Psyr_1435	0.38	+0.6
1,624,339	+		Psyr_1435	0.38	+1.1
1,624,339	+		Psyr_1435	0.38	+0.7
1,624,339	+		Psyr_1435	0.38	+0.3
1,624,339	+		Psyr_1435	0.38	+1.7
1,624,339	+		Psyr_1435	0.38	+0.7
1,624,339	+		Psyr_1435	0.38	-0.9
1,624,339	+		Psyr_1435	0.38	-0.7
1,624,339	+		Psyr_1435	0.38	-1.2
1,624,340	-		Psyr_1435	0.38	-1.0
1,624,340	-		Psyr_1435	0.38	+1.2
1,624,340	-		Psyr_1435	0.38	+1.6
1,624,340	-		Psyr_1435	0.38	-0.8
1,624,340	-		Psyr_1435	0.38	+0.9
1,624,340	-		Psyr_1435	0.38	-0.4
1,624,385	+		Psyr_1435	0.43	-1.5
1,624,386	-		Psyr_1435	0.43	+0.7
1,624,402	+		Psyr_1435	0.45	+0.1
1,624,402	+		Psyr_1435	0.45	-1.6
1,624,403	-		Psyr_1435	0.45	+0.3
1,624,455	+		Psyr_1435	0.51	+0.1
1,624,455	+		Psyr_1435	0.51	+0.6
1,624,455	+		Psyr_1435	0.51	+0.4
1,624,456	-		Psyr_1435	0.51	-1.3
1,624,456	-		Psyr_1435	0.51	+2.0
1,624,456	-		Psyr_1435	0.51	+2.0
1,624,456	-		Psyr_1435	0.51	-0.7
1,624,456	-		Psyr_1435	0.51	-1.0
1,624,459	+		Psyr_1435	0.51	+0.6
1,624,459	+		Psyr_1435	0.51	-0.3
1,624,459	+		Psyr_1435	0.51	+0.2
1,624,460	-		Psyr_1435	0.51	+0.5
1,624,460	-		Psyr_1435	0.51	+2.0
1,624,553	+		Psyr_1435	0.61	+0.4
1,624,553	+		Psyr_1435	0.61	-1.2
1,624,553	+		Psyr_1435	0.61	-0.9
1,624,553	+		Psyr_1435	0.61	-0.3
1,624,553	+		Psyr_1435	0.61	-0.7
1,624,553	+		Psyr_1435	0.61	-0.3
1,624,553	+		Psyr_1435	0.61	+0.1
1,624,554	-		Psyr_1435	0.61	+1.7
1,624,554	-		Psyr_1435	0.61	+0.2
1,624,554	-		Psyr_1435	0.61	+0.6
1,624,554	-		Psyr_1435	0.61	+1.6
1,624,723	+		Psyr_1435	0.79	-0.4
1,624,723	+		Psyr_1435	0.79	+4.0
1,624,724	-		Psyr_1435	0.79	+0.2
1,624,724	-		Psyr_1435	0.79	-0.1
1,624,724	-		Psyr_1435	0.79	+0.5
1,624,724	-		Psyr_1435	0.79	+1.8
1,624,754	+		Psyr_1435	0.83	-1.2
1,624,754	+		Psyr_1435	0.83	+3.1
1,624,754	+		Psyr_1435	0.83	-0.7
1,624,761	-		Psyr_1435	0.83	-0.2
1,624,807	-		Psyr_1435	0.88	+0.9
1,624,875	+				-1.9
1,624,875	+				-1.5
1,624,876	-				-2.6
1,624,960	+				-0.4
1,624,970	+				-1.0
1,624,982	+				+1.1
1,624,983	-				-2.5
1,625,018	+				-0.3
1,625,018	+				+0.0
1,625,039	+				-0.1
1,625,039	+				-0.8
1,625,039	+				-0.0
1,625,101	+				+1.2
1,625,102	-				+0.7
1,625,121	+		Psyr_1436	0.11	+2.3
1,625,121	+		Psyr_1436	0.11	-1.4
1,625,122	-		Psyr_1436	0.11	-1.0
1,625,122	-		Psyr_1436	0.11	-1.0
1,625,122	-		Psyr_1436	0.11	+1.5
1,625,204	+		Psyr_1436	0.18	-1.4
1,625,387	+		Psyr_1436	0.32	+0.9
1,625,388	-		Psyr_1436	0.32	+2.1
1,625,388	-		Psyr_1436	0.32	-0.2
1,625,388	-		Psyr_1436	0.32	-3.2
1,625,404	+		Psyr_1436	0.34	+0.6
1,625,404	+		Psyr_1436	0.34	-0.5
1,625,404	+		Psyr_1436	0.34	+0.7
1,625,404	+		Psyr_1436	0.34	-0.8
1,625,405	-		Psyr_1436	0.34	-0.6
1,625,405	-		Psyr_1436	0.34	-1.5
1,625,413	+		Psyr_1436	0.34	-0.1
1,625,413	+		Psyr_1436	0.34	+1.4
1,625,413	+		Psyr_1436	0.34	-1.5
1,625,413	+		Psyr_1436	0.34	-1.0
1,625,413	+		Psyr_1436	0.34	-0.3
1,625,413	+		Psyr_1436	0.34	-0.4
1,625,413	+		Psyr_1436	0.34	+0.4
1,625,414	-		Psyr_1436	0.35	+0.0
1,625,414	-		Psyr_1436	0.35	+0.2
1,625,414	-		Psyr_1436	0.35	+3.8
1,625,414	-		Psyr_1436	0.35	-0.7
1,625,414	-		Psyr_1436	0.35	-0.0
1,625,414	-		Psyr_1436	0.35	-0.6
1,625,550	+		Psyr_1436	0.45	+0.9
1,625,550	+		Psyr_1436	0.45	-0.2
1,625,550	+		Psyr_1436	0.45	+1.6
1,625,550	+		Psyr_1436	0.45	+0.1
1,625,551	-		Psyr_1436	0.46	+0.5
1,625,551	-		Psyr_1436	0.46	+0.8
1,625,551	-		Psyr_1436	0.46	-2.6
1,625,551	-		Psyr_1436	0.46	+0.4
1,625,551	-		Psyr_1436	0.46	-0.4
1,625,601	+		Psyr_1436	0.50	-0.0
1,625,601	+		Psyr_1436	0.50	+2.9
1,625,601	+		Psyr_1436	0.50	+1.3
1,625,601	+		Psyr_1436	0.50	-1.5
1,625,601	+		Psyr_1436	0.50	+0.9
1,625,601	+		Psyr_1436	0.50	+1.7
1,625,601	+		Psyr_1436	0.50	+2.0
1,625,601	+		Psyr_1436	0.50	-0.7
1,625,601	+		Psyr_1436	0.50	+0.0
1,625,602	-		Psyr_1436	0.50	-0.1
1,625,602	-		Psyr_1436	0.50	-0.1
1,625,602	-		Psyr_1436	0.50	+0.4
1,625,602	-		Psyr_1436	0.50	-1.3
1,625,602	-		Psyr_1436	0.50	+1.9
1,625,602	-		Psyr_1436	0.50	-1.0
1,625,602	-		Psyr_1436	0.50	-0.9
1,625,602	-		Psyr_1436	0.50	+1.9
1,625,602	-		Psyr_1436	0.50	-2.3
1,625,602	-		Psyr_1436	0.50	-0.5
1,625,621	+		Psyr_1436	0.51	+2.1
1,625,621	+		Psyr_1436	0.51	-1.0
1,625,622	-		Psyr_1436	0.51	-0.4
1,625,671	+		Psyr_1436	0.55	-1.7
1,625,672	-		Psyr_1436	0.55	+1.3
1,625,829	+		Psyr_1436	0.68	+0.1
1,625,829	+		Psyr_1436	0.68	+2.7
1,625,830	-		Psyr_1436	0.68	-2.1
1,625,830	-		Psyr_1436	0.68	+0.7
1,625,830	-				+0.7
1,625,830	-		Psyr_1436	0.68	-1.2
1,625,830	-		Psyr_1436	0.68	-0.7
1,625,859	+		Psyr_1436	0.70	-0.9
1,625,870	+		Psyr_1436	0.71	+0.4
1,625,870	+		Psyr_1436	0.71	+1.6
1,625,870	+		Psyr_1436	0.71	-0.5
1,625,870	+		Psyr_1436	0.71	+0.1
1,625,870	+		Psyr_1436	0.71	+0.1
1,625,871	-		Psyr_1436	0.71	-1.7
1,625,871	-		Psyr_1436	0.71	+0.0
1,625,871	-		Psyr_1436	0.71	-0.6
1,625,871	-		Psyr_1436	0.71	+0.2
1,625,871	-		Psyr_1436	0.71	+0.8
1,625,871	-		Psyr_1436	0.71	+0.3
1,625,871	-		Psyr_1436	0.71	+0.2
1,625,871	-		Psyr_1436	0.71	+3.2
1,625,925	-		Psyr_1436	0.75	+0.6
1,625,997	+		Psyr_1436	0.81	-1.7
1,626,011	+		Psyr_1436	0.82	+0.3
1,626,012	-		Psyr_1436	0.82	-0.4
1,626,067	+		Psyr_1436	0.87	+1.8
1,626,068	-		Psyr_1436	0.87	+1.3
1,626,068	-		Psyr_1436	0.87	-2.5
1,626,068	-		Psyr_1436	0.87	+2.0
1,626,111	+				-0.0
1,626,112	-				-0.0
1,626,112	-				-0.3
1,626,112	-				+0.4
1,626,112	-				-1.5
1,626,452	+		Psyr_1437	0.24	-0.3
1,626,453	-		Psyr_1437	0.24	-2.5
1,626,457	+		Psyr_1437	0.24	-0.2
1,626,477	+		Psyr_1437	0.27	-0.8
1,626,477	+		Psyr_1437	0.27	+1.3
1,626,477	+		Psyr_1437	0.27	-1.7
1,626,478	-		Psyr_1437	0.27	+2.0
1,626,524	+		Psyr_1437	0.32	-1.0
1,626,524	+		Psyr_1437	0.32	+0.4
1,626,525	-		Psyr_1437	0.32	+0.2
1,626,607	+		Psyr_1437	0.41	-0.2
1,626,608	-		Psyr_1437	0.41	+0.7
1,626,608	-		Psyr_1437	0.41	-0.4
1,626,750	+		Psyr_1437	0.57	-1.0
1,626,750	+		Psyr_1437	0.57	+0.5
1,626,750	+		Psyr_1437	0.57	+0.1
1,626,767	+				-1.5
1,626,809	+		Psyr_1437	0.64	+0.4
1,626,809	+		Psyr_1437	0.64	+0.1
1,626,809	+		Psyr_1437	0.64	+0.5
1,626,809	+		Psyr_1437	0.64	+0.7
1,626,810	-		Psyr_1437	0.64	-0.4
1,626,810	-		Psyr_1437	0.64	+1.2
1,626,810	-		Psyr_1437	0.64	+0.6
1,626,810	-		Psyr_1437	0.64	+0.4
1,626,810	-		Psyr_1437	0.64	-0.9
1,626,810	-		Psyr_1437	0.64	-0.6
1,626,810	-		Psyr_1437	0.64	-0.0
1,626,867	-		Psyr_1437	0.71	+1.3
1,626,867	-		Psyr_1437	0.71	-1.0
1,626,868	+		Psyr_1437	0.71	+1.6
1,626,869	-		Psyr_1437	0.71	-0.0
1,626,885	-		Psyr_1437	0.73	+0.9
1,626,922	+		Psyr_1437	0.77	+0.6
1,626,922	+		Psyr_1437	0.77	+0.0
1,626,922	+		Psyr_1437	0.77	+1.0
1,626,923	-		Psyr_1437	0.77	-1.3
1,626,923	-		Psyr_1437	0.77	+0.9
1,626,923	-		Psyr_1437	0.77	-0.5
1,626,923	-		Psyr_1437	0.77	+0.3
1,626,977	+		Psyr_1437	0.83	+1.3
1,627,041	-				-1.9
1,627,041	-				+1.2
1,627,148	+				-0.6
1,627,148	+				-0.7
1,627,148	+				+0.1
1,627,148	+				-0.5
1,627,148	+				-1.3
1,627,149	-				-0.6
1,627,149	-				+0.5
1,627,149	-				-0.0
1,627,150	+				+0.6
1,627,186	+				+0.2
1,627,186	+				-0.3
1,627,186	+				-0.3
1,627,187	-				-0.0
1,627,187	-				+0.2
1,627,187	-				+0.1
1,627,187	-				+1.5
1,627,187	-				+0.1