Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0839 and Psyr_0840 are separated by 366 nucleotides Psyr_0840 and Psyr_0841 are separated by 100 nucleotides Psyr_0841 and Psyr_0842 overlap by 2 nucleotides
Psyr_0839: Psyr_0839 - Deoxyribose-phosphate aldolase, at 950,669 to 951,454
_0839
Psyr_0840: Psyr_0840 - Pentapeptide repeat protein, at 951,821 to 952,165
_0840
Psyr_0841: Psyr_0841 - conserved hypothetical protein, at 952,266 to 953,936
_0841
Psyr_0842: Psyr_0842 - Peptidoglycan glycosyltransferase, at 953,935 to 956,256
_0842
Position (kb) 952
953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 951.293 kb on - strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.314 kb on + strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.315 kb on - strand, within Psyr_0839 at 951.535 kb on + strand at 951.677 kb on + strand at 951.678 kb on - strand at 951.688 kb on + strand at 951.702 kb on + strand at 951.702 kb on + strand at 951.703 kb on - strand at 951.710 kb on - strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.767 kb on + strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.768 kb on - strand at 951.991 kb on - strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.129 kb on + strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.130 kb on - strand, within Psyr_0840 at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.131 kb on + strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.132 kb on - strand at 952.208 kb on + strand at 952.209 kb on - strand at 952.209 kb on - strand at 952.209 kb on - strand at 952.267 kb on + strand at 952.267 kb on + strand at 952.268 kb on - strand at 952.561 kb on + strand, within Psyr_0841 at 952.561 kb on + strand, within Psyr_0841 at 952.562 kb on - strand, within Psyr_0841 at 952.562 kb on - strand, within Psyr_0841 at 952.562 kb on - strand, within Psyr_0841 at 952.562 kb on - strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.630 kb on + strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.631 kb on - strand, within Psyr_0841 at 952.658 kb on - strand, within Psyr_0841 at 952.658 kb on - strand, within Psyr_0841 at 952.658 kb on - strand, within Psyr_0841 at 952.658 kb on - strand, within Psyr_0841 at 952.816 kb on + strand, within Psyr_0841 at 952.816 kb on + strand, within Psyr_0841 at 952.816 kb on + strand, within Psyr_0841 at 952.816 kb on + strand, within Psyr_0841 at 952.817 kb on - strand, within Psyr_0841 at 952.817 kb on - strand, within Psyr_0841 at 952.817 kb on - strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.837 kb on + strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.838 kb on - strand, within Psyr_0841 at 952.940 kb on + strand, within Psyr_0841 at 952.943 kb on - strand, within Psyr_0841 at 953.068 kb on + strand, within Psyr_0841 at 953.069 kb on - strand, within Psyr_0841 at 953.316 kb on + strand, within Psyr_0841 at 953.572 kb on + strand, within Psyr_0841 at 953.572 kb on + strand, within Psyr_0841 at 953.572 kb on + strand, within Psyr_0841 at 953.573 kb on - strand, within Psyr_0841 at 953.573 kb on - strand, within Psyr_0841 at 953.573 kb on - strand, within Psyr_0841 at 953.573 kb on - strand, within Psyr_0841 at 953.573 kb on - strand at 953.573 kb on - strand, within Psyr_0841 at 953.573 kb on - strand, within Psyr_0841 at 953.573 kb on - strand, within Psyr_0841 at 953.573 kb on - strand, within Psyr_0841 at 953.686 kb on + strand, within Psyr_0841 at 953.686 kb on + strand, within Psyr_0841 at 953.692 kb on + strand, within Psyr_0841 at 953.692 kb on + strand, within Psyr_0841 at 953.693 kb on - strand, within Psyr_0841 at 953.835 kb on + strand at 953.835 kb on + strand at 953.835 kb on + strand at 953.835 kb on + strand at 953.836 kb on - strand at 953.836 kb on - strand at 953.836 kb on - strand at 953.836 kb on - strand at 953.836 kb on - strand at 953.836 kb on - strand at 953.839 kb on + strand at 953.839 kb on + strand at 953.839 kb on + strand at 953.839 kb on + strand at 953.839 kb on + strand at 953.840 kb on - strand at 953.840 kb on - strand at 953.921 kb on + strand at 953.921 kb on + strand at 953.921 kb on + strand at 953.921 kb on + strand at 953.921 kb on + strand at 953.922 kb on - strand at 953.922 kb on - strand at 953.922 kb on - strand at 953.924 kb on - strand at 953.924 kb on - strand at 954.058 kb on + strand at 954.058 kb on + strand at 954.058 kb on + strand at 954.058 kb on + strand at 954.059 kb on - strand at 954.121 kb on + strand at 954.121 kb on + strand at 954.121 kb on + strand at 954.121 kb on + strand at 954.122 kb on - strand at 954.122 kb on - strand at 954.122 kb on - strand at 954.122 kb on - strand at 954.122 kb on - strand at 954.122 kb on - strand at 954.286 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.337 kb on + strand, within Psyr_0842 at 954.338 kb on - strand, within Psyr_0842 at 954.338 kb on - strand, within Psyr_0842 at 954.338 kb on - strand, within Psyr_0842 at 954.338 kb on - strand, within Psyr_0842 at 954.338 kb on - strand, within Psyr_0842 at 954.338 kb on - strand, within Psyr_0842 at 954.341 kb on + strand, within Psyr_0842 at 954.512 kb on - strand, within Psyr_0842 at 954.512 kb on - strand, within Psyr_0842 at 954.565 kb on - strand, within Psyr_0842 at 954.565 kb on - strand, within Psyr_0842 at 954.628 kb on + strand, within Psyr_0842 at 954.629 kb on - strand, within Psyr_0842 at 954.701 kb on - strand, within Psyr_0842 at 954.701 kb on - strand, within Psyr_0842 at 954.701 kb on - strand, within Psyr_0842 at 954.727 kb on + strand, within Psyr_0842 at 954.797 kb on - strand, within Psyr_0842 at 954.877 kb on + strand, within Psyr_0842 at 954.877 kb on + strand, within Psyr_0842 at 954.877 kb on + strand, within Psyr_0842 at 954.877 kb on + strand, within Psyr_0842 at 954.877 kb on + strand, within Psyr_0842 at 954.877 kb on + strand, within Psyr_0842 at 954.878 kb on - strand, within Psyr_0842 at 954.878 kb on - strand, within Psyr_0842 at 954.878 kb on - strand, within Psyr_0842 at 954.878 kb on - strand, within Psyr_0842 at 954.878 kb on - strand, within Psyr_0842 at 954.878 kb on - strand, within Psyr_0842 at 954.878 kb on - strand, within Psyr_0842 at 954.878 kb on - strand, within Psyr_0842
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 951,293 - Psyr_0839 0.79 -0.7 951,314 + Psyr_0839 0.82 +1.1 951,314 + Psyr_0839 0.82 +0.7 951,314 + Psyr_0839 0.82 -0.6 951,314 + Psyr_0839 0.82 +1.1 951,315 - Psyr_0839 0.82 +0.4 951,315 - Psyr_0839 0.82 +0.0 951,315 - Psyr_0839 0.82 +1.3 951,315 - Psyr_0839 0.82 +1.0 951,535 + +2.0 951,677 + +3.2 951,678 - -0.5 951,688 + +0.4 951,702 + -0.6 951,702 + -0.9 951,703 - -2.0 951,710 - -1.4 951,767 + -0.1 951,767 + +0.3 951,767 + -1.7 951,767 + -1.0 951,767 + -0.1 951,767 + -0.3 951,767 + -1.3 951,767 + +1.4 951,767 + -1.0 951,767 + -0.1 951,767 + +0.8 951,767 + -0.5 951,768 - +1.0 951,768 - +0.2 951,768 - -0.4 951,768 - -0.1 951,768 - -0.7 951,768 - +0.6 951,768 - -0.9 951,768 - +0.4 951,991 - Psyr_0840 0.49 +1.4 952,129 + Psyr_0840 0.89 +0.1 952,129 + Psyr_0840 0.89 -0.0 952,129 + Psyr_0840 0.89 +2.6 952,130 - Psyr_0840 0.90 +0.7 952,130 - Psyr_0840 0.90 +1.8 952,130 - Psyr_0840 0.90 -0.1 952,130 - Psyr_0840 0.90 +0.5 952,130 - Psyr_0840 0.90 -1.1 952,130 - Psyr_0840 0.90 +0.6 952,130 - Psyr_0840 0.90 +0.5 952,130 - Psyr_0840 0.90 +0.2 952,130 - Psyr_0840 0.90 -2.8 952,131 + -0.1 952,131 + -0.1 952,131 + -0.1 952,131 + +0.7 952,131 + -1.4 952,131 + +0.6 952,131 + +0.2 952,131 + -0.1 952,131 + +0.4 952,131 + +0.6 952,131 + +0.7 952,131 + -2.5 952,131 + +1.1 952,132 - +0.0 952,132 - -0.2 952,132 - -2.0 952,132 - +0.0 952,132 - -2.6 952,132 - -1.0 952,132 - +1.4 952,132 - +0.2 952,132 - +0.4 952,208 + -0.3 952,209 - -2.0 952,209 - -0.6 952,209 - +0.7 952,267 + +0.6 952,267 + -1.1 952,268 - +2.1 952,561 + Psyr_0841 0.18 -0.6 952,561 + Psyr_0841 0.18 -0.0 952,562 - Psyr_0841 0.18 +1.0 952,562 - Psyr_0841 0.18 +0.1 952,562 - Psyr_0841 0.18 -0.9 952,562 - Psyr_0841 0.18 -0.7 952,630 + Psyr_0841 0.22 +0.6 952,630 + Psyr_0841 0.22 -0.3 952,630 + Psyr_0841 0.22 +0.1 952,630 + Psyr_0841 0.22 +1.3 952,630 + Psyr_0841 0.22 -0.3 952,631 - Psyr_0841 0.22 -0.9 952,631 - Psyr_0841 0.22 +0.7 952,631 - Psyr_0841 0.22 -0.2 952,631 - Psyr_0841 0.22 -1.4 952,631 - Psyr_0841 0.22 +2.0 952,631 - Psyr_0841 0.22 +0.4 952,631 - Psyr_0841 0.22 +2.3 952,631 - Psyr_0841 0.22 -0.0 952,631 - Psyr_0841 0.22 +1.0 952,631 - Psyr_0841 0.22 +0.4 952,631 - Psyr_0841 0.22 +2.2 952,631 - Psyr_0841 0.22 +0.7 952,631 - Psyr_0841 0.22 -1.3 952,658 - Psyr_0841 0.23 +1.0 952,658 - Psyr_0841 0.23 +2.3 952,658 - Psyr_0841 0.23 -0.6 952,658 - Psyr_0841 0.23 -0.4 952,816 + Psyr_0841 0.33 -0.2 952,816 + Psyr_0841 0.33 -2.4 952,816 + Psyr_0841 0.33 +0.7 952,816 + Psyr_0841 0.33 -2.6 952,817 - Psyr_0841 0.33 -0.1 952,817 - Psyr_0841 0.33 -2.4 952,817 - Psyr_0841 0.33 +0.1 952,837 + Psyr_0841 0.34 +0.9 952,837 + Psyr_0841 0.34 +4.0 952,837 + Psyr_0841 0.34 +0.0 952,837 + Psyr_0841 0.34 -1.1 952,837 + Psyr_0841 0.34 -1.4 952,837 + Psyr_0841 0.34 +0.4 952,837 + Psyr_0841 0.34 +0.2 952,838 - Psyr_0841 0.34 -1.9 952,838 - Psyr_0841 0.34 +0.1 952,838 - Psyr_0841 0.34 -0.4 952,838 - Psyr_0841 0.34 +0.7 952,838 - Psyr_0841 0.34 +3.6 952,838 - Psyr_0841 0.34 +0.7 952,940 + Psyr_0841 0.40 -0.6 952,943 - Psyr_0841 0.41 -0.7 953,068 + Psyr_0841 0.48 +1.7 953,069 - Psyr_0841 0.48 -1.6 953,316 + Psyr_0841 0.63 +3.5 953,572 + Psyr_0841 0.78 -0.1 953,572 + Psyr_0841 0.78 -1.2 953,572 + Psyr_0841 0.78 -0.9 953,573 - Psyr_0841 0.78 -0.4 953,573 - Psyr_0841 0.78 +0.3 953,573 - Psyr_0841 0.78 +1.9 953,573 - Psyr_0841 0.78 +1.4 953,573 - -0.1 953,573 - Psyr_0841 0.78 +0.1 953,573 - Psyr_0841 0.78 -2.0 953,573 - Psyr_0841 0.78 +0.4 953,573 - Psyr_0841 0.78 +1.5 953,686 + Psyr_0841 0.85 +2.1 953,686 + Psyr_0841 0.85 -0.3 953,692 + Psyr_0841 0.85 -1.1 953,692 + Psyr_0841 0.85 -1.7 953,693 - Psyr_0841 0.85 +0.2 953,835 + -2.0 953,835 + +0.6 953,835 + -1.6 953,835 + +0.9 953,836 - +3.7 953,836 - -1.5 953,836 - -0.1 953,836 - -1.9 953,836 - +2.0 953,836 - -0.7 953,839 + +1.9 953,839 + +0.2 953,839 + +1.9 953,839 + +1.2 953,839 + +1.2 953,840 - +0.2 953,840 - +0.6 953,921 + -0.1 953,921 + +0.0 953,921 + -0.5 953,921 + +0.1 953,921 + -1.6 953,922 - +1.8 953,922 - +0.8 953,922 - -0.9 953,924 - -0.6 953,924 - -0.2 954,058 + -1.5 954,058 + -0.0 954,058 + +0.7 954,058 + -2.4 954,059 - -0.0 954,121 + +0.8 954,121 + +1.3 954,121 + -0.3 954,121 + -3.1 954,122 - -1.8 954,122 - +2.0 954,122 - -1.9 954,122 - -0.4 954,122 - +3.4 954,122 - -2.7 954,286 + Psyr_0842 0.15 +0.5 954,337 + Psyr_0842 0.17 -1.1 954,337 + Psyr_0842 0.17 +0.5 954,337 + Psyr_0842 0.17 +2.6 954,337 + Psyr_0842 0.17 -2.0 954,337 + Psyr_0842 0.17 -2.1 954,338 - Psyr_0842 0.17 -0.8 954,338 - Psyr_0842 0.17 +0.5 954,338 - Psyr_0842 0.17 +2.2 954,338 - Psyr_0842 0.17 +0.0 954,338 - Psyr_0842 0.17 +2.1 954,338 - Psyr_0842 0.17 -0.4 954,341 + Psyr_0842 0.17 -0.7 954,512 - Psyr_0842 0.25 +1.0 954,512 - Psyr_0842 0.25 -0.6 954,565 - Psyr_0842 0.27 +1.3 954,565 - Psyr_0842 0.27 +0.8 954,628 + Psyr_0842 0.30 +0.3 954,629 - Psyr_0842 0.30 +1.0 954,701 - Psyr_0842 0.33 -0.3 954,701 - Psyr_0842 0.33 -2.1 954,701 - Psyr_0842 0.33 -1.1 954,727 + Psyr_0842 0.34 -0.5 954,797 - Psyr_0842 0.37 +0.8 954,877 + Psyr_0842 0.41 +0.7 954,877 + Psyr_0842 0.41 +0.4 954,877 + Psyr_0842 0.41 -1.6 954,877 + Psyr_0842 0.41 +0.3 954,877 + Psyr_0842 0.41 -0.3 954,877 + Psyr_0842 0.41 -1.4 954,878 - Psyr_0842 0.41 -0.4 954,878 - Psyr_0842 0.41 -0.5 954,878 - Psyr_0842 0.41 +1.4 954,878 - Psyr_0842 0.41 +0.1 954,878 - Psyr_0842 0.41 -0.4 954,878 - Psyr_0842 0.41 -0.4 954,878 - Psyr_0842 0.41 +0.6 954,878 - Psyr_0842 0.41 +0.1
Or see this region's nucleotide sequence