Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0831 and Psyr_0832 overlap by 29 nucleotides Psyr_0832 and Psyr_0833 overlap by 17 nucleotides Psyr_0833 and Psyr_0834 are separated by 98 nucleotides
Psyr_0831: Psyr_0831 - Two-component response regulator CbrB, at 941,320 to 942,804
_0831
Psyr_0832: Psyr_0832 - Two-component sensor kinase CbrA, at 942,776 to 945,730
_0832
Psyr_0833: Psyr_0833 - conserved hypothetical protein, at 945,714 to 945,890
_0833
Psyr_0834: Psyr_0834 - Glutamyl-tRNA synthetase, class Ic, at 945,989 to 946,876
_0834
Position (kb) 942
943
944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 941.831 kb on + strand, within Psyr_0831 at 941.831 kb on + strand, within Psyr_0831 at 941.832 kb on - strand, within Psyr_0831 at 942.903 kb on + strand at 942.904 kb on - strand at 943.170 kb on + strand, within Psyr_0832 at 943.171 kb on - strand, within Psyr_0832 at 943.178 kb on + strand, within Psyr_0832 at 943.178 kb on + strand, within Psyr_0832 at 943.179 kb on - strand, within Psyr_0832 at 943.179 kb on - strand, within Psyr_0832 at 943.216 kb on + strand, within Psyr_0832 at 943.217 kb on - strand, within Psyr_0832 at 943.424 kb on - strand, within Psyr_0832 at 943.818 kb on - strand, within Psyr_0832 at 943.913 kb on + strand, within Psyr_0832 at 943.914 kb on - strand, within Psyr_0832 at 943.914 kb on - strand, within Psyr_0832 at 943.914 kb on - strand, within Psyr_0832 at 943.914 kb on - strand, within Psyr_0832 at 943.914 kb on - strand, within Psyr_0832 at 943.950 kb on + strand, within Psyr_0832 at 944.047 kb on - strand, within Psyr_0832 at 944.337 kb on + strand, within Psyr_0832 at 944.337 kb on + strand, within Psyr_0832 at 944.337 kb on + strand, within Psyr_0832 at 944.337 kb on + strand, within Psyr_0832 at 944.337 kb on + strand, within Psyr_0832 at 944.337 kb on + strand, within Psyr_0832 at 944.338 kb on - strand, within Psyr_0832 at 944.338 kb on - strand, within Psyr_0832 at 944.338 kb on - strand, within Psyr_0832 at 944.338 kb on - strand, within Psyr_0832 at 944.338 kb on - strand, within Psyr_0832 at 944.361 kb on + strand, within Psyr_0832 at 944.361 kb on + strand, within Psyr_0832 at 944.361 kb on + strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.362 kb on - strand, within Psyr_0832 at 944.565 kb on + strand, within Psyr_0832 at 944.565 kb on + strand, within Psyr_0832 at 944.566 kb on - strand, within Psyr_0832 at 944.631 kb on + strand, within Psyr_0832 at 944.636 kb on - strand, within Psyr_0832 at 944.659 kb on - strand, within Psyr_0832 at 944.751 kb on + strand, within Psyr_0832 at 944.808 kb on + strand, within Psyr_0832 at 944.808 kb on + strand, within Psyr_0832 at 944.955 kb on + strand, within Psyr_0832 at 944.956 kb on - strand, within Psyr_0832 at 944.956 kb on - strand, within Psyr_0832 at 944.956 kb on - strand, within Psyr_0832 at 944.956 kb on - strand, within Psyr_0832 at 945.105 kb on + strand, within Psyr_0832 at 945.106 kb on - strand, within Psyr_0832 at 945.106 kb on - strand, within Psyr_0832 at 945.106 kb on - strand, within Psyr_0832 at 945.106 kb on - strand, within Psyr_0832 at 945.115 kb on - strand, within Psyr_0832 at 945.435 kb on + strand at 945.436 kb on - strand at 945.508 kb on - strand at 945.601 kb on - strand at 945.601 kb on - strand at 945.601 kb on - strand at 945.716 kb on - strand at 945.716 kb on - strand at 945.716 kb on - strand at 945.784 kb on + strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.785 kb on - strand, within Psyr_0833 at 945.847 kb on + strand, within Psyr_0833 at 945.848 kb on - strand, within Psyr_0833 at 945.848 kb on - strand, within Psyr_0833 at 945.848 kb on - strand, within Psyr_0833 at 945.880 kb on + strand at 945.880 kb on + strand at 945.880 kb on + strand at 945.881 kb on - strand at 945.881 kb on - strand at 945.881 kb on - strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.882 kb on + strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.883 kb on - strand at 945.886 kb on + strand at 945.886 kb on + strand at 945.886 kb on + strand at 945.886 kb on + strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.887 kb on - strand at 945.910 kb on - strand at 945.910 kb on - strand at 945.953 kb on + strand at 945.953 kb on + strand at 945.953 kb on + strand at 945.954 kb on - strand at 945.954 kb on - strand at 946.223 kb on + strand, within Psyr_0834 at 946.223 kb on + strand, within Psyr_0834 at 946.223 kb on + strand, within Psyr_0834 at 946.224 kb on - strand, within Psyr_0834 at 946.224 kb on - strand, within Psyr_0834 at 946.224 kb on - strand, within Psyr_0834 at 946.224 kb on - strand, within Psyr_0834 at 946.270 kb on - strand, within Psyr_0834 at 946.368 kb on + strand, within Psyr_0834 at 946.368 kb on + strand, within Psyr_0834 at 946.368 kb on + strand, within Psyr_0834 at 946.368 kb on + strand, within Psyr_0834 at 946.369 kb on - strand, within Psyr_0834 at 946.458 kb on + strand, within Psyr_0834 at 946.534 kb on - strand, within Psyr_0834 at 946.538 kb on - strand, within Psyr_0834 at 946.538 kb on - strand, within Psyr_0834 at 946.581 kb on + strand, within Psyr_0834 at 946.718 kb on + strand, within Psyr_0834
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 941,831 + Psyr_0831 0.34 +0.9 941,831 + Psyr_0831 0.34 -2.0 941,832 - Psyr_0831 0.34 -2.1 942,903 + -0.9 942,904 - +2.2 943,170 + Psyr_0832 0.13 +1.4 943,171 - Psyr_0832 0.13 +0.4 943,178 + Psyr_0832 0.14 +1.4 943,178 + Psyr_0832 0.14 -1.6 943,179 - Psyr_0832 0.14 -0.4 943,179 - Psyr_0832 0.14 +1.0 943,216 + Psyr_0832 0.15 -0.9 943,217 - Psyr_0832 0.15 -1.4 943,424 - Psyr_0832 0.22 -1.7 943,818 - Psyr_0832 0.35 -2.6 943,913 + Psyr_0832 0.38 +0.4 943,914 - Psyr_0832 0.39 -1.9 943,914 - Psyr_0832 0.39 -1.6 943,914 - Psyr_0832 0.39 -0.6 943,914 - Psyr_0832 0.39 -1.4 943,914 - Psyr_0832 0.39 -1.4 943,950 + Psyr_0832 0.40 -1.1 944,047 - Psyr_0832 0.43 -1.1 944,337 + Psyr_0832 0.53 -0.1 944,337 + Psyr_0832 0.53 -2.0 944,337 + Psyr_0832 0.53 -2.6 944,337 + Psyr_0832 0.53 -1.6 944,337 + Psyr_0832 0.53 -1.9 944,337 + Psyr_0832 0.53 -0.7 944,338 - Psyr_0832 0.53 -1.1 944,338 - Psyr_0832 0.53 -1.1 944,338 - Psyr_0832 0.53 -1.5 944,338 - Psyr_0832 0.53 +0.4 944,338 - Psyr_0832 0.53 -2.3 944,361 + Psyr_0832 0.54 -1.1 944,361 + Psyr_0832 0.54 -1.1 944,361 + Psyr_0832 0.54 +0.1 944,362 - Psyr_0832 0.54 +1.1 944,362 - Psyr_0832 0.54 -2.4 944,362 - Psyr_0832 0.54 -0.1 944,362 - Psyr_0832 0.54 +1.0 944,362 - Psyr_0832 0.54 +1.1 944,362 - Psyr_0832 0.54 -2.6 944,362 - Psyr_0832 0.54 +0.9 944,362 - Psyr_0832 0.54 -1.9 944,362 - Psyr_0832 0.54 -0.1 944,362 - Psyr_0832 0.54 +3.4 944,362 - Psyr_0832 0.54 +0.0 944,362 - Psyr_0832 0.54 +0.5 944,362 - Psyr_0832 0.54 +0.5 944,362 - Psyr_0832 0.54 +2.0 944,565 + Psyr_0832 0.61 +1.4 944,565 + Psyr_0832 0.61 -0.4 944,566 - Psyr_0832 0.61 -0.9 944,631 + Psyr_0832 0.63 -1.9 944,636 - Psyr_0832 0.63 -2.0 944,659 - Psyr_0832 0.64 +0.1 944,751 + Psyr_0832 0.67 -1.1 944,808 + Psyr_0832 0.69 -1.7 944,808 + Psyr_0832 0.69 -0.9 944,955 + Psyr_0832 0.74 -1.7 944,956 - Psyr_0832 0.74 -0.1 944,956 - Psyr_0832 0.74 +1.0 944,956 - Psyr_0832 0.74 -0.1 944,956 - Psyr_0832 0.74 -1.1 945,105 + Psyr_0832 0.79 -1.1 945,106 - Psyr_0832 0.79 -2.3 945,106 - Psyr_0832 0.79 -2.3 945,106 - Psyr_0832 0.79 +0.6 945,106 - Psyr_0832 0.79 -0.8 945,115 - Psyr_0832 0.79 -2.6 945,435 + -0.1 945,436 - -2.8 945,508 - -0.0 945,601 - -1.6 945,601 - -1.6 945,601 - -0.9 945,716 - +0.6 945,716 - +0.2 945,716 - +0.0 945,784 + Psyr_0833 0.40 -0.6 945,785 - Psyr_0833 0.40 -1.0 945,785 - Psyr_0833 0.40 +0.2 945,785 - Psyr_0833 0.40 -0.5 945,785 - Psyr_0833 0.40 -0.1 945,785 - Psyr_0833 0.40 -1.2 945,785 - Psyr_0833 0.40 +1.2 945,785 - Psyr_0833 0.40 -0.4 945,785 - Psyr_0833 0.40 -2.6 945,847 + Psyr_0833 0.75 -3.2 945,848 - Psyr_0833 0.76 +0.1 945,848 - Psyr_0833 0.76 -0.6 945,848 - Psyr_0833 0.76 -2.3 945,880 + -2.1 945,880 + -0.1 945,880 + +0.4 945,881 - +2.0 945,881 - +1.1 945,881 - -0.2 945,882 + -2.4 945,882 + -0.9 945,882 + -0.6 945,882 + -1.1 945,882 + -0.9 945,882 + +0.3 945,882 + -2.1 945,883 - +1.4 945,883 - +1.9 945,883 - +0.1 945,883 - -0.6 945,883 - +1.1 945,883 - -1.8 945,883 - +1.2 945,883 - -0.1 945,883 - -0.3 945,883 - -1.4 945,883 - -0.5 945,883 - -0.5 945,883 - -0.3 945,883 - -1.8 945,883 - -0.2 945,883 - +1.8 945,883 - -0.1 945,883 - -1.3 945,883 - -0.3 945,883 - +0.8 945,883 - +0.1 945,883 - -0.2 945,886 + +0.4 945,886 + -1.9 945,886 + -0.1 945,886 + -1.4 945,887 - -0.4 945,887 - -1.0 945,887 - -0.8 945,887 - +0.9 945,887 - +4.2 945,887 - -0.9 945,887 - -1.2 945,887 - +0.4 945,887 - -0.3 945,887 - -0.0 945,887 - +0.4 945,887 - -1.1 945,887 - -0.9 945,887 - -2.6 945,887 - +1.1 945,887 - -1.5 945,887 - +0.3 945,887 - -1.2 945,887 - -0.9 945,887 - +1.4 945,887 - +0.0 945,887 - -1.3 945,887 - -0.6 945,887 - -0.9 945,887 - -0.9 945,887 - -3.0 945,887 - -0.6 945,887 - -2.3 945,887 - -1.1 945,887 - -1.6 945,887 - +0.2 945,887 - -0.2 945,910 - +0.6 945,910 - +0.5 945,953 + +1.4 945,953 + -1.1 945,953 + -1.1 945,954 - +0.9 945,954 - +3.7 946,223 + Psyr_0834 0.26 -1.1 946,223 + Psyr_0834 0.26 +0.7 946,223 + Psyr_0834 0.26 -0.9 946,224 - Psyr_0834 0.26 -0.6 946,224 - Psyr_0834 0.26 +0.4 946,224 - Psyr_0834 0.26 +3.8 946,224 - Psyr_0834 0.26 +1.4 946,270 - Psyr_0834 0.32 +0.6 946,368 + Psyr_0834 0.43 -0.3 946,368 + Psyr_0834 0.43 -1.9 946,368 + Psyr_0834 0.43 +0.5 946,368 + Psyr_0834 0.43 +1.4 946,369 - Psyr_0834 0.43 +0.9 946,458 + Psyr_0834 0.53 -0.4 946,534 - Psyr_0834 0.61 +0.3 946,538 - Psyr_0834 0.62 +0.9 946,538 - Psyr_0834 0.62 +0.8 946,581 + Psyr_0834 0.67 -0.6 946,718 + Psyr_0834 0.82 -0.4
Or see this region's nucleotide sequence