Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0700

Experiment: epiphytic; Green bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0697 and Psyr_0698 are separated by 33 nucleotidesPsyr_0698 and Psyr_0699 are separated by 6 nucleotidesPsyr_0699 and Psyr_0700 are separated by 146 nucleotidesPsyr_0700 and Psyr_0701 are separated by 240 nucleotidesPsyr_0701 and Psyr_0702 are separated by 32 nucleotides Psyr_0697: Psyr_0697 - tRNA 2-selenouridine synthase, at 801,532 to 802,632 _0697 Psyr_0698: Psyr_0698 - CDS, at 802,666 to 802,965 _0698 Psyr_0699: Psyr_0699 - CDS, at 802,972 to 803,430 _0699 Psyr_0700: Psyr_0700 - Trans-hexaprenyltranstransferase, at 803,577 to 804,545 _0700 Psyr_0701: Psyr_0701 - LSU ribosomal protein L21P, at 804,786 to 805,097 _0701 Psyr_0702: Psyr_0702 - LSU ribosomal protein L27P, at 805,130 to 805,405 _0702 Position (kb) 803 804 805Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 802.603 kb on + strandat 802.630 kb on + strandat 802.630 kb on + strandat 802.687 kb on + strandat 802.688 kb on - strandat 802.688 kb on - strandat 802.963 kb on + strandat 802.963 kb on + strandat 802.963 kb on + strandat 802.963 kb on + strandat 802.964 kb on - strandat 802.964 kb on - strandat 803.158 kb on + strand, within Psyr_0699at 803.158 kb on + strand, within Psyr_0699at 803.158 kb on + strand, within Psyr_0699at 803.159 kb on - strand, within Psyr_0699at 803.159 kb on - strand, within Psyr_0699at 803.421 kb on - strandat 803.421 kb on - strandat 803.421 kb on - strandat 803.518 kb on - strandat 803.518 kb on - strandat 804.583 kb on - strandat 804.583 kb on - strandat 804.583 kb on - strandat 804.583 kb on - strandat 804.609 kb on + strandat 804.610 kb on - strandat 804.610 kb on - strandat 804.688 kb on + strandat 805.455 kb on + strandat 805.461 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Green bean
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802,603 + +0.5
802,630 + -0.8
802,630 + +2.7
802,687 + +3.3
802,688 - +0.5
802,688 - -3.0
802,963 + +0.1
802,963 + -1.0
802,963 + +1.1
802,963 + -1.8
802,964 - -2.1
802,964 - -1.0
803,158 + Psyr_0699 0.41 -0.5
803,158 + Psyr_0699 0.41 -2.0
803,158 + Psyr_0699 0.41 +0.5
803,159 - Psyr_0699 0.41 +0.7
803,159 - Psyr_0699 0.41 -1.5
803,421 - +0.3
803,421 - -0.6
803,421 - +0.5
803,518 - -0.3
803,518 - -0.4
804,583 - +0.0
804,583 - +2.6
804,583 - -1.2
804,583 - -0.5
804,609 + -1.3
804,610 - +1.7
804,610 - -2.1
804,688 + -2.0
805,455 + +0.3
805,461 + -1.3

Or see this region's nucleotide sequence