Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1174

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1172 and Psyr_1173 are separated by 172 nucleotidesPsyr_1173 and Psyr_1174 are separated by 48 nucleotidesPsyr_1174 and Psyr_1175 are separated by 410 nucleotides Psyr_1172: Psyr_1172 - transcriptional regulator, AsnC family, at 1,326,317 to 1,326,796 _1172 Psyr_1173: Psyr_1173 - Lysine exporter protein (LYSE/YGGA), at 1,326,969 to 1,327,589 _1173 Psyr_1174: Psyr_1174 - Sugar transporter, at 1,327,638 to 1,329,059 _1174 Psyr_1175: Psyr_1175 - Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal, at 1,329,470 to 1,330,096 _1175 Position (kb) 1327 1328 1329 1330Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1326.645 kb on + strand, within Psyr_1172at 1326.645 kb on + strand, within Psyr_1172at 1326.645 kb on + strand, within Psyr_1172at 1326.645 kb on + strand, within Psyr_1172at 1326.646 kb on - strand, within Psyr_1172at 1326.646 kb on - strand, within Psyr_1172at 1326.731 kb on - strand, within Psyr_1172at 1326.764 kb on + strandat 1326.764 kb on + strandat 1326.764 kb on + strandat 1326.764 kb on + strandat 1326.764 kb on + strandat 1326.764 kb on + strandat 1326.764 kb on + strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.765 kb on - strandat 1326.770 kb on + strandat 1326.779 kb on + strandat 1326.796 kb on + strandat 1326.797 kb on - strandat 1326.797 kb on - strandat 1326.853 kb on - strandat 1326.889 kb on + strandat 1326.992 kb on + strandat 1326.992 kb on + strandat 1326.992 kb on + strandat 1326.992 kb on + strandat 1326.993 kb on - strandat 1326.993 kb on - strandat 1326.993 kb on - strandat 1326.993 kb on - strandat 1326.993 kb on - strandat 1326.993 kb on - strandat 1326.996 kb on + strandat 1327.128 kb on + strand, within Psyr_1173at 1327.128 kb on + strand, within Psyr_1173at 1327.129 kb on - strand, within Psyr_1173at 1327.129 kb on - strand, within Psyr_1173at 1327.144 kb on + strand, within Psyr_1173at 1327.193 kb on - strand, within Psyr_1173at 1327.215 kb on + strand, within Psyr_1173at 1327.216 kb on - strand, within Psyr_1173at 1327.225 kb on - strand, within Psyr_1173at 1327.264 kb on + strand, within Psyr_1173at 1327.264 kb on + strand, within Psyr_1173at 1327.265 kb on - strand, within Psyr_1173at 1327.265 kb on - strand, within Psyr_1173at 1327.265 kb on - strand, within Psyr_1173at 1327.328 kb on + strand, within Psyr_1173at 1327.328 kb on + strand, within Psyr_1173at 1327.328 kb on + strand, within Psyr_1173at 1327.329 kb on - strand, within Psyr_1173at 1327.359 kb on + strand, within Psyr_1173at 1327.359 kb on + strand, within Psyr_1173at 1327.360 kb on - strand, within Psyr_1173at 1327.447 kb on + strand, within Psyr_1173at 1327.474 kb on + strand, within Psyr_1173at 1327.475 kb on - strand, within Psyr_1173at 1327.475 kb on - strand, within Psyr_1173at 1327.475 kb on - strand, within Psyr_1173at 1327.639 kb on + strandat 1327.957 kb on + strand, within Psyr_1174at 1327.957 kb on + strand, within Psyr_1174at 1327.957 kb on + strand, within Psyr_1174at 1327.957 kb on + strand, within Psyr_1174at 1327.957 kb on + strand, within Psyr_1174at 1327.958 kb on - strand, within Psyr_1174at 1327.958 kb on - strand, within Psyr_1174at 1328.182 kb on + strand, within Psyr_1174at 1328.182 kb on + strand, within Psyr_1174at 1328.182 kb on + strand, within Psyr_1174at 1328.183 kb on - strand, within Psyr_1174at 1328.183 kb on - strand, within Psyr_1174at 1328.185 kb on + strand, within Psyr_1174at 1328.185 kb on + strand, within Psyr_1174at 1328.185 kb on + strand, within Psyr_1174at 1328.185 kb on + strand, within Psyr_1174at 1328.185 kb on + strandat 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.186 kb on - strand, within Psyr_1174at 1328.232 kb on + strand, within Psyr_1174at 1328.232 kb on + strand, within Psyr_1174at 1328.233 kb on - strand, within Psyr_1174at 1328.233 kb on - strand, within Psyr_1174at 1328.433 kb on + strand, within Psyr_1174at 1328.444 kb on + strand, within Psyr_1174at 1328.445 kb on - strand, within Psyr_1174at 1328.445 kb on - strand, within Psyr_1174at 1328.445 kb on - strand, within Psyr_1174at 1328.445 kb on - strand, within Psyr_1174at 1328.445 kb on - strand, within Psyr_1174at 1328.448 kb on + strand, within Psyr_1174at 1328.449 kb on - strand, within Psyr_1174at 1328.449 kb on - strand, within Psyr_1174at 1328.449 kb on - strand, within Psyr_1174at 1328.491 kb on + strand, within Psyr_1174at 1328.491 kb on + strand, within Psyr_1174at 1328.492 kb on - strand, within Psyr_1174at 1328.492 kb on - strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.511 kb on - strand, within Psyr_1174at 1328.511 kb on - strand, within Psyr_1174at 1328.511 kb on - strand, within Psyr_1174at 1328.511 kb on - strand, within Psyr_1174at 1328.545 kb on + strand, within Psyr_1174at 1328.545 kb on + strand, within Psyr_1174at 1328.545 kb on + strand, within Psyr_1174at 1328.545 kb on + strand, within Psyr_1174at 1328.545 kb on + strand, within Psyr_1174at 1328.545 kb on + strand, within Psyr_1174at 1328.546 kb on - strand, within Psyr_1174at 1328.546 kb on - strand, within Psyr_1174at 1328.763 kb on + strand, within Psyr_1174at 1328.795 kb on + strand, within Psyr_1174at 1328.795 kb on + strand, within Psyr_1174at 1328.796 kb on - strand, within Psyr_1174at 1328.797 kb on + strand, within Psyr_1174at 1328.797 kb on + strand, within Psyr_1174at 1328.797 kb on + strand, within Psyr_1174at 1328.798 kb on - strand, within Psyr_1174at 1328.864 kb on - strand, within Psyr_1174at 1328.864 kb on - strand, within Psyr_1174at 1328.864 kb on - strand, within Psyr_1174at 1328.985 kb on - strandat 1328.985 kb on - strandat 1329.047 kb on + strandat 1329.047 kb on + strandat 1329.048 kb on - strandat 1329.048 kb on - strandat 1329.050 kb on + strandat 1329.050 kb on + strandat 1329.050 kb on + strandat 1329.050 kb on + strandat 1329.050 kb on + strandat 1329.050 kb on + strandat 1329.050 kb on + strandat 1329.051 kb on - strandat 1329.051 kb on - strandat 1329.051 kb on - strandat 1329.051 kb on - strandat 1329.051 kb on - strandat 1329.051 kb on - strandat 1329.051 kb on - strandat 1329.051 kb on - strandat 1329.051 kb on - strandat 1329.051 kb on - strandat 1329.099 kb on + strandat 1329.099 kb on + strandat 1329.099 kb on + strandat 1329.100 kb on - strandat 1329.100 kb on - strandat 1329.100 kb on - strandat 1329.137 kb on - strandat 1329.144 kb on + strandat 1329.206 kb on + strandat 1329.398 kb on + strandat 1329.399 kb on - strandat 1329.511 kb on + strandat 1329.511 kb on + strandat 1329.511 kb on + strandat 1329.736 kb on + strand, within Psyr_1175at 1329.736 kb on + strand, within Psyr_1175at 1329.740 kb on + strand, within Psyr_1175at 1329.741 kb on - strand, within Psyr_1175at 1329.749 kb on + strand, within Psyr_1175at 1329.749 kb on + strand, within Psyr_1175at 1329.750 kb on - strand, within Psyr_1175at 1329.750 kb on - strand, within Psyr_1175at 1329.750 kb on - strand, within Psyr_1175at 1329.809 kb on + strand, within Psyr_1175at 1329.875 kb on + strand, within Psyr_1175at 1329.875 kb on + strand, within Psyr_1175at 1329.875 kb on + strand, within Psyr_1175at 1329.875 kb on + strand, within Psyr_1175at 1329.876 kb on - strand, within Psyr_1175at 1329.876 kb on - strand, within Psyr_1175at 1329.876 kb on - strand, within Psyr_1175at 1329.914 kb on + strand, within Psyr_1175

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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1,326,645 + Psyr_1172 0.68 -1.0
1,326,645 + Psyr_1172 0.68 -0.1
1,326,645 + Psyr_1172 0.68 -0.6
1,326,645 + Psyr_1172 0.68 -0.6
1,326,646 - Psyr_1172 0.69 +1.2
1,326,646 - Psyr_1172 0.69 -0.5
1,326,731 - Psyr_1172 0.86 +0.8
1,326,764 + +0.8
1,326,764 + +1.4
1,326,764 + -0.6
1,326,764 + -1.3
1,326,764 + +1.4
1,326,764 + +1.8
1,326,764 + +4.0
1,326,765 - -1.1
1,326,765 - +1.8
1,326,765 - -3.4
1,326,765 - +1.3
1,326,765 - +0.7
1,326,765 - +0.4
1,326,765 - -0.6
1,326,765 - +0.7
1,326,765 - +1.0
1,326,765 - +0.2
1,326,765 - -2.2
1,326,770 + -0.4
1,326,779 + -0.1
1,326,796 + -0.3
1,326,797 - +1.4
1,326,797 - +0.6
1,326,853 - -0.8
1,326,889 + -1.7
1,326,992 + -0.8
1,326,992 + -0.6
1,326,992 + +0.3
1,326,992 + +3.0
1,326,993 - -1.8
1,326,993 - +1.0
1,326,993 - -0.6
1,326,993 - +3.4
1,326,993 - +0.8
1,326,993 - +0.2
1,326,996 + +0.8
1,327,128 + Psyr_1173 0.26 -1.9
1,327,128 + Psyr_1173 0.26 -1.0
1,327,129 - Psyr_1173 0.26 +0.1
1,327,129 - Psyr_1173 0.26 -0.2
1,327,144 + Psyr_1173 0.28 +0.6
1,327,193 - Psyr_1173 0.36 -0.9
1,327,215 + Psyr_1173 0.40 -0.7
1,327,216 - Psyr_1173 0.40 +1.0
1,327,225 - Psyr_1173 0.41 +0.4
1,327,264 + Psyr_1173 0.48 +0.2
1,327,264 + Psyr_1173 0.48 +0.1
1,327,265 - Psyr_1173 0.48 -0.8
1,327,265 - Psyr_1173 0.48 +0.6
1,327,265 - Psyr_1173 0.48 +0.1
1,327,328 + Psyr_1173 0.58 -0.2
1,327,328 + Psyr_1173 0.58 +1.7
1,327,328 + Psyr_1173 0.58 -0.9
1,327,329 - Psyr_1173 0.58 +1.4
1,327,359 + Psyr_1173 0.63 -2.2
1,327,359 + Psyr_1173 0.63 +0.5
1,327,360 - Psyr_1173 0.63 -2.9
1,327,447 + Psyr_1173 0.77 -1.7
1,327,474 + Psyr_1173 0.81 -0.0
1,327,475 - Psyr_1173 0.81 +1.1
1,327,475 - Psyr_1173 0.81 +1.4
1,327,475 - Psyr_1173 0.81 -2.1
1,327,639 + -0.8
1,327,957 + Psyr_1174 0.22 -0.3
1,327,957 + Psyr_1174 0.22 -0.4
1,327,957 + Psyr_1174 0.22 -0.9
1,327,957 + Psyr_1174 0.22 +0.6
1,327,957 + Psyr_1174 0.22 +0.7
1,327,958 - Psyr_1174 0.23 +0.5
1,327,958 - Psyr_1174 0.23 +1.1
1,328,182 + Psyr_1174 0.38 +0.1
1,328,182 + Psyr_1174 0.38 -0.1
1,328,182 + Psyr_1174 0.38 +1.5
1,328,183 - Psyr_1174 0.38 -0.3
1,328,183 - Psyr_1174 0.38 +0.4
1,328,185 + Psyr_1174 0.38 -0.7
1,328,185 + Psyr_1174 0.38 +0.3
1,328,185 + Psyr_1174 0.38 +1.4
1,328,185 + Psyr_1174 0.38 -1.5
1,328,185 + +0.4
1,328,186 - Psyr_1174 0.39 -0.2
1,328,186 - Psyr_1174 0.39 +0.0
1,328,186 - Psyr_1174 0.39 +0.6
1,328,186 - Psyr_1174 0.39 -2.5
1,328,186 - Psyr_1174 0.39 +2.4
1,328,186 - Psyr_1174 0.39 -0.2
1,328,186 - Psyr_1174 0.39 -2.6
1,328,186 - Psyr_1174 0.39 -2.4
1,328,232 + Psyr_1174 0.42 -0.2
1,328,232 + Psyr_1174 0.42 +0.9
1,328,233 - Psyr_1174 0.42 -0.4
1,328,233 - Psyr_1174 0.42 -1.0
1,328,433 + Psyr_1174 0.56 +1.9
1,328,444 + Psyr_1174 0.57 +0.4
1,328,445 - Psyr_1174 0.57 +0.2
1,328,445 - Psyr_1174 0.57 +1.1
1,328,445 - Psyr_1174 0.57 +0.4
1,328,445 - Psyr_1174 0.57 +2.6
1,328,445 - Psyr_1174 0.57 +1.5
1,328,448 + Psyr_1174 0.57 +0.4
1,328,449 - Psyr_1174 0.57 +1.2
1,328,449 - Psyr_1174 0.57 +0.3
1,328,449 - Psyr_1174 0.57 -0.0
1,328,491 + Psyr_1174 0.60 +0.6
1,328,491 + Psyr_1174 0.60 -0.0
1,328,492 - Psyr_1174 0.60 +0.7
1,328,492 - Psyr_1174 0.60 +0.4
1,328,510 + Psyr_1174 0.61 +1.6
1,328,510 + Psyr_1174 0.61 -0.4
1,328,510 + Psyr_1174 0.61 -0.2
1,328,510 + Psyr_1174 0.61 +0.9
1,328,510 + Psyr_1174 0.61 +1.0
1,328,510 + Psyr_1174 0.61 +1.4
1,328,510 + Psyr_1174 0.61 -0.1
1,328,511 - Psyr_1174 0.61 -0.4
1,328,511 - Psyr_1174 0.61 -1.6
1,328,511 - Psyr_1174 0.61 -1.2
1,328,511 - Psyr_1174 0.61 -0.6
1,328,545 + Psyr_1174 0.64 +1.0
1,328,545 + Psyr_1174 0.64 -1.3
1,328,545 + Psyr_1174 0.64 -0.6
1,328,545 + Psyr_1174 0.64 +0.1
1,328,545 + Psyr_1174 0.64 -1.9
1,328,545 + Psyr_1174 0.64 +0.7
1,328,546 - Psyr_1174 0.64 +1.0
1,328,546 - Psyr_1174 0.64 -2.1
1,328,763 + Psyr_1174 0.79 +1.4
1,328,795 + Psyr_1174 0.81 +0.0
1,328,795 + Psyr_1174 0.81 +2.2
1,328,796 - Psyr_1174 0.81 -0.2
1,328,797 + Psyr_1174 0.82 +1.0
1,328,797 + Psyr_1174 0.82 +0.0
1,328,797 + Psyr_1174 0.82 +2.1
1,328,798 - Psyr_1174 0.82 -0.5
1,328,864 - Psyr_1174 0.86 +0.1
1,328,864 - Psyr_1174 0.86 -1.6
1,328,864 - Psyr_1174 0.86 +0.3
1,328,985 - -1.4
1,328,985 - -0.9
1,329,047 + +1.4
1,329,047 + -1.4
1,329,048 - +0.4
1,329,048 - -0.4
1,329,050 + -0.6
1,329,050 + +1.9
1,329,050 + +0.3
1,329,050 + -1.6
1,329,050 + +2.0
1,329,050 + +0.1
1,329,050 + +0.4
1,329,051 - +0.2
1,329,051 - -0.3
1,329,051 - +0.7
1,329,051 - -1.9
1,329,051 - +0.2
1,329,051 - -0.2
1,329,051 - +0.5
1,329,051 - +0.6
1,329,051 - -1.8
1,329,051 - -0.2
1,329,099 + +0.2
1,329,099 + +0.4
1,329,099 + +0.8
1,329,100 - +0.5
1,329,100 - -1.2
1,329,100 - -1.5
1,329,137 - -1.5
1,329,144 + +0.8
1,329,206 + +1.0
1,329,398 + -0.9
1,329,399 - +0.1
1,329,511 + +2.9
1,329,511 + +0.2
1,329,511 + -0.2
1,329,736 + Psyr_1175 0.42 -0.2
1,329,736 + Psyr_1175 0.42 +1.7
1,329,740 + Psyr_1175 0.43 +0.0
1,329,741 - Psyr_1175 0.43 -0.6
1,329,749 + Psyr_1175 0.44 -1.8
1,329,749 + Psyr_1175 0.44 -1.4
1,329,750 - Psyr_1175 0.45 -0.1
1,329,750 - Psyr_1175 0.45 +1.0
1,329,750 - Psyr_1175 0.45 +0.4
1,329,809 + Psyr_1175 0.54 +0.9
1,329,875 + Psyr_1175 0.65 +0.4
1,329,875 + Psyr_1175 0.65 +0.7
1,329,875 + Psyr_1175 0.65 -0.2
1,329,875 + Psyr_1175 0.65 +1.5
1,329,876 - Psyr_1175 0.65 -1.1
1,329,876 - Psyr_1175 0.65 +0.7
1,329,876 - Psyr_1175 0.65 -2.8
1,329,914 + Psyr_1175 0.71 +0.6

Or see this region's nucleotide sequence