Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0830 and Psyr_0831 are separated by 626 nucleotides Psyr_0831 and Psyr_0832 overlap by 29 nucleotides
Psyr_0830: Psyr_0830 - Poly(A) polymerase, at 939,218 to 940,693
_0830
Psyr_0831: Psyr_0831 - Two-component response regulator CbrB, at 941,320 to 942,804
_0831
Psyr_0832: Psyr_0832 - Two-component sensor kinase CbrA, at 942,776 to 945,730
_0832
Position (kb) 941
942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 940.565 kb on - strand at 940.565 kb on - strand at 940.565 kb on - strand at 940.565 kb on - strand at 940.688 kb on + strand at 940.689 kb on - strand at 940.689 kb on - strand at 940.695 kb on + strand at 940.696 kb on - strand at 940.711 kb on + strand at 940.711 kb on + strand at 940.712 kb on - strand at 940.712 kb on - strand at 940.712 kb on - strand at 940.763 kb on + strand at 940.763 kb on + strand at 940.764 kb on - strand at 940.802 kb on + strand at 940.805 kb on + strand at 940.806 kb on - strand at 940.957 kb on + strand at 940.957 kb on + strand at 940.957 kb on + strand at 940.957 kb on + strand at 940.957 kb on + strand at 940.957 kb on + strand at 940.957 kb on + strand at 940.957 kb on + strand at 940.958 kb on - strand at 940.958 kb on - strand at 940.958 kb on - strand at 940.963 kb on + strand at 940.963 kb on + strand at 940.964 kb on - strand at 941.006 kb on + strand at 941.006 kb on + strand at 941.006 kb on + strand at 941.006 kb on + strand at 941.006 kb on + strand at 941.006 kb on + strand at 941.006 kb on + strand at 941.006 kb on + strand at 941.007 kb on - strand at 941.007 kb on - strand at 941.033 kb on - strand at 941.033 kb on - strand at 941.049 kb on + strand at 941.049 kb on + strand at 941.088 kb on + strand at 941.089 kb on - strand at 941.103 kb on - strand at 941.124 kb on - strand at 941.124 kb on - strand at 941.132 kb on + strand at 941.132 kb on + strand at 941.132 kb on + strand at 941.132 kb on + strand at 941.132 kb on + strand at 941.133 kb on - strand at 941.133 kb on - strand at 941.133 kb on - strand at 941.135 kb on - strand at 941.135 kb on - strand at 941.135 kb on - strand at 941.135 kb on - strand at 941.234 kb on + strand at 941.234 kb on + strand at 941.270 kb on - strand at 941.321 kb on + strand at 941.321 kb on + strand at 941.322 kb on - strand at 941.322 kb on - strand at 941.322 kb on - strand at 941.322 kb on - strand at 941.544 kb on - strand, within Psyr_0831 at 941.657 kb on - strand, within Psyr_0831 at 941.657 kb on - strand, within Psyr_0831 at 941.676 kb on - strand, within Psyr_0831 at 941.831 kb on + strand, within Psyr_0831 at 941.831 kb on + strand, within Psyr_0831 at 941.832 kb on - strand, within Psyr_0831 at 942.903 kb on + strand at 942.904 kb on - strand at 943.170 kb on + strand, within Psyr_0832 at 943.171 kb on - strand, within Psyr_0832 at 943.178 kb on + strand, within Psyr_0832 at 943.178 kb on + strand, within Psyr_0832 at 943.179 kb on - strand, within Psyr_0832 at 943.179 kb on - strand, within Psyr_0832 at 943.216 kb on + strand, within Psyr_0832 at 943.217 kb on - strand, within Psyr_0832 at 943.424 kb on - strand, within Psyr_0832
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 940,565 - -0.1 940,565 - -3.1 940,565 - +0.0 940,565 - +0.9 940,688 + -1.5 940,689 - -1.4 940,689 - +0.6 940,695 + -0.3 940,696 - -0.6 940,711 + +0.8 940,711 + +0.4 940,712 - +0.4 940,712 - +0.9 940,712 - +1.2 940,763 + -0.1 940,763 + +2.0 940,764 - +1.4 940,802 + +1.4 940,805 + -0.5 940,806 - +0.3 940,957 + +0.6 940,957 + +0.0 940,957 + +1.4 940,957 + -1.4 940,957 + +0.3 940,957 + -0.6 940,957 + +2.9 940,957 + -1.1 940,958 - -1.1 940,958 - -0.1 940,958 - -0.9 940,963 + -0.1 940,963 + -1.1 940,964 - -0.1 941,006 + -0.4 941,006 + +0.3 941,006 + +0.2 941,006 + -2.1 941,006 + -1.6 941,006 + +1.0 941,006 + -1.7 941,006 + -2.9 941,007 - +1.4 941,007 - +0.5 941,033 - -0.1 941,033 - +0.6 941,049 + +0.1 941,049 + -1.6 941,088 + +1.4 941,089 - -0.1 941,103 - -0.3 941,124 - -0.9 941,124 - -0.0 941,132 + +0.3 941,132 + +0.2 941,132 + +3.8 941,132 + -1.4 941,132 + -0.1 941,133 - -1.9 941,133 - -1.6 941,133 - -0.3 941,135 - +0.7 941,135 - -0.1 941,135 - -1.4 941,135 - +1.4 941,234 + -0.2 941,234 + -0.9 941,270 - +0.4 941,321 + +0.1 941,321 + +1.3 941,322 - +1.3 941,322 - -0.3 941,322 - +1.2 941,322 - +1.9 941,544 - Psyr_0831 0.15 -1.6 941,657 - Psyr_0831 0.23 -0.6 941,657 - Psyr_0831 0.23 -0.6 941,676 - Psyr_0831 0.24 -0.4 941,831 + Psyr_0831 0.34 +0.9 941,831 + Psyr_0831 0.34 -2.0 941,832 - Psyr_0831 0.34 -2.1 942,903 + -0.9 942,904 - +2.2 943,170 + Psyr_0832 0.13 +1.4 943,171 - Psyr_0832 0.13 +0.4 943,178 + Psyr_0832 0.14 +1.4 943,178 + Psyr_0832 0.14 -1.6 943,179 - Psyr_0832 0.14 -0.4 943,179 - Psyr_0832 0.14 +1.0 943,216 + Psyr_0832 0.15 -0.9 943,217 - Psyr_0832 0.15 -1.4 943,424 - Psyr_0832 0.22 -1.7
Or see this region's nucleotide sequence