Experiment: epiphytic; Green bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_RNA7 and Psyr_RNA8 are separated by 144 nucleotides Psyr_RNA8 and Psyr_0680 are separated by 195 nucleotides Psyr_0680 and Psyr_0681 overlap by 4 nucleotides
Psyr_RNA7: Psyr_RNA7 - 23S ribosomal RNA, at 774,183 to 777,085
_RNA7
Psyr_RNA8: Psyr_RNA8 - 5S ribosomal RNA, at 777,230 to 777,344
_RNA8
Psyr_0680: Psyr_0680 - DNA helicase/exodeoxyribonuclease V, gamma subunit, at 777,540 to 781,013
_0680
Psyr_0681: Psyr_0681 - DNA helicase/exodeoxyribonuclease V, beta subunit, at 781,010 to 784,702
_0681
Position (kb) 777
778
779
780
781
782 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 777.432 kb on + strand at 778.070 kb on - strand, within Psyr_0680 at 778.398 kb on + strand, within Psyr_0680 at 778.398 kb on + strand, within Psyr_0680 at 778.398 kb on + strand, within Psyr_0680 at 778.506 kb on + strand, within Psyr_0680 at 778.847 kb on - strand, within Psyr_0680 at 779.409 kb on + strand, within Psyr_0680 at 779.772 kb on + strand, within Psyr_0680 at 779.897 kb on + strand, within Psyr_0680 at 780.156 kb on + strand, within Psyr_0680 at 780.156 kb on + strand, within Psyr_0680 at 781.743 kb on - strand, within Psyr_0681
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Green bean remove 777,432 + +0.0 778,070 - Psyr_0680 0.15 +0.5 778,398 + Psyr_0680 0.25 -2.2 778,398 + Psyr_0680 0.25 +1.5 778,398 + Psyr_0680 0.25 +0.0 778,506 + Psyr_0680 0.28 -1.1 778,847 - Psyr_0680 0.38 -1.1 779,409 + Psyr_0680 0.54 +1.5 779,772 + Psyr_0680 0.64 -2.2 779,897 + Psyr_0680 0.68 -3.8 780,156 + Psyr_0680 0.75 -1.0 780,156 + Psyr_0680 0.75 -2.0 781,743 - Psyr_0681 0.20 -0.8
Or see this region's nucleotide sequence