Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1313

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,489,868	+				+0.3
1,489,868	+				+0.3
1,489,868	+				+0.2
1,489,868	+				+0.0
1,489,868	+				+0.3
1,489,868	+				+1.6
1,489,869	-				+0.1
1,489,869	-				+0.3
1,489,869	-				+1.4
1,489,869	-				+1.1
1,489,869	-				+0.8
1,489,869	-				+0.7
1,489,870	+				-0.5
1,489,871	-				-0.8
1,489,871	-				+0.7
1,489,871	-				+1.0
1,489,871	-				+0.9
1,489,943	+				+0.0
1,489,943	+				-1.2
1,489,943	+				+0.2
1,489,944	-				-2.9
1,489,944	-				+1.3
1,489,944	-				+1.0
1,489,944	-				-0.2
1,490,096	+		Psyr_1312	0.29	+0.0
1,490,096	+		Psyr_1312	0.29	-0.5
1,490,096	+		Psyr_1312	0.29	-0.8
1,490,097	-		Psyr_1312	0.29	+1.1
1,490,097	-		Psyr_1312	0.29	+2.9
1,490,097	-		Psyr_1312	0.29	+1.6
1,490,097	-		Psyr_1312	0.29	+2.8
1,490,097	-		Psyr_1312	0.29	+1.3
1,490,097	-		Psyr_1312	0.29	+0.6
1,490,097	-		Psyr_1312	0.29	+0.2
1,490,099	+		Psyr_1312	0.30	-0.5
1,490,099	+		Psyr_1312	0.30	+0.1
1,490,099	+				+0.9
1,490,099	+		Psyr_1312	0.30	+0.7
1,490,099	+		Psyr_1312	0.30	+1.1
1,490,099	+		Psyr_1312	0.30	+0.4
1,490,100	-		Psyr_1312	0.30	-1.0
1,490,100	-		Psyr_1312	0.30	-0.0
1,490,100	-		Psyr_1312	0.30	-0.2
1,490,100	-		Psyr_1312	0.30	+0.4
1,490,100	-		Psyr_1312	0.30	-0.5
1,490,100	-		Psyr_1312	0.30	+0.6
1,490,100	-		Psyr_1312	0.30	+0.6
1,490,100	-		Psyr_1312	0.30	+0.5
1,490,100	-		Psyr_1312	0.30	+0.7
1,490,144	+		Psyr_1312	0.36	-0.8
1,490,144	+		Psyr_1312	0.36	-0.1
1,490,144	+		Psyr_1312	0.36	-0.4
1,490,144	+		Psyr_1312	0.36	+0.3
1,490,144	+		Psyr_1312	0.36	+0.3
1,490,144	+		Psyr_1312	0.36	+0.2
1,490,145	-		Psyr_1312	0.36	+0.1
1,490,145	-		Psyr_1312	0.36	+0.8
1,490,145	-		Psyr_1312	0.36	-1.2
1,490,145	-		Psyr_1312	0.36	+2.1
1,490,145	-		Psyr_1312	0.36	+1.0
1,490,145	-		Psyr_1312	0.36	+0.2
1,490,145	-		Psyr_1312	0.36	+0.7
1,490,145	-		Psyr_1312	0.36	-0.2
1,490,148	+		Psyr_1312	0.37	+0.3
1,490,148	+		Psyr_1312	0.37	+0.6
1,490,148	+		Psyr_1312	0.37	+1.3
1,490,148	+		Psyr_1312	0.37	+0.4
1,490,148	+		Psyr_1312	0.37	+1.6
1,490,149	-		Psyr_1312	0.37	-0.7
1,490,149	-		Psyr_1312	0.37	+1.3
1,490,149	-		Psyr_1312	0.37	+0.0
1,490,149	-		Psyr_1312	0.37	+3.1
1,490,149	-		Psyr_1312	0.37	-0.5
1,490,197	+		Psyr_1312	0.43	-0.6
1,490,197	+		Psyr_1312	0.43	+0.3
1,490,197	+		Psyr_1312	0.43	+3.5
1,490,198	-		Psyr_1312	0.43	+0.4
1,490,198	-		Psyr_1312	0.43	+3.0
1,490,198	-		Psyr_1312	0.43	+0.6
1,490,198	-		Psyr_1312	0.43	+1.4
1,490,272	+		Psyr_1312	0.54	+0.2
1,490,273	-		Psyr_1312	0.54	-1.2
1,490,273	-		Psyr_1312	0.54	+1.4
1,490,288	-		Psyr_1312	0.56	+1.9
1,490,318	+		Psyr_1312	0.60	+0.1
1,490,318	+		Psyr_1312	0.60	+0.6
1,490,319	-		Psyr_1312	0.60	-0.2
1,490,342	+		Psyr_1312	0.63	-0.2
1,490,342	+		Psyr_1312	0.63	+0.9
1,490,343	-		Psyr_1312	0.63	-1.7
1,490,343	-		Psyr_1312	0.63	+0.0
1,490,343	-		Psyr_1312	0.63	+0.5
1,490,343	-		Psyr_1312	0.63	-0.2
1,490,434	-		Psyr_1312	0.76	+1.0
1,490,499	-		Psyr_1312	0.85	+0.8
1,490,610	+				+0.5
1,490,610	+				+0.3
1,490,610	+				+0.3
1,490,610	+				+0.0
1,490,611	-				+1.6
1,490,611	-				-1.7
1,490,611	-				+0.1
1,490,611	-				+1.8
1,490,611	-				+0.3
1,490,612	+				-0.2
1,490,612	+				+1.3
1,490,612	+				-0.0
1,490,612	+				+0.0
1,490,612	+				+0.5
1,490,612	+				+0.5
1,490,613	-				-0.7
1,490,613	-				-0.9
1,490,613	-				-2.0
1,490,613	-				-1.8
1,490,675	-				+2.3
1,490,675	-				-1.2
1,490,678	+				+0.6
1,490,752	+				+0.9
1,490,752	+				+0.5
1,490,763	+				-0.6
1,490,763	+				+1.0
1,490,764	-				+0.6
1,490,764	-				-0.1
1,490,764	-				-2.4
1,490,826	+				-2.0
1,490,826	+				+1.4
1,490,827	-				-0.2
1,490,827	-				+0.9
1,490,827	-				-1.3
1,490,827	-				-0.2
1,490,899	+		Psyr_1313	0.12	-0.2
1,490,902	+		Psyr_1313	0.12	+0.9
1,491,051	+		Psyr_1313	0.24	-1.7
1,491,051	+		Psyr_1313	0.24	-0.3
1,491,051	+		Psyr_1313	0.24	+1.3
1,491,052	-		Psyr_1313	0.24	-0.6
1,491,052	-		Psyr_1313	0.24	-0.6
1,491,052	-		Psyr_1313	0.24	+0.1
1,491,052	-		Psyr_1313	0.24	-1.1
1,491,052	-		Psyr_1313	0.24	+3.1
1,491,103	+		Psyr_1313	0.28	-1.8
1,491,175	+		Psyr_1313	0.34	+0.1
1,491,352	+		Psyr_1313	0.48	+0.1
1,491,353	-		Psyr_1313	0.48	+1.4
1,491,353	-		Psyr_1313	0.48	-1.8
1,491,353	-		Psyr_1313	0.48	-0.1
1,491,353	-		Psyr_1313	0.48	-0.9
1,491,353	-		Psyr_1313	0.48	+1.3
1,491,353	-		Psyr_1313	0.48	+1.3
1,491,353	-		Psyr_1313	0.48	+1.8
1,491,395	+		Psyr_1313	0.51	-3.2
1,491,395	+		Psyr_1313	0.51	-1.8
1,491,395	+		Psyr_1313	0.51	-2.6
1,491,396	-		Psyr_1313	0.51	-0.0
1,491,396	-		Psyr_1313	0.51	+1.4
1,491,396	-		Psyr_1313	0.51	+1.4
1,491,396	-		Psyr_1313	0.51	+1.2
1,491,396	-		Psyr_1313	0.51	+0.1
1,491,396	-		Psyr_1313	0.51	-1.7
1,491,396	-		Psyr_1313	0.51	+0.0
1,491,677	-		Psyr_1313	0.73	+0.8
1,491,677	-		Psyr_1313	0.73	-0.9
1,491,746	-		Psyr_1313	0.78	+0.1
1,491,770	-		Psyr_1313	0.80	-0.2
1,491,770	-		Psyr_1313	0.80	+3.5
1,491,770	-		Psyr_1313	0.80	-1.2
1,491,775	+		Psyr_1313	0.81	+1.3
1,491,775	+		Psyr_1313	0.81	+0.6
1,491,775	+		Psyr_1313	0.81	+0.3
1,491,775	+		Psyr_1313	0.81	+0.6
1,491,775	+		Psyr_1313	0.81	-1.7
1,491,775	+		Psyr_1313	0.81	+1.3
1,491,775	+		Psyr_1313	0.81	-1.0
1,491,776	-		Psyr_1313	0.81	+0.8
1,491,776	-		Psyr_1313	0.81	-1.1
1,491,776	-		Psyr_1313	0.81	+0.2
1,491,776	-		Psyr_1313	0.81	-1.1
1,491,776	-		Psyr_1313	0.81	+0.5
1,491,853	-		Psyr_1313	0.87	+1.0
1,491,853	-		Psyr_1313	0.87	-1.7
1,491,853	-		Psyr_1313	0.87	+1.2
1,491,853	-		Psyr_1313	0.87	+2.5
1,491,859	-		Psyr_1313	0.87	+0.9
1,491,904	+				+3.1
1,491,905	-				+0.0
1,491,905	-				+0.1
1,492,003	+				-1.8
1,492,018	+				-2.2
1,492,018	+				+1.2
1,492,019	-				-0.2
1,492,101	+				+0.3
1,492,101	+				+0.9
1,492,101	+				-0.2
1,492,101	+				+0.7
1,492,101	+				-1.3
1,492,102	-				-1.5
1,492,102	-				-0.8
1,492,102	-				+1.2
1,492,102	-				-1.3
1,492,102	-				-1.7
1,492,102	-				+1.4
1,492,102	-				+0.2
1,492,125	-				+0.3
1,492,125	-				-1.5
1,492,125	-				+0.1
1,492,125	-				+0.8
1,492,125	-				+0.3
1,492,125	-				+0.4
1,492,287	+				-1.0
1,492,287	+				-2.4
1,492,335	+		Psyr_1314	0.12	-0.2
1,492,421	+		Psyr_1314	0.22	-1.7
1,492,569	+		Psyr_1314	0.38	-0.7
1,492,569	+		Psyr_1314	0.38	-0.3
1,492,677	+		Psyr_1314	0.51	+3.3
1,492,677	+		Psyr_1314	0.51	+1.3
1,492,677	+		Psyr_1314	0.51	+0.8
1,492,678	-		Psyr_1314	0.51	+1.0
1,492,747	-		Psyr_1314	0.58	+0.3
1,492,935	+		Psyr_1314	0.79	+2.1
1,492,935	+		Psyr_1314	0.79	-0.5
1,492,935	+		Psyr_1314	0.79	+0.8
1,492,936	-		Psyr_1314	0.79	+0.2