Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1435

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,623,001	+				-0.5
1,623,002	-				-0.0
1,623,090	+				-0.1
1,623,090	+				+0.4
1,623,108	+				-1.3
1,623,108	+				+4.1
1,623,108	+				+0.1
1,623,111	+				-0.2
1,623,111	+				+2.0
1,623,111	+				+1.5
1,623,111	+				+0.3
1,623,111	+				+5.8
1,623,111	+				+1.3
1,623,111	+				-0.3
1,623,111	+				+0.6
1,623,111	+				-1.1
1,623,111	+				-1.0
1,623,111	+				-0.6
1,623,112	-				-1.1
1,623,112	-				-0.3
1,623,112	-				-1.0
1,623,112	-				+0.9
1,623,115	+				-1.7
1,623,115	+				-1.0
1,623,116	-				+0.7
1,623,145	+				-2.6
1,623,145	+				+1.9
1,623,145	+				-2.4
1,623,146	-				-3.0
1,623,146	-				+1.3
1,623,146	-				-1.3
1,623,161	+				+0.4
1,623,162	-				+0.4
1,623,225	+				-0.1
1,623,225	+				-0.9
1,623,225	+				-1.7
1,623,226	-				+0.4
1,623,226	-				-3.8
1,623,229	+				+2.3
1,623,229	+				-1.2
1,623,229	+				+0.5
1,623,230	-				-1.2
1,623,230	-				+0.1
1,623,231	+				+1.3
1,623,231	+				+1.3
1,623,231	+				+0.0
1,623,231	+				-1.8
1,623,231	+				+0.5
1,623,231	+				-2.0
1,623,232	-				+1.5
1,623,232	-				-1.3
1,623,232	-				-2.5
1,623,232	-				-0.9
1,623,232	-				-1.5
1,623,232	-				-0.6
1,623,232	-				+0.3
1,623,232	-				-0.6
1,623,232	-				+0.5
1,623,232	-				+1.1
1,623,232	-				-0.5
1,623,232	-				+0.4
1,623,269	+				+0.3
1,623,269	+				+0.2
1,623,270	-				-0.7
1,623,270	-				-1.6
1,623,270	-				+0.4
1,623,278	+				-2.5
1,623,279	-				-0.4
1,623,298	+				-1.0
1,623,298	+				-0.8
1,623,298	+				+2.1
1,623,298	+				+3.3
1,623,299	-				-1.0
1,623,314	+				+0.8
1,623,315	-				-0.7
1,623,324	-				-1.3
1,623,331	+				+0.3
1,623,361	+				+1.3
1,623,377	+				+1.8
1,623,377	+				-0.4
1,623,377	+				+0.7
1,623,377	+				-0.3
1,623,377	+				+0.5
1,623,377	+				-2.0
1,623,378	-				-1.3
1,623,378	-				+0.7
1,623,378	-				-0.7
1,623,378	-				-1.0
1,623,378	-				+0.1
1,623,378	-				+1.2
1,623,387	+				-0.5
1,623,387	+				-0.3
1,623,388	-				+0.3
1,623,388	-				+0.8
1,623,388	-				+1.5
1,623,427	+				+1.9
1,623,439	+				+2.3
1,623,439	+				-1.5
1,623,439	+				+0.1
1,623,440	-				-2.5
1,623,440	-				-0.6
1,623,472	+				+0.0
1,623,472	+				-0.7
1,623,472	+				-0.6
1,623,473	-				-2.3
1,623,473	-				+1.0
1,623,483	+				-1.7
1,623,483	+				-1.2
1,623,484	-				-0.5
1,623,484	-				+1.0
1,623,547	+				-0.6
1,623,547	+				+0.9
1,623,623	+		Psyr_1434	0.32	-0.4
1,623,623	+		Psyr_1434	0.32	+0.5
1,623,624	-		Psyr_1434	0.32	+2.1
1,623,719	+		Psyr_1434	0.63	-0.0
1,623,720	-		Psyr_1434	0.63	+1.3
1,623,733	-		Psyr_1434	0.67	-0.4
1,623,825	+				-2.3
1,623,825	+				-0.7
1,623,825	+				+0.2
1,623,826	-				-0.0
1,623,826	-				+0.3
1,623,826	-				+1.5
1,623,826	-				+0.7
1,623,827	+				-0.7
1,623,827	+				-1.3
1,623,827	+				+0.5
1,623,827	+				-0.3
1,623,827	+				+1.1
1,623,827	+				-0.6
1,623,827	+				-1.2
1,623,827	+				+0.7
1,623,827	+				+1.4
1,623,828	-				-0.2
1,623,828	-				+0.2
1,623,828	-				-1.5
1,623,828	-				+0.3
1,623,828	-				-3.5
1,623,828	-				+0.0
1,623,828	-				-1.0
1,623,847	+				-1.7
1,623,847	+				-0.0
1,623,848	-				-1.3
1,623,848	-				-0.0
1,623,848	-				+2.9
1,623,848	-				+0.2
1,623,848	-				-2.3
1,623,851	+				+1.3
1,623,851	+				+0.2
1,623,851	+				+2.0
1,623,852	-				+3.5
1,623,852	-				-1.3
1,623,852	-				-0.1
1,623,852	-				+0.3
1,623,852	-				+0.6
1,623,884	+				-1.0
1,623,885	-				+1.3
1,623,885	-				+3.6
1,623,968	+				+1.7
1,623,968	+				-0.6
1,623,969	-				+1.6
1,623,969	-				-0.5
1,624,047	+				+0.6
1,624,047	+				-2.5
1,624,211	-		Psyr_1435	0.25	-0.4
1,624,211	-		Psyr_1435	0.25	+0.0
1,624,273	-		Psyr_1435	0.31	+0.3
1,624,318	+		Psyr_1435	0.36	-1.9
1,624,318	+		Psyr_1435	0.36	-0.3
1,624,318	+		Psyr_1435	0.36	-0.2
1,624,339	+		Psyr_1435	0.38	+0.6
1,624,339	+		Psyr_1435	0.38	+1.1
1,624,339	+		Psyr_1435	0.38	+0.7
1,624,339	+		Psyr_1435	0.38	+0.3
1,624,339	+		Psyr_1435	0.38	+1.7
1,624,339	+		Psyr_1435	0.38	+0.7
1,624,339	+		Psyr_1435	0.38	-0.9
1,624,339	+		Psyr_1435	0.38	-0.7
1,624,339	+		Psyr_1435	0.38	-1.2
1,624,340	-		Psyr_1435	0.38	-1.0
1,624,340	-		Psyr_1435	0.38	+1.2
1,624,340	-		Psyr_1435	0.38	+1.6
1,624,340	-		Psyr_1435	0.38	-0.8
1,624,340	-		Psyr_1435	0.38	+0.9
1,624,340	-		Psyr_1435	0.38	-0.4
1,624,385	+		Psyr_1435	0.43	-1.5
1,624,386	-		Psyr_1435	0.43	+0.7
1,624,402	+		Psyr_1435	0.45	+0.1
1,624,402	+		Psyr_1435	0.45	-1.6
1,624,403	-		Psyr_1435	0.45	+0.3
1,624,455	+		Psyr_1435	0.51	+0.1
1,624,455	+		Psyr_1435	0.51	+0.6
1,624,455	+		Psyr_1435	0.51	+0.4
1,624,456	-		Psyr_1435	0.51	-1.3
1,624,456	-		Psyr_1435	0.51	+2.0
1,624,456	-		Psyr_1435	0.51	+2.0
1,624,456	-		Psyr_1435	0.51	-0.7
1,624,456	-		Psyr_1435	0.51	-1.0
1,624,459	+		Psyr_1435	0.51	+0.6
1,624,459	+		Psyr_1435	0.51	-0.3
1,624,459	+		Psyr_1435	0.51	+0.2
1,624,460	-		Psyr_1435	0.51	+0.5
1,624,460	-		Psyr_1435	0.51	+2.0
1,624,553	+		Psyr_1435	0.61	+0.4
1,624,553	+		Psyr_1435	0.61	-1.2
1,624,553	+		Psyr_1435	0.61	-0.9
1,624,553	+		Psyr_1435	0.61	-0.3
1,624,553	+		Psyr_1435	0.61	-0.7
1,624,553	+		Psyr_1435	0.61	-0.3
1,624,553	+		Psyr_1435	0.61	+0.1
1,624,554	-		Psyr_1435	0.61	+1.7
1,624,554	-		Psyr_1435	0.61	+0.2
1,624,554	-		Psyr_1435	0.61	+0.6
1,624,554	-		Psyr_1435	0.61	+1.6
1,624,723	+		Psyr_1435	0.79	-0.4
1,624,723	+		Psyr_1435	0.79	+4.0
1,624,724	-		Psyr_1435	0.79	+0.2
1,624,724	-		Psyr_1435	0.79	-0.1
1,624,724	-		Psyr_1435	0.79	+0.5
1,624,724	-		Psyr_1435	0.79	+1.8
1,624,754	+		Psyr_1435	0.83	-1.2
1,624,754	+		Psyr_1435	0.83	+3.1
1,624,754	+		Psyr_1435	0.83	-0.7
1,624,761	-		Psyr_1435	0.83	-0.2
1,624,807	-		Psyr_1435	0.88	+0.9
1,624,875	+				-1.9
1,624,875	+				-1.5
1,624,876	-				-2.6
1,624,960	+				-0.4
1,624,970	+				-1.0
1,624,982	+				+1.1
1,624,983	-				-2.5
1,625,018	+				-0.3
1,625,018	+				+0.0
1,625,039	+				-0.1
1,625,039	+				-0.8
1,625,039	+				-0.0
1,625,101	+				+1.2
1,625,102	-				+0.7
1,625,121	+		Psyr_1436	0.11	+2.3
1,625,121	+		Psyr_1436	0.11	-1.4
1,625,122	-		Psyr_1436	0.11	-1.0
1,625,122	-		Psyr_1436	0.11	-1.0
1,625,122	-		Psyr_1436	0.11	+1.5
1,625,204	+		Psyr_1436	0.18	-1.4
1,625,387	+		Psyr_1436	0.32	+0.9
1,625,388	-		Psyr_1436	0.32	+2.1
1,625,388	-		Psyr_1436	0.32	-0.2
1,625,388	-		Psyr_1436	0.32	-3.2
1,625,404	+		Psyr_1436	0.34	+0.6
1,625,404	+		Psyr_1436	0.34	-0.5
1,625,404	+		Psyr_1436	0.34	+0.7
1,625,404	+		Psyr_1436	0.34	-0.8
1,625,405	-		Psyr_1436	0.34	-0.6
1,625,405	-		Psyr_1436	0.34	-1.5
1,625,413	+		Psyr_1436	0.34	-0.1
1,625,413	+		Psyr_1436	0.34	+1.4
1,625,413	+		Psyr_1436	0.34	-1.5
1,625,413	+		Psyr_1436	0.34	-1.0
1,625,413	+		Psyr_1436	0.34	-0.3
1,625,413	+		Psyr_1436	0.34	-0.4
1,625,413	+		Psyr_1436	0.34	+0.4
1,625,414	-		Psyr_1436	0.35	+0.0
1,625,414	-		Psyr_1436	0.35	+0.2
1,625,414	-		Psyr_1436	0.35	+3.8
1,625,414	-		Psyr_1436	0.35	-0.7
1,625,414	-		Psyr_1436	0.35	-0.0
1,625,414	-		Psyr_1436	0.35	-0.6
1,625,550	+		Psyr_1436	0.45	+0.9
1,625,550	+		Psyr_1436	0.45	-0.2
1,625,550	+		Psyr_1436	0.45	+1.6
1,625,550	+		Psyr_1436	0.45	+0.1
1,625,551	-		Psyr_1436	0.46	+0.5
1,625,551	-		Psyr_1436	0.46	+0.8
1,625,551	-		Psyr_1436	0.46	-2.6
1,625,551	-		Psyr_1436	0.46	+0.4
1,625,551	-		Psyr_1436	0.46	-0.4
1,625,601	+		Psyr_1436	0.50	-0.0
1,625,601	+		Psyr_1436	0.50	+2.9
1,625,601	+		Psyr_1436	0.50	+1.3
1,625,601	+		Psyr_1436	0.50	-1.5
1,625,601	+		Psyr_1436	0.50	+0.9
1,625,601	+		Psyr_1436	0.50	+1.7
1,625,601	+		Psyr_1436	0.50	+2.0
1,625,601	+		Psyr_1436	0.50	-0.7
1,625,601	+		Psyr_1436	0.50	+0.0
1,625,602	-		Psyr_1436	0.50	-0.1
1,625,602	-		Psyr_1436	0.50	-0.1
1,625,602	-		Psyr_1436	0.50	+0.4
1,625,602	-		Psyr_1436	0.50	-1.3
1,625,602	-		Psyr_1436	0.50	+1.9
1,625,602	-		Psyr_1436	0.50	-1.0
1,625,602	-		Psyr_1436	0.50	-0.9
1,625,602	-		Psyr_1436	0.50	+1.9
1,625,602	-		Psyr_1436	0.50	-2.3
1,625,602	-		Psyr_1436	0.50	-0.5
1,625,621	+		Psyr_1436	0.51	+2.1
1,625,621	+		Psyr_1436	0.51	-1.0
1,625,622	-		Psyr_1436	0.51	-0.4
1,625,671	+		Psyr_1436	0.55	-1.7
1,625,672	-		Psyr_1436	0.55	+1.3
1,625,829	+		Psyr_1436	0.68	+0.1
1,625,829	+		Psyr_1436	0.68	+2.7
1,625,830	-		Psyr_1436	0.68	-2.1
1,625,830	-		Psyr_1436	0.68	+0.7
1,625,830	-				+0.7
1,625,830	-		Psyr_1436	0.68	-1.2
1,625,830	-		Psyr_1436	0.68	-0.7
1,625,859	+		Psyr_1436	0.70	-0.9
1,625,870	+		Psyr_1436	0.71	+0.4
1,625,870	+		Psyr_1436	0.71	+1.6
1,625,870	+		Psyr_1436	0.71	-0.5
1,625,870	+		Psyr_1436	0.71	+0.1
1,625,870	+		Psyr_1436	0.71	+0.1
1,625,871	-		Psyr_1436	0.71	-1.7
1,625,871	-		Psyr_1436	0.71	+0.0
1,625,871	-		Psyr_1436	0.71	-0.6
1,625,871	-		Psyr_1436	0.71	+0.2
1,625,871	-		Psyr_1436	0.71	+0.8
1,625,871	-		Psyr_1436	0.71	+0.3
1,625,871	-		Psyr_1436	0.71	+0.2
1,625,871	-		Psyr_1436	0.71	+3.2