Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0826 and Psyr_0827 are separated by 253 nucleotides Psyr_0827 and Psyr_0828 overlap by 4 nucleotides
Psyr_0826: Psyr_0826 - glucose-6-phosphate isomerase, at 934,924 to 936,588
_0826
Psyr_0827: Psyr_0827 - pantothenate synthetase, at 936,842 to 937,693
_0827
Psyr_0828: Psyr_0828 - ketopantoate hydroxymethyltransferase, at 937,690 to 938,490
_0828
Position (kb) 936
937
938 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 935.900 kb on + strand, within Psyr_0826 at 935.943 kb on + strand, within Psyr_0826 at 936.039 kb on - strand, within Psyr_0826 at 936.039 kb on - strand, within Psyr_0826 at 936.221 kb on - strand, within Psyr_0826 at 936.333 kb on - strand, within Psyr_0826 at 936.333 kb on - strand, within Psyr_0826 at 936.581 kb on + strand at 936.582 kb on - strand at 936.605 kb on + strand at 936.605 kb on + strand at 936.687 kb on - strand at 936.710 kb on + strand at 936.710 kb on + strand at 936.710 kb on + strand at 936.710 kb on + strand at 936.710 kb on + strand at 936.710 kb on + strand at 936.711 kb on - strand at 936.711 kb on - strand at 936.711 kb on - strand at 936.711 kb on - strand at 936.711 kb on - strand at 936.711 kb on - strand at 936.711 kb on - strand at 936.762 kb on + strand at 936.817 kb on + strand at 936.817 kb on + strand at 936.817 kb on + strand at 936.817 kb on + strand at 936.818 kb on - strand at 936.818 kb on - strand at 936.818 kb on - strand at 936.818 kb on - strand at 936.818 kb on - strand at 936.818 kb on - strand at 936.818 kb on - strand at 936.970 kb on - strand, within Psyr_0827 at 937.080 kb on + strand, within Psyr_0827 at 937.081 kb on - strand, within Psyr_0827 at 937.161 kb on - strand, within Psyr_0827 at 937.398 kb on + strand, within Psyr_0827 at 937.482 kb on + strand, within Psyr_0827 at 937.482 kb on + strand, within Psyr_0827 at 937.482 kb on + strand, within Psyr_0827 at 937.483 kb on - strand, within Psyr_0827 at 937.531 kb on + strand, within Psyr_0827 at 937.683 kb on - strand at 937.748 kb on + strand at 937.749 kb on - strand at 938.311 kb on - strand, within Psyr_0828 at 938.417 kb on + strand at 938.473 kb on - strand at 938.479 kb on + strand at 938.479 kb on + strand at 938.480 kb on - strand at 938.480 kb on - strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.492 kb on + strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.493 kb on - strand at 938.633 kb on + strand at 938.634 kb on - strand at 938.634 kb on - strand at 938.673 kb on + strand at 938.673 kb on + strand at 938.673 kb on + strand at 938.674 kb on - strand at 938.693 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 935,900 + Psyr_0826 0.59 +3.4 935,943 + Psyr_0826 0.61 -0.9 936,039 - Psyr_0826 0.67 -0.1 936,039 - Psyr_0826 0.67 +1.2 936,221 - Psyr_0826 0.78 -1.9 936,333 - Psyr_0826 0.85 +1.4 936,333 - Psyr_0826 0.85 -1.1 936,581 + +1.4 936,582 - -2.6 936,605 + +0.6 936,605 + +1.2 936,687 - +0.2 936,710 + -1.3 936,710 + -0.6 936,710 + +1.4 936,710 + -1.4 936,710 + -1.6 936,710 + -1.7 936,711 - -0.7 936,711 - +0.6 936,711 - -1.5 936,711 - -1.7 936,711 - +0.9 936,711 - -0.6 936,711 - -1.0 936,762 + +0.4 936,817 + +0.8 936,817 + +0.8 936,817 + -2.5 936,817 + -1.6 936,818 - +0.9 936,818 - +1.0 936,818 - -0.2 936,818 - -2.3 936,818 - +1.7 936,818 - -1.1 936,818 - -0.8 936,970 - Psyr_0827 0.15 -1.9 937,080 + Psyr_0827 0.28 -2.0 937,081 - Psyr_0827 0.28 -1.1 937,161 - Psyr_0827 0.37 -3.0 937,398 + Psyr_0827 0.65 -2.7 937,482 + Psyr_0827 0.75 -2.1 937,482 + Psyr_0827 0.75 -2.1 937,482 + Psyr_0827 0.75 -2.6 937,483 - Psyr_0827 0.75 -2.7 937,531 + Psyr_0827 0.81 -3.2 937,683 - -2.9 937,748 + -1.1 937,749 - -1.0 938,311 - Psyr_0828 0.78 -2.1 938,417 + -1.4 938,473 - -3.2 938,479 + +0.9 938,479 + -1.1 938,480 - -0.9 938,480 - -2.9 938,492 + -1.9 938,492 + -0.6 938,492 + -1.5 938,492 + -2.3 938,492 + -2.4 938,492 + -3.5 938,492 + -1.6 938,492 + +0.4 938,492 + -2.1 938,492 + -2.0 938,492 + -1.1 938,492 + -2.0 938,492 + -2.8 938,493 - +0.4 938,493 - -0.9 938,493 - -0.6 938,493 - -1.6 938,493 - -1.4 938,493 - -2.9 938,493 - -1.9 938,493 - +0.1 938,493 - -0.8 938,493 - +1.0 938,493 - -2.0 938,493 - -3.0 938,493 - -0.8 938,633 + -0.2 938,634 - -1.3 938,634 - +0.7 938,673 + -0.1 938,673 + +1.9 938,673 + +0.6 938,674 - +1.8 938,693 + -0.1
Or see this region's nucleotide sequence