Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1013

Experiment: epiphytic; Green bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Green bean
1,146,663	+		Psyr_1012	0.42	+0.7
1,146,664	-		Psyr_1012	0.42	+0.4
1,146,944	+		Psyr_1012	0.65	-0.7
1,146,945	-		Psyr_1012	0.65	-0.5
1,146,945	-		Psyr_1012	0.65	+0.3
1,146,980	+		Psyr_1012	0.68	-2.7
1,146,980	+		Psyr_1012	0.68	+0.3
1,146,990	+		Psyr_1012	0.68	-0.1
1,146,990	+		Psyr_1012	0.68	-1.1
1,146,990	+		Psyr_1012	0.68	-3.1
1,146,990	+		Psyr_1012	0.68	+0.7
1,146,991	-		Psyr_1012	0.69	+0.2
1,146,991	-		Psyr_1012	0.69	-1.0
1,146,991	-		Psyr_1012	0.69	+0.2
1,146,991	-		Psyr_1012	0.69	+0.4
1,146,991	-		Psyr_1012	0.69	+0.1
1,146,993	-		Psyr_1012	0.69	+1.0
1,146,993	-		Psyr_1012	0.69	+0.6
1,146,993	-		Psyr_1012	0.69	-0.7
1,147,091	+		Psyr_1012	0.77	-0.1
1,147,091	+		Psyr_1012	0.77	+1.7
1,147,091	+		Psyr_1012	0.77	-0.3
1,147,092	-		Psyr_1012	0.77	+0.9
1,147,092	-		Psyr_1012	0.77	-0.9
1,147,092	-		Psyr_1012	0.77	+0.2
1,147,092	-		Psyr_1012	0.77	-1.4
1,147,092	-		Psyr_1012	0.77	-0.6
1,147,092	-		Psyr_1012	0.77	+0.3
1,147,092	-		Psyr_1012	0.77	+1.4
1,147,092	-		Psyr_1012	0.77	+0.2
1,147,333	-				-0.4
1,147,359	+				+1.4
1,147,394	+				+0.2
1,147,394	+				+1.5
1,147,395	-				+1.1
1,147,405	+				+0.1
1,147,416	+				-2.3
1,147,416	+				+0.8
1,147,435	-				-0.5
1,147,479	+				+0.0
1,147,483	+				+1.1
1,147,483	+				+1.3
1,147,484	-				-0.5
1,147,484	-				-1.0
1,147,484	-				-0.3
1,147,484	-				-0.1
1,147,484	-				-1.4
1,147,484	-				-0.1
1,147,486	+				+1.3
1,147,486	+				+1.3
1,147,486	+				-0.8
1,147,486	+				+1.5
1,147,487	-				-0.4
1,147,498	+				+0.1
1,147,498	+				+0.9
1,147,498	+				-2.8
1,147,498	+				+1.3
1,147,498	+				-1.1
1,147,499	-				+1.0
1,147,499	-				-1.7
1,147,540	+				-2.4
1,147,540	+				+0.7
1,147,541	-				+0.7
1,147,541	-				-0.5
1,147,541	-				+1.1
1,147,596	+		Psyr_1013	0.13	-0.1
1,147,597	-		Psyr_1013	0.13	-1.8
1,147,597	-		Psyr_1013	0.13	-0.4
1,147,651	-		Psyr_1013	0.30	-0.3
1,147,808	+		Psyr_1013	0.79	-0.6
1,147,858	+				+0.6
1,147,858	+				-1.0
1,147,859	-				-1.1
1,147,900	-				-0.6
1,147,900	-				+1.9
1,147,903	+				+0.6
1,147,903	+				-0.3
1,147,904	-				+4.2
1,147,907	-				+1.9
1,147,921	+				+0.8
1,147,940	-				+0.2
1,147,957	+				+0.7
1,147,957	+				-1.4
1,147,957	+				+0.3
1,147,957	+				+1.3
1,147,957	+				-0.2
1,147,958	-				+0.3
1,147,984	-				-0.3
1,148,054	-				-1.8
1,148,055	+				-0.4
1,148,055	+				-1.1
1,148,055	+				-0.5
1,148,055	+				+0.5
1,148,056	-				-2.0
1,148,056	-				-1.4
1,148,056	-				+0.7
1,148,057	+				-1.9
1,148,057	+				+0.4
1,148,057	+				+0.2
1,148,057	+				-0.6
1,148,058	-				+1.1
1,148,058	-				-2.0
1,148,058	-				-0.3
1,148,080	+				-0.8
1,148,080	+				-1.4
1,148,081	-				+0.4
1,148,081	-				-0.0
1,148,081	-				-2.8
1,148,082	+				+1.1
1,148,082	+				-2.3
1,148,082	+				-0.2
1,148,082	+				-0.7
1,148,082	+				-0.7
1,148,082	+				+1.2
1,148,082	+				+0.1
1,148,082	+				-2.1
1,148,083	-				-0.7
1,148,083	-				-1.1
1,148,083	-				+0.7
1,148,083	-				-0.9
1,148,083	-				-0.0
1,148,083	-				+0.9
1,148,083	-				-1.4
1,148,083	-				+1.7
1,148,084	+				+0.4
1,148,084	+				-1.7
1,148,084	+				-0.7
1,148,084	+				+0.6
1,148,084	+				+0.6
1,148,085	-				+0.1
1,148,091	-				-0.6
1,148,128	+				+0.4
1,148,129	-				-0.1
1,148,161	+				-0.5
1,148,274	+		Psyr_1014	0.24	-0.2
1,148,275	-		Psyr_1014	0.24	+0.9
1,148,280	+		Psyr_1014	0.26	+1.4
1,148,281	-		Psyr_1014	0.26	-0.3
1,148,316	+		Psyr_1014	0.36	+0.1
1,148,316	+		Psyr_1014	0.36	+0.2
1,148,418	+		Psyr_1014	0.66	+1.0
1,148,418	+		Psyr_1014	0.66	+4.0
1,148,418	+		Psyr_1014	0.66	+0.6
1,148,418	+		Psyr_1014	0.66	+1.3
1,148,418	+		Psyr_1014	0.66	-0.4
1,148,419	-		Psyr_1014	0.66	-0.0
1,148,419	-		Psyr_1014	0.66	-0.8
1,148,419	-		Psyr_1014	0.66	-0.0
1,148,419	-		Psyr_1014	0.66	+0.5
1,148,419	-		Psyr_1014	0.66	-0.3
1,148,419	-		Psyr_1014	0.66	+0.9
1,148,522	+				+0.9
1,148,523	-				+0.2
1,148,523	-				-1.4
1,148,541	+				-0.3
1,148,553	+				-0.6
1,148,553	+				+0.1
1,148,554	-				+1.4
1,148,621	-				+0.4
1,148,652	+				+0.2
1,148,652	+				-0.9
1,148,652	+				-2.1
1,148,652	+				-1.9
1,148,652	+				+0.4
1,148,652	+				-0.8
1,148,652	+				+2.2
1,148,652	+				+0.4
1,148,652	+				+0.0
1,148,653	-				+3.4
1,148,653	-				+2.6
1,148,653	-				-0.7
1,148,653	-				+0.0
1,148,653	-				+0.2
1,148,653	-				+0.7
1,148,653	-				-0.8
1,148,656	+				-0.1
1,148,656	+				-0.1
1,148,656	+				-1.8
1,148,656	+				+2.8
1,148,656	+				+2.4
1,148,656	+				+0.8
1,148,656	+				+3.4
1,148,656	+				+0.7
1,148,656	+				-0.0
1,148,656	+				-0.4
1,148,656	+				-1.4
1,148,656	+				-0.4
1,148,656	+				+1.4
1,148,656	+				-1.4
1,148,656	+				-0.7
1,148,656	+				-1.6
1,148,656	+				+0.5
1,148,656	+				-1.4
1,148,657	-				+0.9
1,148,657	-				-1.2
1,148,657	-				-0.4
1,148,657	-				-0.6
1,148,657	-				-0.0
1,148,657	-				-0.4
1,148,657	-				+1.4
1,148,657	-				-1.4
1,148,657	-				-0.6
1,148,657	-				-1.3
1,148,657	-				-1.8
1,148,657	-				+0.3
1,148,657	-				+0.1
1,148,657	-				+0.1
1,148,657	-				+3.0
1,148,657	-				-1.5
1,148,657	-				+0.1
1,148,657	-				+1.0
1,148,657	-				-0.6
1,148,658	+				+0.7
1,148,658	+				-0.1
1,148,658	+				-0.5
1,148,658	+				-0.4
1,148,658	+				-1.7
1,148,658	+				+0.3
1,148,658	+				-0.2
1,148,658	+				-0.3
1,148,658	+				+0.0
1,148,658	+				+1.2
1,148,658	+				-0.1
1,148,659	-				+0.0
1,148,659	-				+0.0
1,148,659	-				+0.4
1,148,659	-				-2.1
1,148,659	-				-0.1
1,148,659	-				-1.9
1,148,659	-				+1.3
1,148,659	-				+0.5
1,148,845	+		Psyr_1015	0.16	+0.1
1,148,845	+		Psyr_1015	0.16	+0.1
1,148,845	+		Psyr_1015	0.16	-0.4
1,148,846	-		Psyr_1015	0.16	+4.1