Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0840

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0839 and Psyr_0840 are separated by 366 nucleotidesPsyr_0840 and Psyr_0841 are separated by 100 nucleotides Psyr_0839: Psyr_0839 - Deoxyribose-phosphate aldolase, at 950,669 to 951,454 _0839 Psyr_0840: Psyr_0840 - Pentapeptide repeat protein, at 951,821 to 952,165 _0840 Psyr_0841: Psyr_0841 - conserved hypothetical protein, at 952,266 to 953,936 _0841 Position (kb) 951 952 953Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 950.881 kb on + strand, within Psyr_0839at 950.882 kb on - strand, within Psyr_0839at 950.882 kb on - strand, within Psyr_0839at 950.882 kb on - strand, within Psyr_0839at 950.949 kb on + strand, within Psyr_0839at 950.949 kb on + strand, within Psyr_0839at 950.949 kb on + strand, within Psyr_0839at 950.949 kb on + strand, within Psyr_0839at 950.950 kb on - strand, within Psyr_0839at 950.950 kb on - strand, within Psyr_0839at 950.950 kb on - strand, within Psyr_0839at 950.950 kb on - strand, within Psyr_0839at 950.950 kb on - strand, within Psyr_0839at 950.950 kb on - strand, within Psyr_0839at 951.085 kb on + strand, within Psyr_0839at 951.085 kb on + strand, within Psyr_0839at 951.253 kb on - strand, within Psyr_0839at 951.253 kb on - strand, within Psyr_0839at 951.293 kb on - strand, within Psyr_0839at 951.314 kb on + strand, within Psyr_0839at 951.314 kb on + strand, within Psyr_0839at 951.314 kb on + strand, within Psyr_0839at 951.314 kb on + strand, within Psyr_0839at 951.315 kb on - strand, within Psyr_0839at 951.315 kb on - strand, within Psyr_0839at 951.315 kb on - strand, within Psyr_0839at 951.315 kb on - strand, within Psyr_0839at 951.535 kb on + strandat 951.677 kb on + strandat 951.678 kb on - strandat 951.688 kb on + strandat 951.702 kb on + strandat 951.702 kb on + strandat 951.703 kb on - strandat 951.710 kb on - strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.767 kb on + strandat 951.768 kb on - strandat 951.768 kb on - strandat 951.768 kb on - strandat 951.768 kb on - strandat 951.768 kb on - strandat 951.768 kb on - strandat 951.768 kb on - strandat 951.768 kb on - strandat 951.991 kb on - strand, within Psyr_0840at 952.129 kb on + strand, within Psyr_0840at 952.129 kb on + strand, within Psyr_0840at 952.129 kb on + strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.130 kb on - strand, within Psyr_0840at 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.131 kb on + strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.132 kb on - strandat 952.208 kb on + strandat 952.209 kb on - strandat 952.209 kb on - strandat 952.209 kb on - strandat 952.267 kb on + strandat 952.267 kb on + strandat 952.268 kb on - strandat 952.561 kb on + strand, within Psyr_0841at 952.561 kb on + strand, within Psyr_0841at 952.562 kb on - strand, within Psyr_0841at 952.562 kb on - strand, within Psyr_0841at 952.562 kb on - strand, within Psyr_0841at 952.562 kb on - strand, within Psyr_0841at 952.630 kb on + strand, within Psyr_0841at 952.630 kb on + strand, within Psyr_0841at 952.630 kb on + strand, within Psyr_0841at 952.630 kb on + strand, within Psyr_0841at 952.630 kb on + strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.631 kb on - strand, within Psyr_0841at 952.658 kb on - strand, within Psyr_0841at 952.658 kb on - strand, within Psyr_0841at 952.658 kb on - strand, within Psyr_0841at 952.658 kb on - strand, within Psyr_0841at 952.816 kb on + strand, within Psyr_0841at 952.816 kb on + strand, within Psyr_0841at 952.816 kb on + strand, within Psyr_0841at 952.816 kb on + strand, within Psyr_0841at 952.817 kb on - strand, within Psyr_0841at 952.817 kb on - strand, within Psyr_0841at 952.817 kb on - strand, within Psyr_0841at 952.837 kb on + strand, within Psyr_0841at 952.837 kb on + strand, within Psyr_0841at 952.837 kb on + strand, within Psyr_0841at 952.837 kb on + strand, within Psyr_0841at 952.837 kb on + strand, within Psyr_0841at 952.837 kb on + strand, within Psyr_0841at 952.837 kb on + strand, within Psyr_0841at 952.838 kb on - strand, within Psyr_0841at 952.838 kb on - strand, within Psyr_0841at 952.838 kb on - strand, within Psyr_0841at 952.838 kb on - strand, within Psyr_0841at 952.838 kb on - strand, within Psyr_0841at 952.838 kb on - strand, within Psyr_0841at 952.940 kb on + strand, within Psyr_0841at 952.943 kb on - strand, within Psyr_0841at 953.068 kb on + strand, within Psyr_0841at 953.069 kb on - strand, within Psyr_0841

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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950,881 + Psyr_0839 0.27 -0.5
950,882 - Psyr_0839 0.27 +1.1
950,882 - Psyr_0839 0.27 +1.9
950,882 - Psyr_0839 0.27 -0.4
950,949 + Psyr_0839 0.36 -0.4
950,949 + Psyr_0839 0.36 +0.3
950,949 + Psyr_0839 0.36 -1.3
950,949 + Psyr_0839 0.36 -0.9
950,950 - Psyr_0839 0.36 +0.0
950,950 - Psyr_0839 0.36 +0.1
950,950 - Psyr_0839 0.36 -1.1
950,950 - Psyr_0839 0.36 -1.9
950,950 - Psyr_0839 0.36 -1.0
950,950 - Psyr_0839 0.36 -0.6
951,085 + Psyr_0839 0.53 +0.5
951,085 + Psyr_0839 0.53 -1.9
951,253 - Psyr_0839 0.74 +2.0
951,253 - Psyr_0839 0.74 +0.1
951,293 - Psyr_0839 0.79 -0.7
951,314 + Psyr_0839 0.82 +1.1
951,314 + Psyr_0839 0.82 +0.7
951,314 + Psyr_0839 0.82 -0.6
951,314 + Psyr_0839 0.82 +1.1
951,315 - Psyr_0839 0.82 +0.4
951,315 - Psyr_0839 0.82 +0.0
951,315 - Psyr_0839 0.82 +1.3
951,315 - Psyr_0839 0.82 +1.0
951,535 + +2.0
951,677 + +3.2
951,678 - -0.5
951,688 + +0.4
951,702 + -0.6
951,702 + -0.9
951,703 - -2.0
951,710 - -1.4
951,767 + -0.1
951,767 + +0.3
951,767 + -1.7
951,767 + -1.0
951,767 + -0.1
951,767 + -0.3
951,767 + -1.3
951,767 + +1.4
951,767 + -1.0
951,767 + -0.1
951,767 + +0.8
951,767 + -0.5
951,768 - +1.0
951,768 - +0.2
951,768 - -0.4
951,768 - -0.1
951,768 - -0.7
951,768 - +0.6
951,768 - -0.9
951,768 - +0.4
951,991 - Psyr_0840 0.49 +1.4
952,129 + Psyr_0840 0.89 +0.1
952,129 + Psyr_0840 0.89 -0.0
952,129 + Psyr_0840 0.89 +2.6
952,130 - Psyr_0840 0.90 +0.7
952,130 - Psyr_0840 0.90 +1.8
952,130 - Psyr_0840 0.90 -0.1
952,130 - Psyr_0840 0.90 +0.5
952,130 - Psyr_0840 0.90 -1.1
952,130 - Psyr_0840 0.90 +0.6
952,130 - Psyr_0840 0.90 +0.5
952,130 - Psyr_0840 0.90 +0.2
952,130 - Psyr_0840 0.90 -2.8
952,131 + -0.1
952,131 + -0.1
952,131 + -0.1
952,131 + +0.7
952,131 + -1.4
952,131 + +0.6
952,131 + +0.2
952,131 + -0.1
952,131 + +0.4
952,131 + +0.6
952,131 + +0.7
952,131 + -2.5
952,131 + +1.1
952,132 - +0.0
952,132 - -0.2
952,132 - -2.0
952,132 - +0.0
952,132 - -2.6
952,132 - -1.0
952,132 - +1.4
952,132 - +0.2
952,132 - +0.4
952,208 + -0.3
952,209 - -2.0
952,209 - -0.6
952,209 - +0.7
952,267 + +0.6
952,267 + -1.1
952,268 - +2.1
952,561 + Psyr_0841 0.18 -0.6
952,561 + Psyr_0841 0.18 -0.0
952,562 - Psyr_0841 0.18 +1.0
952,562 - Psyr_0841 0.18 +0.1
952,562 - Psyr_0841 0.18 -0.9
952,562 - Psyr_0841 0.18 -0.7
952,630 + Psyr_0841 0.22 +0.6
952,630 + Psyr_0841 0.22 -0.3
952,630 + Psyr_0841 0.22 +0.1
952,630 + Psyr_0841 0.22 +1.3
952,630 + Psyr_0841 0.22 -0.3
952,631 - Psyr_0841 0.22 -0.9
952,631 - Psyr_0841 0.22 +0.7
952,631 - Psyr_0841 0.22 -0.2
952,631 - Psyr_0841 0.22 -1.4
952,631 - Psyr_0841 0.22 +2.0
952,631 - Psyr_0841 0.22 +0.4
952,631 - Psyr_0841 0.22 +2.3
952,631 - Psyr_0841 0.22 -0.0
952,631 - Psyr_0841 0.22 +1.0
952,631 - Psyr_0841 0.22 +0.4
952,631 - Psyr_0841 0.22 +2.2
952,631 - Psyr_0841 0.22 +0.7
952,631 - Psyr_0841 0.22 -1.3
952,658 - Psyr_0841 0.23 +1.0
952,658 - Psyr_0841 0.23 +2.3
952,658 - Psyr_0841 0.23 -0.6
952,658 - Psyr_0841 0.23 -0.4
952,816 + Psyr_0841 0.33 -0.2
952,816 + Psyr_0841 0.33 -2.4
952,816 + Psyr_0841 0.33 +0.7
952,816 + Psyr_0841 0.33 -2.6
952,817 - Psyr_0841 0.33 -0.1
952,817 - Psyr_0841 0.33 -2.4
952,817 - Psyr_0841 0.33 +0.1
952,837 + Psyr_0841 0.34 +0.9
952,837 + Psyr_0841 0.34 +4.0
952,837 + Psyr_0841 0.34 +0.0
952,837 + Psyr_0841 0.34 -1.1
952,837 + Psyr_0841 0.34 -1.4
952,837 + Psyr_0841 0.34 +0.4
952,837 + Psyr_0841 0.34 +0.2
952,838 - Psyr_0841 0.34 -1.9
952,838 - Psyr_0841 0.34 +0.1
952,838 - Psyr_0841 0.34 -0.4
952,838 - Psyr_0841 0.34 +0.7
952,838 - Psyr_0841 0.34 +3.6
952,838 - Psyr_0841 0.34 +0.7
952,940 + Psyr_0841 0.40 -0.6
952,943 - Psyr_0841 0.41 -0.7
953,068 + Psyr_0841 0.48 +1.7
953,069 - Psyr_0841 0.48 -1.6

Or see this region's nucleotide sequence